Wall clock time and date at job start Wed Apr 1 2020 03:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45200 * 109.47274 * 2 1 4 4 C 1.34892 * 117.00361 * 179.97438 * 3 2 1 5 5 O 1.21625 * 119.99743 * 359.97438 * 4 3 2 6 6 C 1.46471 * 120.00466 * 180.02562 * 4 3 2 7 7 C 1.36638 * 125.99968 * 180.02562 * 6 4 3 8 8 C 1.40304 * 106.70291 * 180.02562 * 7 6 4 9 9 C 1.35162 * 107.12832 * 359.97438 * 8 7 6 10 10 S 1.76206 * 125.60799 * 180.02562 * 9 8 7 11 11 O 1.42092 * 106.40186 * 336.46046 * 10 9 8 12 12 O 1.42106 * 106.40074 * 203.54082 * 10 9 8 13 13 N 1.65599 * 107.21692 * 90.00370 * 10 9 8 14 14 C 1.46506 * 119.99913 * 89.99694 * 13 10 9 15 15 C 1.50699 * 109.46928 * 95.00113 * 14 13 10 16 16 H 1.08003 * 119.99963 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99865 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00518 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99987 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46922 * 90.00621 * 19 17 15 21 21 H 1.48500 * 109.47411 * 210.00442 * 19 17 15 22 22 H 1.48494 * 109.47378 * 330.00637 * 19 17 15 23 23 C 1.46498 * 120.00006 * 269.99928 * 13 10 9 24 24 C 1.53002 * 109.47146 * 119.99994 * 23 13 10 25 25 C 1.52996 * 109.46929 * 239.99981 * 23 13 10 26 26 O 1.33913 * 108.78449 * 0.26724 * 9 8 7 27 27 H 1.08998 * 109.47543 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47648 * 300.00590 * 1 2 3 29 29 H 1.09000 * 109.46774 * 60.00320 * 1 2 3 30 30 H 1.08995 * 109.47664 * 239.99802 * 2 1 3 31 31 H 1.09000 * 109.46774 * 119.99680 * 2 1 3 32 32 H 1.08003 * 126.64618 * 359.97438 * 7 6 4 33 33 H 1.08001 * 126.43286 * 180.02562 * 8 7 6 34 34 H 1.09004 * 109.47073 * 214.99941 * 14 13 10 35 35 H 1.09000 * 109.47212 * 335.00023 * 14 13 10 36 36 H 0.96992 * 120.00316 * 179.97438 * 18 17 15 37 37 H 1.08997 * 109.46883 * 359.97438 * 23 13 10 38 38 H 1.08997 * 109.47003 * 60.00402 * 24 23 13 39 39 H 1.09002 * 109.46829 * 180.02562 * 24 23 13 40 40 H 1.08998 * 109.47168 * 299.99834 * 24 23 13 41 41 H 1.08997 * 109.47276 * 60.00130 * 25 23 13 42 42 H 1.09002 * 109.47034 * 179.97438 * 25 23 13 43 43 H 1.08997 * 109.47617 * 299.99841 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3513 1.5457 0.0005 5 8 4.0922 0.5812 0.0015 6 6 3.9112 2.8992 0.0011 7 6 5.2397 3.2188 0.0012 8 6 5.3174 4.6197 0.0025 9 6 4.0498 5.0887 0.0025 10 16 3.5848 6.7883 0.0032 11 8 4.6842 7.5049 0.5481 12 8 2.2733 6.8452 0.5475 13 7 3.4555 7.2618 -1.5784 14 6 2.1746 7.1363 -2.2782 15 6 1.4298 8.4441 -2.2011 16 1 1.8672 9.2848 -1.6830 17 6 0.1907 8.5677 -2.7929 18 7 -0.3416 7.5442 -3.4242 19 14 -0.7328 10.1887 -2.6967 20 1 -0.3680 11.0359 -3.8604 21 1 -2.1945 9.9274 -2.7135 22 1 -0.3700 10.8913 -1.4398 23 6 4.6221 7.8060 -2.2777 24 6 4.9466 6.9281 -3.4880 25 6 4.3166 9.2297 -2.7475 26 8 3.2054 4.0493 0.0073 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 6.0691 2.5270 0.0012 33 1 6.2206 5.2119 0.0025 34 1 2.3546 6.8817 -3.3227 35 1 1.5802 6.3515 -1.8102 36 1 -1.2135 7.6311 -3.8402 37 1 5.4763 7.8226 -1.6009 38 1 4.0922 6.9121 -4.1647 39 1 5.8148 7.3329 -4.0081 40 1 5.1642 5.9139 -3.1533 41 1 4.0854 9.8551 -1.8853 42 1 5.1847 9.6348 -3.2675 43 1 3.4622 9.2136 -3.4242 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530879763.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:47 Heat of formation + Delta-G solvation = -159.371728 kcal Electronic energy + Delta-G solvation = -29214.525058 eV Core-core repulsion = 24967.563891 eV Total energy + Delta-G solvation = -4246.961167 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.117 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.09269 -41.55207 -38.63293 -38.40007 -38.03983 -37.07649 -34.77376 -34.58693 -32.95009 -32.29366 -31.57573 -28.91627 -27.87040 -26.29879 -24.79115 -23.95912 -23.37128 -22.19828 -21.85429 -20.51581 -19.70007 -19.10533 -18.77784 -18.40008 -18.17119 -17.98127 -17.23594 -17.04260 -16.39154 -15.57923 -15.32943 -15.19928 -15.04602 -14.97429 -14.71912 -14.57642 -14.34781 -14.07506 -13.82481 -13.70013 -13.53728 -13.36853 -13.13742 -13.06937 -12.94634 -12.80405 -12.71692 -12.63808 -12.60485 -12.38448 -12.24647 -12.16062 -12.08081 -11.69395 -11.53612 -11.50759 -11.37064 -10.58511 -10.50345 -9.88367 -8.14210 -6.22738 -1.01987 -0.76811 0.57586 0.95476 1.42604 1.45529 1.46049 1.55103 1.68026 1.98310 2.44617 2.55423 3.17776 3.23166 3.46486 3.49779 3.87134 3.93410 3.93662 3.96635 4.07110 4.25689 4.33131 4.36589 4.44253 4.54631 4.64915 4.84716 4.84859 4.92630 4.94413 4.97574 5.13435 5.16735 5.22675 5.24899 5.28386 5.37491 5.59447 5.70545 5.82514 5.95132 6.15237 6.24035 6.84243 7.44092 8.94372 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.010751 B = 0.004026 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.717723 B = 6952.898071 C = 8508.107046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.557 3.443 5 O -0.488 6.488 6 C -0.048 4.048 7 C -0.108 4.108 8 C -0.090 4.090 9 C -0.553 4.553 10 S 2.710 3.290 11 O -0.945 6.945 12 O -0.970 6.970 13 N -0.969 5.969 14 C 0.269 3.731 15 C -0.530 4.530 16 H 0.063 0.937 17 C 0.012 3.988 18 N -0.928 5.928 19 Si 0.951 3.049 20 H -0.266 1.266 21 H -0.286 1.286 22 H -0.272 1.272 23 C 0.133 3.867 24 C -0.158 4.158 25 C -0.152 4.152 26 O -0.118 6.118 27 H 0.113 0.887 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.211 0.789 33 H 0.215 0.785 34 H 0.039 0.961 35 H 0.010 0.990 36 H 0.265 0.735 37 H 0.112 0.888 38 H 0.046 0.954 39 H 0.094 0.906 40 H 0.060 0.940 41 H 0.042 0.958 42 H 0.087 0.913 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.116 -11.210 3.296 16.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.401 3.599 5 O -0.378 6.378 6 C -0.102 4.102 7 C -0.127 4.127 8 C -0.110 4.110 9 C -0.684 4.684 10 S 2.795 3.205 11 O -0.935 6.935 12 O -0.960 6.960 13 N -0.811 5.811 14 C 0.146 3.854 15 C -0.569 4.569 16 H 0.081 0.919 17 C -0.187 4.187 18 N -0.568 5.568 19 Si 0.777 3.223 20 H -0.191 1.191 21 H -0.211 1.211 22 H -0.197 1.197 23 C 0.028 3.972 24 C -0.216 4.216 25 C -0.211 4.211 26 O -0.012 6.012 27 H 0.131 0.869 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.228 0.772 33 H 0.232 0.768 34 H 0.057 0.943 35 H 0.028 0.972 36 H 0.073 0.927 37 H 0.129 0.871 38 H 0.066 0.934 39 H 0.113 0.887 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.106 0.894 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.666 -11.145 3.943 16.609 hybrid contribution -0.837 -0.111 -0.273 0.887 sum 10.829 -11.257 3.670 16.045 Atomic orbital electron populations 1.21894 0.90781 1.04834 1.03470 1.23560 0.96982 0.77437 1.03979 1.86740 1.22180 1.35703 1.82972 1.19058 0.81663 0.85964 0.73174 1.90925 1.60821 1.39441 1.46652 1.21891 0.92205 0.84825 1.11272 1.22592 0.94927 0.96181 0.99008 1.22444 0.97059 0.95163 0.96372 1.36754 0.98610 1.13860 1.19202 1.01777 0.72860 0.72247 0.73642 1.93572 1.55212 1.67536 1.77163 1.93578 1.39153 1.85808 1.77508 1.57517 1.18447 1.74340 1.30779 1.18715 0.77758 0.96036 0.92937 1.21785 1.02646 0.98437 1.34036 0.91873 1.25680 0.98070 0.99811 0.95129 1.70022 1.18053 1.31875 1.36864 0.85653 0.77699 0.80166 0.78804 1.19137 1.21126 1.19659 1.21203 0.86037 0.94568 0.95355 1.22149 1.02409 0.99559 0.97529 1.22111 1.02640 0.94827 1.01568 1.84325 1.35472 1.12727 1.68686 0.86863 0.91682 0.92039 0.89772 0.89482 0.77219 0.76783 0.94333 0.97172 0.92652 0.87069 0.93440 0.88721 0.92142 0.93863 0.89446 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 10.29 71.98 0.74 -1.74 16 2 C 0.05 1.04 6.20 71.98 0.45 1.49 16 3 O -0.36 -10.34 10.23 -56.69 -0.58 -10.92 16 4 C 0.56 16.09 7.93 69.97 0.55 16.65 16 5 O -0.49 -13.85 16.66 19.43 0.32 -13.52 16 6 C -0.05 -1.44 7.18 24.04 0.17 -1.27 16 7 C -0.11 -2.45 10.62 22.40 0.24 -2.22 16 8 C -0.09 -2.16 10.58 22.06 0.23 -1.92 16 9 C -0.55 -18.36 7.35 67.11 0.49 -17.87 16 10 S 2.71 105.31 5.79 -56.49 -0.33 104.98 16 11 O -0.94 -34.32 16.39 -128.00 -2.10 -36.42 16 12 O -0.97 -47.54 16.99 -127.91 -2.17 -49.72 16 13 N -0.97 -38.16 2.73 -497.41 -1.36 -39.52 16 14 C 0.27 13.22 4.67 85.63 0.40 13.62 16 15 C -0.53 -28.59 7.53 25.60 0.19 -28.40 16 16 H 0.06 3.35 7.07 -2.91 -0.02 3.33 16 17 C 0.01 0.67 5.46 84.65 0.46 1.13 16 18 N -0.93 -54.06 13.29 21.45 0.28 -53.77 16 19 Si 0.95 43.91 29.54 68.60 2.03 45.94 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 23 C 0.13 4.08 3.24 44.99 0.15 4.23 16 24 C -0.16 -4.09 9.16 71.98 0.66 -3.43 16 25 C -0.15 -4.84 8.20 71.98 0.59 -4.25 16 26 O -0.12 -4.35 10.67 -4.87 -0.05 -4.40 16 27 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.21 3.13 8.06 -2.91 -0.02 3.11 16 33 H 0.22 3.35 8.06 -2.91 -0.02 3.32 16 34 H 0.04 1.92 6.45 -2.38 -0.02 1.90 16 35 H 0.01 0.57 7.61 -2.39 -0.02 0.55 16 36 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 37 H 0.11 2.81 6.91 -2.39 -0.02 2.80 16 38 H 0.05 1.47 6.69 -2.39 -0.02 1.45 16 39 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.04 1.45 7.93 -2.39 -0.02 1.43 16 42 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.06 2.16 6.65 -2.39 -0.02 2.14 16 Total: -1.00 -73.35 380.89 2.40 -70.95 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.03 Total: 10.39 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: 5.33 Total: -23.98 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -1.07 Total: -93.29 kcal Atomic # 8 Polarization: -110.40 SS G_CDS: -4.58 Total: -114.98 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 105.31 SS G_CDS: -0.33 Total: 104.98 kcal Total: -73.35 2.40 -70.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530879763.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.425 kcal (2) G-P(sol) polarization free energy of solvation -73.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds