Wall clock time and date at job start Wed Apr 1 2020 04:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86797 * 119.99863 * 2 1 4 4 H 1.48493 * 109.47433 * 359.97438 * 3 2 1 5 5 H 1.48507 * 109.47399 * 119.99693 * 3 2 1 6 6 H 1.48501 * 109.46727 * 239.99456 * 3 2 1 7 7 C 1.39960 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99807 * 154.81475 * 7 2 1 9 9 C 1.41067 * 120.00035 * 334.82627 * 7 2 1 10 10 C 1.40732 * 120.30097 * 334.81866 * 9 7 2 11 11 C 1.36475 * 119.94463 * 179.97438 * 10 9 7 12 12 C 1.38864 * 120.57506 * 359.97438 * 11 10 9 13 13 C 1.38223 * 120.61570 * 0.02562 * 12 11 10 14 14 C 1.38647 * 120.03661 * 359.73851 * 13 12 11 15 15 N 1.39120 * 120.28887 * 180.26219 * 14 13 12 16 16 C 1.34786 * 119.99860 * 325.34680 * 15 14 13 17 17 O 1.21281 * 119.99592 * 4.36583 * 16 15 14 18 18 C 1.50693 * 120.00039 * 184.37270 * 16 15 14 19 19 S 1.80999 * 109.47072 * 179.97438 * 18 16 15 20 20 C 1.76204 * 100.00074 * 179.97438 * 19 18 16 21 21 N 1.31545 * 126.45144 * 0.02898 * 20 19 18 22 22 N 1.28421 * 110.49958 * 179.97438 * 21 20 19 23 23 N 1.28904 * 110.34012 * 359.97438 * 22 21 20 24 24 N 1.35393 * 126.45240 * 179.70686 * 20 19 18 25 25 C 1.46506 * 127.38523 * 359.97438 * 24 20 19 26 26 C 1.52997 * 117.49943 * 188.61378 * 25 24 20 27 27 C 1.52993 * 60.00257 * 252.51051 * 26 25 24 28 28 H 0.97005 * 119.99936 * 174.63801 * 1 2 3 29 29 H 1.08000 * 120.03259 * 359.95633 * 10 9 7 30 30 H 1.07997 * 119.70842 * 179.97438 * 11 10 9 31 31 H 1.07995 * 119.68822 * 179.97438 * 12 11 10 32 32 H 1.08002 * 119.98307 * 180.02562 * 13 12 11 33 33 H 0.96996 * 120.00637 * 145.34383 * 15 14 13 34 34 H 1.09004 * 109.46985 * 299.99600 * 18 16 15 35 35 H 1.08999 * 109.47536 * 59.99336 * 18 16 15 36 36 H 1.08998 * 115.54634 * 334.32605 * 25 24 20 37 37 H 1.09004 * 117.49764 * 0.02562 * 26 25 24 38 38 H 1.09002 * 117.49859 * 145.01525 * 26 25 24 39 39 H 1.08996 * 117.50381 * 252.50665 * 27 26 25 40 40 H 1.09004 * 117.51665 * 107.48256 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 1.2775 2.7464 -0.0006 5 1 3.0962 1.6965 1.2126 6 1 3.0963 1.6963 -1.2125 7 6 2.0083 -1.2121 0.0005 8 1 3.0113 -1.2566 -0.3975 9 6 1.4035 -2.3755 0.5207 10 6 0.3825 -2.2750 1.4840 11 6 -0.1980 -3.4053 1.9819 12 6 0.2093 -4.6593 1.5462 13 6 1.2100 -4.7853 0.6010 14 6 1.8137 -3.6538 0.0744 15 7 2.8176 -3.7744 -0.8812 16 6 3.6806 -4.8082 -0.8252 17 8 3.5343 -5.6756 0.0097 18 6 4.8272 -4.8862 -1.8000 19 16 5.7986 -6.3775 -1.4707 20 6 7.0335 -6.2198 -2.7176 21 7 7.1357 -5.2477 -3.5979 22 7 8.1500 -5.4379 -4.3622 23 7 8.7609 -6.5245 -4.0340 24 7 8.0594 -7.0733 -2.9463 25 6 8.3710 -8.3053 -2.2172 26 6 9.6993 -8.9960 -2.5324 27 6 8.3839 -9.6125 -3.0121 28 1 -0.4850 -0.8364 -0.0785 29 1 0.0587 -1.3042 1.8292 30 1 -0.9809 -3.3238 2.7213 31 1 -0.2595 -5.5443 1.9501 32 1 1.5185 -5.7657 0.2690 33 1 2.8966 -3.1145 -1.5877 34 1 4.4373 -4.9234 -2.8173 35 1 5.4615 -4.0072 -1.6859 36 1 8.0141 -8.3455 -1.1881 37 1 10.3416 -8.5335 -3.2819 38 1 10.2168 -9.4906 -1.7104 39 1 8.0359 -10.5129 -2.5059 40 1 8.1602 -9.5560 -4.0775 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000555525968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:49 Heat of formation + Delta-G solvation = 131.174927 kcal Electronic energy + Delta-G solvation = -25976.663242 eV Core-core repulsion = 22114.195546 eV Total energy + Delta-G solvation = -3862.467697 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.09345 -39.80960 -38.17223 -37.53255 -34.14206 -33.93811 -33.42772 -32.48419 -30.63409 -29.43678 -28.07143 -25.68039 -25.12927 -23.69466 -23.04700 -22.19647 -21.77588 -21.05338 -19.75904 -18.69178 -18.08841 -17.33604 -16.80413 -16.69474 -16.50734 -15.71704 -15.47907 -14.86367 -14.61297 -14.28733 -14.13837 -13.98016 -13.61911 -13.38360 -12.85180 -12.75956 -12.67211 -12.44620 -12.32884 -12.20723 -12.07337 -11.55929 -11.52404 -11.22391 -11.15769 -11.09613 -10.93988 -10.78363 -10.48356 -10.46575 -10.31341 -9.82955 -9.55309 -9.21836 -9.02314 -8.22776 -7.71565 -7.48267 -7.08778 -4.57600 0.42247 0.57861 1.53442 1.66753 1.97512 2.36483 2.71619 2.97462 3.06139 3.09236 3.19894 3.28959 3.58567 3.68007 3.91510 4.03832 4.16366 4.33421 4.46159 4.82024 4.86620 4.89965 4.97832 5.04905 5.08738 5.21153 5.32086 5.37039 5.44232 5.80953 6.12657 6.22415 6.38589 6.67959 6.84245 7.01934 7.28173 7.37853 7.58801 7.66255 7.80813 7.90668 8.10564 8.15994 8.16322 8.50459 8.63938 8.76980 9.91866 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.015099 B = 0.002525 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.981799 B =11087.812166 C =12647.366838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.041 3.959 3 Si 1.063 2.937 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.076 0.924 9 C 0.094 3.906 10 C -0.208 4.208 11 C -0.088 4.088 12 C -0.242 4.242 13 C -0.068 4.068 14 C -0.002 4.002 15 N -0.621 5.621 16 C 0.516 3.484 17 O -0.530 6.530 18 C -0.151 4.151 19 S 0.121 5.879 20 C 0.204 3.796 21 N -0.336 5.336 22 N -0.032 5.032 23 N -0.088 5.088 24 N -0.337 5.337 25 C 0.057 3.943 26 C -0.155 4.155 27 C -0.164 4.164 28 H 0.301 0.699 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.407 0.593 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.159 0.841 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.170 -13.210 -4.386 19.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.182 4.182 3 Si 0.886 3.114 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.094 0.906 9 C 0.089 3.911 10 C -0.228 4.228 11 C -0.107 4.107 12 C -0.262 4.262 13 C -0.088 4.088 14 C -0.096 4.096 15 N -0.263 5.263 16 C 0.300 3.700 17 O -0.408 6.408 18 C -0.303 4.303 19 S 0.345 5.655 20 C -0.180 4.180 21 N -0.193 5.193 22 N -0.027 5.027 23 N -0.075 5.075 24 N -0.134 5.134 25 C -0.047 4.047 26 C -0.193 4.193 27 C -0.203 4.203 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.129 0.871 33 H 0.243 0.757 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.176 0.824 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 13.299 -12.303 -4.065 18.568 hybrid contribution 0.197 -0.872 -0.644 1.102 sum 13.496 -13.175 -4.708 19.440 Atomic orbital electron populations 1.70476 1.08207 1.34457 1.28178 1.26992 0.95626 1.04266 0.91294 0.83654 0.75719 0.73901 0.78105 1.19787 1.19968 1.20019 1.20361 1.02798 0.94098 1.37862 0.90630 1.17471 0.92259 0.90844 0.90481 1.20768 1.02979 0.97472 1.01549 1.20426 0.98480 0.93151 0.98668 1.20260 1.04022 0.95968 1.05960 1.20685 0.94494 0.96725 0.96919 1.17540 0.97917 0.94144 0.99966 1.42636 1.28509 1.26033 1.29127 1.19423 0.82419 0.83614 0.84560 1.90702 1.73830 1.38546 1.37744 1.23895 1.00031 1.01053 1.05293 1.86467 1.20112 1.29435 1.29441 1.28301 0.96396 0.90734 1.02537 1.74987 1.16070 1.22140 1.06116 1.77848 1.00688 1.07738 1.16431 1.82408 1.17554 1.06874 1.00647 1.50920 1.18800 1.19343 1.24386 1.22250 1.06263 0.79818 0.96342 1.23417 0.90333 1.00981 1.04537 1.23539 1.00458 0.94740 1.01540 0.88527 0.87272 0.89081 0.88902 0.87077 0.75738 0.85359 0.85198 0.82400 0.86740 0.86368 0.86215 0.87569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.62 12.32 55.55 0.68 -18.94 16 2 C 0.04 0.97 4.95 -17.33 -0.09 0.88 16 3 Si 1.06 20.25 30.00 -169.99 -5.10 15.15 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 7 C -0.52 -12.53 8.35 -37.86 -0.32 -12.85 16 8 H 0.08 1.72 7.39 -52.49 -0.39 1.33 16 9 C 0.09 2.29 5.32 -106.65 -0.57 1.73 16 10 C -0.21 -5.05 7.87 -39.28 -0.31 -5.36 16 11 C -0.09 -1.98 9.97 -39.99 -0.40 -2.38 16 12 C -0.24 -5.34 10.04 -39.36 -0.39 -5.74 16 13 C -0.07 -1.54 8.69 -39.44 -0.34 -1.88 16 14 C 0.00 -0.05 6.34 -83.17 -0.53 -0.58 16 15 N -0.62 -11.65 4.90 -9.48 -0.05 -11.70 16 16 C 0.52 8.78 7.69 -10.98 -0.08 8.70 16 17 O -0.53 -10.51 13.28 5.56 0.07 -10.43 16 18 C -0.15 -1.92 5.72 36.00 0.21 -1.71 16 19 S 0.12 1.44 21.10 -107.50 -2.27 -0.83 16 20 C 0.20 2.58 8.15 -89.18 -0.73 1.85 16 21 N -0.34 -4.92 11.57 30.50 0.35 -4.57 16 22 N -0.03 -0.48 13.38 60.35 0.81 0.33 16 23 N -0.09 -1.18 13.45 60.35 0.81 -0.37 16 24 N -0.34 -3.84 4.01 -54.80 -0.22 -4.06 16 25 C 0.06 0.42 6.73 -67.93 -0.46 -0.04 16 26 C -0.15 -0.83 10.22 -26.74 -0.27 -1.10 16 27 C -0.16 -0.89 10.46 -26.73 -0.28 -1.17 16 28 H 0.30 7.66 6.62 -40.82 -0.27 7.39 16 29 H 0.11 2.72 6.45 -52.49 -0.34 2.38 16 30 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.11 2.45 6.20 -52.49 -0.33 2.13 16 33 H 0.41 6.83 7.95 -40.82 -0.32 6.50 16 34 H 0.13 1.42 8.14 -51.91 -0.42 1.00 16 35 H 0.13 1.53 8.14 -51.92 -0.42 1.11 16 36 H 0.16 0.89 8.08 -51.93 -0.42 0.47 16 37 H 0.11 0.75 7.91 -51.93 -0.41 0.34 16 38 H 0.12 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.12 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -29.86 363.23 -8.22 -38.08 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -4.23 Total: 11.50 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -4.56 Total: -19.63 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 2.39 Total: -39.30 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.07 Total: -10.43 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.10 Total: 15.15 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.27 Total: -0.83 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.86 -8.22 -38.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555525968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.256 kcal (2) G-P(sol) polarization free energy of solvation -29.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds