Wall clock time and date at job start Wed Apr 1 2020 04:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46508 * 120.00015 * 2 1 4 4 S 1.65602 * 120.00226 * 180.02562 * 2 1 3 5 5 O 1.42095 * 106.40152 * 203.53951 * 4 2 1 6 6 O 1.42098 * 106.39709 * 336.45685 * 4 2 1 7 7 C 1.76200 * 107.21758 * 89.99582 * 4 2 1 8 8 C 1.38277 * 119.94592 * 269.72622 * 7 4 2 9 9 C 1.38269 * 120.15888 * 179.76852 * 8 7 4 10 10 C 1.38309 * 120.04093 * 0.50651 * 9 8 7 11 11 F 1.35095 * 120.05680 * 179.72474 * 10 9 8 12 12 C 1.39052 * 119.88801 * 359.74861 * 10 9 8 13 13 N 1.40078 * 120.07375 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99278 * 204.75636 * 13 12 10 15 15 O 1.21582 * 120.00471 * 5.63490 * 14 13 12 16 16 N 1.34779 * 119.99543 * 185.63625 * 14 13 12 17 17 C 1.46500 * 119.99844 * 179.97438 * 16 14 13 18 18 C 1.50704 * 109.46984 * 180.02562 * 17 16 14 19 19 H 1.08008 * 119.99962 * 359.97438 * 18 17 16 20 20 C 1.37868 * 120.00163 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00353 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 120.00077 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47285 * 89.99922 * 22 20 18 24 24 H 1.48500 * 109.47231 * 210.00399 * 22 20 18 25 25 H 1.48499 * 109.46575 * 330.00007 * 22 20 18 26 26 C 1.38143 * 119.94549 * 90.00005 * 7 4 2 27 27 H 1.08998 * 109.47703 * 89.99849 * 1 2 3 28 28 H 1.09004 * 109.46988 * 329.99449 * 1 2 3 29 29 H 1.09001 * 109.47342 * 210.00104 * 1 2 3 30 30 H 1.09002 * 109.46823 * 89.99997 * 3 2 1 31 31 H 1.08999 * 109.47172 * 210.00401 * 3 2 1 32 32 H 1.09000 * 109.47289 * 330.00404 * 3 2 1 33 33 H 1.08003 * 119.92416 * 0.02562 * 8 7 4 34 34 H 1.07998 * 119.98246 * 180.23931 * 9 8 7 35 35 H 0.96994 * 120.00250 * 24.75149 * 13 12 10 36 36 H 0.97003 * 120.00108 * 359.97438 * 16 14 13 37 37 H 1.08998 * 109.47550 * 299.99638 * 17 16 14 38 38 H 1.08989 * 109.47294 * 60.00319 * 17 16 14 39 39 H 0.96998 * 120.00273 * 180.02562 * 21 20 18 40 40 H 1.08000 * 120.02132 * 359.96143 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 -0.0006 5 8 3.5759 -1.1569 0.5439 6 8 1.4113 -2.4066 0.5434 7 6 2.5537 -1.8851 -1.6839 8 6 1.6210 -2.6656 -2.3418 9 6 1.8188 -3.0181 -3.6641 10 6 2.9565 -2.5991 -4.3296 11 9 3.1528 -2.9480 -5.6199 12 6 3.8982 -1.8186 -3.6682 13 7 5.0517 -1.3916 -4.3387 14 6 6.1642 -1.0901 -3.6403 15 8 6.2008 -1.2856 -2.4409 16 7 7.2363 -0.5717 -4.2716 17 6 8.4455 -0.2434 -3.5125 18 6 9.4878 0.3169 -4.4456 19 1 9.2713 0.4178 -5.4989 20 6 10.7181 0.6995 -3.9550 21 7 11.6279 1.1880 -4.7694 22 14 11.0928 0.5242 -2.1333 23 1 11.6837 -0.8137 -1.8760 24 1 12.0552 1.5778 -1.7222 25 1 9.8374 0.6691 -1.3536 26 6 3.6924 -1.4630 -2.3425 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 0.8900 0.5139 29 1 -0.3634 -0.8900 0.5138 30 1 2.3791 1.5834 1.0277 31 1 3.1499 1.1385 -0.5139 32 1 1.6084 2.0285 -0.5138 33 1 0.7338 -2.9973 -1.8228 34 1 1.0865 -3.6246 -4.1763 35 1 5.0496 -1.3130 -5.3054 36 1 7.2072 -0.4161 -5.2286 37 1 8.2057 0.4972 -2.7496 38 1 8.8309 -1.1445 -3.0356 39 1 12.4936 1.4569 -4.4242 40 1 4.4218 -0.8566 -1.8261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488491120.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:52 Heat of formation + Delta-G solvation = -130.866201 kcal Electronic energy + Delta-G solvation = -28127.973373 eV Core-core repulsion = 23791.080744 eV Total energy + Delta-G solvation = -4336.892629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.099 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.22548 -41.82892 -39.81197 -38.48037 -37.15222 -36.96904 -36.51519 -35.99405 -34.49108 -32.09542 -31.26651 -29.46895 -28.95735 -25.63422 -25.19773 -24.46602 -23.65580 -22.14135 -20.49558 -20.13632 -19.48775 -18.77837 -18.48807 -18.33965 -17.81752 -17.56510 -17.05663 -16.80440 -16.57995 -16.52402 -15.89035 -15.51947 -15.43253 -15.18214 -15.03793 -14.68381 -14.46982 -14.44487 -14.32104 -14.15407 -13.79560 -13.53575 -13.37474 -13.26193 -13.06930 -12.91896 -12.74633 -12.65129 -12.54094 -12.22819 -11.96825 -11.94352 -11.68567 -11.30860 -10.93894 -10.35085 -10.16324 -10.05884 -9.33243 -8.41671 -6.49048 -0.81461 -0.51737 -0.03468 1.31920 1.34148 1.41284 1.48526 1.69678 1.93872 2.27200 2.28761 2.62743 2.83773 2.94181 3.03725 3.23075 3.51286 3.84547 3.90779 4.02091 4.16854 4.42265 4.48757 4.56048 4.68496 4.73546 4.79673 4.84137 4.90229 4.94671 4.99754 4.99840 5.06399 5.09706 5.20551 5.36729 5.54425 5.62543 5.73329 6.13304 6.52119 6.89954 7.14369 7.35182 8.72857 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.012510 B = 0.003239 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.691797 B = 8643.704115 C =10211.794239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -1.000 6.000 3 C 0.082 3.918 4 S 2.705 3.295 5 O -0.988 6.988 6 O -0.967 6.967 7 C -0.670 4.670 8 C -0.012 4.012 9 C -0.134 4.134 10 C 0.116 3.884 11 F -0.126 7.126 12 C 0.109 3.891 13 N -0.672 5.672 14 C 0.694 3.306 15 O -0.611 6.611 16 N -0.708 5.708 17 C 0.248 3.752 18 C -0.546 4.546 19 H 0.062 0.938 20 C 0.030 3.970 21 N -0.929 5.929 22 Si 0.933 3.067 23 H -0.267 1.267 24 H -0.272 1.272 25 H -0.259 1.259 26 C -0.033 4.033 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.182 0.818 34 H 0.190 0.810 35 H 0.425 0.575 36 H 0.409 0.591 37 H 0.018 0.982 38 H 0.013 0.987 39 H 0.273 0.727 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.620 -3.606 3.718 30.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.841 5.841 3 C -0.063 4.063 4 S 2.795 3.205 5 O -0.978 6.978 6 O -0.957 6.957 7 C -0.758 4.758 8 C -0.033 4.033 9 C -0.154 4.154 10 C 0.093 3.907 11 F -0.104 7.104 12 C 0.011 3.989 13 N -0.321 5.321 14 C 0.394 3.606 15 O -0.492 6.492 16 N -0.361 5.361 17 C 0.125 3.875 18 C -0.584 4.584 19 H 0.080 0.920 20 C -0.170 4.170 21 N -0.568 5.568 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.197 1.197 25 H -0.183 1.183 26 C -0.055 4.055 27 H 0.095 0.905 28 H 0.118 0.882 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.123 0.877 33 H 0.200 0.800 34 H 0.207 0.793 35 H 0.264 0.736 36 H 0.245 0.755 37 H 0.036 0.964 38 H 0.031 0.969 39 H 0.082 0.918 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -29.000 -4.081 5.411 29.781 hybrid contribution 1.191 0.245 -1.428 1.875 sum -27.809 -3.836 3.983 28.354 Atomic orbital electron populations 1.21963 0.75896 1.05464 1.03981 1.57134 1.16643 1.20636 1.89694 1.21733 0.96362 0.84920 1.03256 1.01488 0.72323 0.72943 0.73720 1.93596 1.42261 1.84851 1.77133 1.93531 1.66101 1.59419 1.76638 1.30982 1.03367 1.14559 1.26870 1.21130 0.97444 0.91300 0.93379 1.21493 0.96597 1.02109 0.95173 1.17735 0.96489 0.96763 0.79685 1.91532 1.95182 1.89853 1.33880 1.17763 0.87827 0.99481 0.93802 1.42348 1.09006 1.69575 1.11128 1.16138 0.80516 0.78786 0.85141 1.90893 1.83031 1.60918 1.14331 1.45142 1.13195 1.65165 1.12551 1.19084 0.81595 0.94889 0.91981 1.21226 0.98138 1.43385 0.95693 0.92021 1.25524 0.95600 0.93699 1.02222 1.69966 1.06532 1.43074 1.37235 0.85919 0.79144 0.78884 0.80351 1.19153 1.19702 1.18306 1.21009 0.95056 0.96479 0.92915 0.90453 0.88228 0.89850 0.91507 0.92409 0.87692 0.80040 0.79300 0.73610 0.75484 0.96360 0.96862 0.91758 0.83720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 10.66 127.77 1.36 2.00 16 2 N -1.00 -16.42 3.58 -562.67 -2.02 -18.44 16 3 C 0.08 1.26 10.29 127.77 1.31 2.57 16 4 S 2.71 65.39 5.65 -56.49 -0.32 65.07 16 5 O -0.99 -33.69 16.35 -128.00 -2.09 -35.78 16 6 O -0.97 -24.21 15.87 -128.00 -2.03 -26.24 16 7 C -0.67 -15.72 5.97 22.26 0.13 -15.58 16 8 C -0.01 -0.20 9.52 22.29 0.21 0.01 16 9 C -0.13 -2.00 10.02 22.29 0.22 -1.78 16 10 C 0.12 2.44 7.31 22.48 0.16 2.60 16 11 F -0.13 -2.52 16.82 44.97 0.76 -1.76 16 12 C 0.11 3.00 6.44 38.15 0.25 3.25 16 13 N -0.67 -19.34 5.32 -316.99 -1.69 -21.03 16 14 C 0.69 26.58 8.37 179.05 1.50 28.08 16 15 O -0.61 -28.22 13.51 -3.97 -0.05 -28.28 16 16 N -0.71 -27.99 5.55 -482.31 -2.68 -30.67 16 17 C 0.25 12.07 4.50 85.63 0.39 12.46 16 18 C -0.55 -29.73 9.83 25.60 0.25 -29.48 16 19 H 0.06 3.50 7.84 -2.91 -0.02 3.48 16 20 C 0.03 1.70 5.47 84.65 0.46 2.16 16 21 N -0.93 -55.05 13.96 21.44 0.30 -54.75 16 22 Si 0.93 44.00 27.47 68.60 1.88 45.88 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.26 -12.14 6.54 99.48 0.65 -11.48 16 26 C -0.03 -0.97 8.19 22.38 0.18 -0.79 16 27 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.10 0.50 8.07 -2.39 -0.02 0.48 16 29 H 0.08 0.79 7.02 -2.39 -0.02 0.78 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.11 7.79 -2.39 -0.02 1.09 16 32 H 0.10 0.94 8.07 -2.39 -0.02 0.92 16 33 H 0.18 1.76 7.60 -2.91 -0.02 1.73 16 34 H 0.19 1.29 8.06 -2.91 -0.02 1.27 16 35 H 0.43 9.37 8.47 -92.71 -0.79 8.59 16 36 H 0.41 13.84 8.34 -92.71 -0.77 13.07 16 37 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 38 H 0.01 0.68 7.57 -2.39 -0.02 0.66 16 39 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 40 H 0.15 5.30 5.34 -2.91 -0.02 5.29 16 Total: -1.00 -79.21 357.37 -2.00 -81.21 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -0.50 Total: 19.31 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 6.44 Total: 5.49 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -6.08 Total: -124.89 kcal Atomic # 8 Polarization: -86.12 SS G_CDS: -4.18 Total: -90.30 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.76 Total: -1.76 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.88 Total: 45.88 kcal Atomic # 16 Polarization: 65.39 SS G_CDS: -0.32 Total: 65.07 kcal Total: -79.21 -2.00 -81.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488491120.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.660 kcal (2) G-P(sol) polarization free energy of solvation -79.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds