Wall clock time and date at job start Wed Apr 1 2020 04:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46508 * 120.00015 * 2 1 4 4 S 1.65602 * 120.00226 * 180.02562 * 2 1 3 5 5 O 1.42095 * 106.40152 * 203.53951 * 4 2 1 6 6 O 1.42098 * 106.39709 * 336.45685 * 4 2 1 7 7 C 1.76200 * 107.21758 * 89.99582 * 4 2 1 8 8 C 1.38277 * 119.94592 * 269.72622 * 7 4 2 9 9 C 1.38269 * 120.15888 * 179.76852 * 8 7 4 10 10 C 1.38309 * 120.04093 * 0.50651 * 9 8 7 11 11 F 1.35095 * 120.05680 * 179.72474 * 10 9 8 12 12 C 1.39052 * 119.88801 * 359.74861 * 10 9 8 13 13 N 1.40078 * 120.07375 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99278 * 204.75636 * 13 12 10 15 15 O 1.21582 * 120.00471 * 5.63490 * 14 13 12 16 16 N 1.34779 * 119.99543 * 185.63625 * 14 13 12 17 17 C 1.46500 * 119.99844 * 179.97438 * 16 14 13 18 18 C 1.50704 * 109.46984 * 180.02562 * 17 16 14 19 19 H 1.08008 * 119.99962 * 359.97438 * 18 17 16 20 20 C 1.37868 * 120.00163 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00353 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 120.00077 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47285 * 89.99922 * 22 20 18 24 24 H 1.48500 * 109.47231 * 210.00399 * 22 20 18 25 25 H 1.48499 * 109.46575 * 330.00007 * 22 20 18 26 26 C 1.38143 * 119.94549 * 90.00005 * 7 4 2 27 27 H 1.08998 * 109.47703 * 89.99849 * 1 2 3 28 28 H 1.09004 * 109.46988 * 329.99449 * 1 2 3 29 29 H 1.09001 * 109.47342 * 210.00104 * 1 2 3 30 30 H 1.09002 * 109.46823 * 89.99997 * 3 2 1 31 31 H 1.08999 * 109.47172 * 210.00401 * 3 2 1 32 32 H 1.09000 * 109.47289 * 330.00404 * 3 2 1 33 33 H 1.08003 * 119.92416 * 0.02562 * 8 7 4 34 34 H 1.07998 * 119.98246 * 180.23931 * 9 8 7 35 35 H 0.96994 * 120.00250 * 24.75149 * 13 12 10 36 36 H 0.97003 * 120.00108 * 359.97438 * 16 14 13 37 37 H 1.08998 * 109.47550 * 299.99638 * 17 16 14 38 38 H 1.08989 * 109.47294 * 60.00319 * 17 16 14 39 39 H 0.96998 * 120.00273 * 180.02562 * 21 20 18 40 40 H 1.08000 * 120.02132 * 359.96143 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 -0.0006 5 8 3.5759 -1.1569 0.5439 6 8 1.4113 -2.4066 0.5434 7 6 2.5537 -1.8851 -1.6839 8 6 1.6210 -2.6656 -2.3418 9 6 1.8188 -3.0181 -3.6641 10 6 2.9565 -2.5991 -4.3296 11 9 3.1528 -2.9480 -5.6199 12 6 3.8982 -1.8186 -3.6682 13 7 5.0517 -1.3916 -4.3387 14 6 6.1642 -1.0901 -3.6403 15 8 6.2008 -1.2856 -2.4409 16 7 7.2363 -0.5717 -4.2716 17 6 8.4455 -0.2434 -3.5125 18 6 9.4878 0.3169 -4.4456 19 1 9.2713 0.4178 -5.4989 20 6 10.7181 0.6995 -3.9550 21 7 11.6279 1.1880 -4.7694 22 14 11.0928 0.5242 -2.1333 23 1 11.6837 -0.8137 -1.8760 24 1 12.0552 1.5778 -1.7222 25 1 9.8374 0.6691 -1.3536 26 6 3.6924 -1.4630 -2.3425 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 0.8900 0.5139 29 1 -0.3634 -0.8900 0.5138 30 1 2.3791 1.5834 1.0277 31 1 3.1499 1.1385 -0.5139 32 1 1.6084 2.0285 -0.5138 33 1 0.7338 -2.9973 -1.8228 34 1 1.0865 -3.6246 -4.1763 35 1 5.0496 -1.3130 -5.3054 36 1 7.2072 -0.4161 -5.2286 37 1 8.2057 0.4972 -2.7496 38 1 8.8309 -1.1445 -3.0356 39 1 12.4936 1.4569 -4.4242 40 1 4.4218 -0.8566 -1.8261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488491120.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:53 Heat of formation + Delta-G solvation = -102.340700 kcal Electronic energy + Delta-G solvation = -28126.736414 eV Core-core repulsion = 23791.080744 eV Total energy + Delta-G solvation = -4335.655670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.099 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.30976 -40.52571 -38.66458 -37.44051 -36.43815 -35.97319 -35.04965 -34.43125 -32.48464 -31.16805 -30.00677 -28.41220 -27.70628 -24.97966 -23.97452 -23.37800 -22.06340 -20.64759 -19.45830 -18.80628 -18.38081 -17.87850 -17.41364 -16.95008 -16.49072 -16.40179 -16.11000 -15.83207 -15.13568 -14.94437 -14.76481 -14.61521 -14.31874 -14.11854 -13.60361 -13.55593 -13.44279 -13.28746 -12.99530 -12.90158 -12.61097 -12.45701 -12.39389 -12.24737 -11.94581 -11.88495 -11.77517 -11.24548 -11.06094 -10.91845 -10.71603 -10.02862 -9.81385 -9.56048 -9.49029 -9.35133 -8.86252 -8.53065 -8.12067 -6.26736 -4.30264 0.09289 0.43326 0.91685 2.58294 2.70874 3.02177 3.25355 3.32686 3.40780 3.48451 3.57781 3.78107 4.04313 4.29376 4.36895 4.47195 4.54966 4.73192 4.93981 5.03376 5.03792 5.08731 5.12770 5.29343 5.35636 5.41336 5.54064 5.60910 5.63386 5.70288 5.91210 6.07071 6.18201 6.52559 6.65798 6.97619 6.99832 7.11964 7.33162 8.11850 8.41401 8.68444 8.82672 9.32191 10.84900 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.012510 B = 0.003239 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.691797 B = 8643.704115 C =10211.794239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.006 6.006 3 C 0.090 3.910 4 S 2.694 3.306 5 O -0.938 6.938 6 O -0.956 6.956 7 C -0.668 4.668 8 C -0.025 4.025 9 C -0.150 4.150 10 C 0.110 3.890 11 F -0.130 7.130 12 C 0.138 3.862 13 N -0.688 5.688 14 C 0.690 3.310 15 O -0.575 6.575 16 N -0.709 5.709 17 C 0.235 3.765 18 C -0.547 4.547 19 H 0.080 0.920 20 C 0.080 3.920 21 N -0.891 5.891 22 Si 0.876 3.124 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.010 4.010 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.411 0.589 36 H 0.396 0.604 37 H 0.029 0.971 38 H 0.024 0.976 39 H 0.269 0.731 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.418 -2.816 3.822 26.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.845 5.845 3 C -0.055 4.055 4 S 2.783 3.217 5 O -0.928 6.928 6 O -0.946 6.946 7 C -0.755 4.755 8 C -0.046 4.046 9 C -0.170 4.170 10 C 0.087 3.913 11 F -0.108 7.108 12 C 0.038 3.962 13 N -0.335 5.335 14 C 0.390 3.610 15 O -0.453 6.453 16 N -0.360 5.360 17 C 0.113 3.887 18 C -0.585 4.585 19 H 0.098 0.902 20 C -0.125 4.125 21 N -0.528 5.528 22 Si 0.702 3.298 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.032 4.032 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.247 0.753 36 H 0.230 0.770 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.079 0.921 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -25.737 -3.276 5.555 26.532 hybrid contribution 0.392 0.014 -1.397 1.451 sum -25.345 -3.263 4.157 25.890 Atomic orbital electron populations 1.21636 0.78137 1.04373 1.02197 1.57358 1.15404 1.21805 1.89947 1.21572 0.96512 0.84702 1.02742 1.02085 0.73279 0.72457 0.73830 1.93657 1.39428 1.83963 1.75799 1.93559 1.66330 1.58447 1.76246 1.31025 1.03469 1.13947 1.27087 1.20647 0.97390 0.93331 0.93185 1.21020 0.97156 1.03302 0.95530 1.17631 0.96588 0.97509 0.79616 1.91515 1.95156 1.90020 1.34156 1.17594 0.87417 0.97595 0.93572 1.42715 1.09961 1.70179 1.10629 1.16140 0.79966 0.79269 0.85596 1.90899 1.82204 1.59620 1.12563 1.45492 1.13865 1.64486 1.12141 1.19511 0.80693 0.95913 0.92555 1.21034 0.97428 1.43983 0.96018 0.90214 1.24765 0.95574 0.93865 0.98264 1.69871 1.05859 1.41698 1.35332 0.86829 0.79289 0.78508 0.85182 1.19757 1.20805 1.18274 1.21280 0.94307 0.95292 0.92298 0.92568 0.90410 0.89771 0.91877 0.90532 0.90721 0.83420 0.83473 0.75338 0.76983 0.95299 0.95850 0.92140 0.80577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.49 10.66 59.84 0.64 1.12 16 2 N -1.01 -8.90 3.58 -129.20 -0.46 -9.37 16 3 C 0.09 0.72 10.29 59.85 0.62 1.33 16 4 S 2.69 32.92 5.65 -107.50 -0.61 32.31 16 5 O -0.94 -15.21 16.35 -57.17 -0.93 -16.14 16 6 O -0.96 -12.57 15.87 -57.17 -0.91 -13.48 16 7 C -0.67 -8.18 5.97 -39.60 -0.24 -8.41 16 8 C -0.02 -0.25 9.52 -39.56 -0.38 -0.62 16 9 C -0.15 -1.44 10.02 -39.54 -0.40 -1.83 16 10 C 0.11 1.29 7.31 -39.25 -0.29 1.01 16 11 F -0.13 -1.48 16.82 2.25 0.04 -1.45 16 12 C 0.14 1.93 6.44 -83.58 -0.54 1.40 16 13 N -0.69 -9.94 5.32 -14.16 -0.08 -10.02 16 14 C 0.69 12.95 8.37 -86.92 -0.73 12.22 16 15 O -0.57 -12.77 13.51 5.29 0.07 -12.70 16 16 N -0.71 -13.78 5.55 -66.42 -0.37 -14.15 16 17 C 0.24 5.62 4.50 -5.19 -0.02 5.59 16 18 C -0.55 -14.60 9.83 -34.44 -0.34 -14.94 16 19 H 0.08 2.21 7.84 -52.48 -0.41 1.80 16 20 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 21 N -0.89 -26.02 13.96 55.43 0.77 -25.25 16 22 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 26 C -0.01 -0.15 8.19 -39.41 -0.32 -0.47 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 29 H 0.08 0.51 7.02 -51.93 -0.36 0.15 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.69 7.79 -51.93 -0.40 0.29 16 32 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 33 H 0.15 1.07 7.60 -52.48 -0.40 0.67 16 34 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.41 4.68 8.47 -40.82 -0.35 4.34 16 36 H 0.40 6.64 8.34 -40.82 -0.34 6.30 16 37 H 0.03 0.72 7.20 -51.93 -0.37 0.35 16 38 H 0.02 0.59 7.57 -51.94 -0.39 0.19 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.18 3.01 5.34 -52.49 -0.28 2.73 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -35.55 357.37 -8.43 -43.98 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -4.59 Total: 5.91 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -2.09 Total: -1.50 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.13 Total: -58.78 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -1.77 Total: -42.32 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Atomic # 16 Polarization: 32.92 SS G_CDS: -0.61 Total: 32.31 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.55 -8.43 -43.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488491120.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.359 kcal (2) G-P(sol) polarization free energy of solvation -35.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds