Wall clock time and date at job start Wed Apr 1 2020 03:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47173 * 2 1 4 4 C 1.50699 * 109.47203 * 120.00513 * 2 1 3 5 5 H 1.08002 * 120.00516 * 119.99366 * 4 2 1 6 6 C 1.37884 * 119.99783 * 299.99666 * 4 2 1 7 7 N 1.31514 * 119.99707 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99956 * 180.27458 * 6 4 2 9 9 H 1.48497 * 109.47172 * 179.72730 * 8 6 4 10 10 H 1.48506 * 109.47132 * 299.72429 * 8 6 4 11 11 H 1.48501 * 109.47173 * 59.72550 * 8 6 4 12 12 C 1.53004 * 109.46866 * 240.00064 * 2 1 3 13 13 S 1.81403 * 109.47190 * 60.00356 * 12 2 1 14 14 O 1.42095 * 110.53913 * 291.62379 * 13 12 2 15 15 O 1.42099 * 110.54065 * 68.37311 * 13 12 2 16 16 N 1.65593 * 104.44946 * 179.97438 * 13 12 2 17 17 C 1.47159 * 120.98205 * 89.99810 * 16 13 12 18 18 C 1.53293 * 108.38607 * 230.51126 * 17 16 13 19 19 O 1.42964 * 109.22219 * 307.69628 * 18 17 16 20 20 C 1.42965 * 114.16453 * 62.58084 * 19 18 17 21 21 H 1.09004 * 109.51464 * 57.34389 * 20 19 18 22 22 C 1.53002 * 109.51403 * 177.44015 * 20 19 18 23 23 F 1.39903 * 109.46775 * 60.00400 * 22 20 19 24 24 F 1.39901 * 109.47263 * 179.97438 * 22 20 19 25 25 F 1.39900 * 109.47241 * 300.00414 * 22 20 19 26 26 C 1.47152 * 120.98266 * 269.71636 * 16 13 12 27 27 H 1.08994 * 109.46844 * 300.00095 * 1 2 3 28 28 H 1.08998 * 109.46846 * 59.99410 * 1 2 3 29 29 H 1.08997 * 109.47361 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47093 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47717 * 300.00057 * 3 2 1 32 32 H 1.09001 * 109.47144 * 60.00513 * 3 2 1 33 33 H 0.97005 * 119.99656 * 179.97438 * 7 6 4 34 34 H 1.09006 * 109.47053 * 179.97438 * 12 2 1 35 35 H 1.08997 * 109.47419 * 300.00318 * 12 2 1 36 36 H 1.09000 * 109.67866 * 350.23819 * 17 16 13 37 37 H 1.09007 * 109.67599 * 110.75327 * 17 16 13 38 38 H 1.09000 * 109.51013 * 67.61793 * 18 17 16 39 39 H 1.08996 * 109.51053 * 187.77580 * 18 17 16 40 40 H 1.09001 * 109.68051 * 249.21100 * 26 16 13 41 41 H 1.08997 * 109.67935 * 9.76687 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3283 -1.1156 4.0079 9 1 1.8377 -0.4126 5.2204 10 1 1.8338 -2.5159 4.0136 11 1 3.8133 -1.1151 4.0021 12 6 2.0400 -0.7213 -1.2493 13 16 1.4353 0.1340 -2.7304 14 8 0.0280 -0.0182 -2.8544 15 8 2.0480 1.4101 -2.8543 16 7 2.0541 -0.7399 -3.9936 17 6 1.3072 -1.8684 -4.5718 18 6 2.2414 -3.0818 -4.6408 19 8 3.4481 -2.7093 -5.3108 20 6 4.2005 -1.6951 -4.6405 21 1 4.4411 -2.0276 -3.6307 22 6 5.4943 -1.4250 -5.4114 23 9 5.1845 -0.9960 -6.7065 24 9 6.2295 -0.4321 -4.7552 25 9 6.2514 -2.5996 -5.4778 26 6 3.3642 -0.4071 -4.5752 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 0.7082 1.1607 3.4845 34 1 3.1300 -0.7209 -1.2496 35 1 1.6766 -1.7489 -1.2494 36 1 0.4485 -2.1014 -3.9421 37 1 0.9675 -1.6085 -5.5745 38 1 2.4749 -3.4193 -3.6310 39 1 1.7531 -3.8863 -5.1907 40 1 3.2285 -0.0029 -5.5784 41 1 3.8683 0.3279 -3.9477 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590747991.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:54 Heat of formation + Delta-G solvation = -260.056714 kcal Electronic energy + Delta-G solvation = -30756.979462 eV Core-core repulsion = 25963.795526 eV Total energy + Delta-G solvation = -4793.183936 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.105 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.34592 -47.87168 -47.80668 -39.75100 -36.82393 -36.39740 -35.57837 -35.08033 -32.58249 -31.75220 -28.32354 -26.84537 -25.95976 -25.81662 -25.30343 -23.58036 -21.72884 -19.56324 -19.17797 -18.84150 -18.53285 -18.03414 -17.53219 -16.64551 -16.11906 -16.05872 -15.71590 -15.47583 -14.91274 -14.81840 -14.70457 -14.61485 -14.34424 -14.24862 -14.12236 -13.95056 -13.92661 -13.26188 -13.17543 -12.78508 -12.61159 -12.23179 -12.20989 -12.15374 -11.87262 -11.53189 -11.23709 -11.12861 -11.08489 -10.96872 -10.82143 -10.81338 -10.44634 -10.37707 -10.18756 -9.75474 -9.67381 -9.12440 -8.77067 -8.47447 -6.10907 -4.23588 0.56710 2.14155 2.70010 3.04216 3.21908 3.28085 3.29174 3.51454 3.62587 4.13104 4.16880 4.23116 4.30731 4.37264 4.49373 4.60279 4.79893 4.92266 4.96566 5.14381 5.18880 5.35424 5.48013 5.51018 5.60423 5.76042 6.23310 6.25348 6.39785 6.59147 6.69111 6.79670 6.93582 7.21354 7.40225 7.59851 7.89113 8.00088 8.23781 8.74498 9.42361 10.90374 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.014945 B = 0.003761 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.094168 B = 7443.342072 C = 8114.355613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 C -0.164 4.164 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.897 3.103 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 C -0.580 4.580 13 S 2.588 3.412 14 O -0.954 6.954 15 O -0.955 6.955 16 N -1.010 6.010 17 C 0.083 3.917 18 C 0.049 3.951 19 O -0.359 6.359 20 C 0.029 3.971 21 H 0.112 0.888 22 C 0.469 3.531 23 F -0.173 7.173 24 F -0.170 7.170 25 F -0.174 7.174 26 C 0.094 3.906 27 H 0.096 0.904 28 H 0.027 0.973 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.027 0.973 32 H 0.096 0.904 33 H 0.264 0.736 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.131 -6.767 -15.054 17.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.080 3.920 3 C -0.222 4.222 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.211 1.211 10 H -0.203 1.203 11 H -0.202 1.202 12 C -0.714 4.714 13 S 2.688 3.312 14 O -0.944 6.944 15 O -0.945 6.945 16 N -0.845 5.845 17 C -0.042 4.042 18 C -0.029 4.029 19 O -0.278 6.278 20 C -0.032 4.032 21 H 0.130 0.870 22 C 0.414 3.586 23 F -0.155 7.155 24 F -0.152 7.152 25 F -0.155 7.155 26 C -0.032 4.032 27 H 0.115 0.885 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.126 0.874 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.136 0.864 40 H 0.110 0.890 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.559 -5.931 -15.246 16.982 hybrid contribution 0.878 -0.942 1.235 1.784 sum 5.436 -6.873 -14.011 16.526 Atomic orbital electron populations 1.22278 0.96822 1.00641 1.02384 1.17945 0.92885 0.92241 0.88897 1.22285 0.99790 0.97739 1.02397 1.20869 1.32010 1.12194 0.89310 0.92357 1.24935 0.94808 0.94947 0.98952 1.69785 1.36075 1.22464 1.23717 0.86584 0.79206 0.79666 0.82100 1.21123 1.20263 1.20234 1.30597 1.11256 1.12843 1.16734 1.06058 0.74841 0.75141 0.75188 1.93551 1.28950 1.86367 1.85543 1.93554 1.78024 1.37405 1.85515 1.58282 1.28100 1.47413 1.50684 1.22133 0.94854 0.85828 1.01400 1.23197 0.84119 0.96757 0.98782 1.87946 1.35959 1.54857 1.49015 1.23660 0.89414 0.92938 0.97207 0.87022 1.19974 0.85811 0.74509 0.78308 1.93209 1.92867 1.89852 1.39527 1.93242 1.78872 1.62157 1.80907 1.93217 1.78155 1.47891 1.96276 1.22013 0.83780 0.94771 1.02657 0.88537 0.95452 0.94434 0.94380 0.95413 0.88540 0.92588 0.86401 0.86318 0.87419 0.89933 0.91426 0.86417 0.88955 0.86754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 7.78 37.16 0.29 -3.55 16 2 C 0.08 1.90 0.52 -155.66 -0.08 1.82 16 3 C -0.16 -3.89 7.77 37.15 0.29 -3.60 16 4 C -0.50 -12.68 8.01 -34.44 -0.28 -12.96 16 5 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 6 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.88 -23.39 9.35 55.43 0.52 -22.87 16 8 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 9 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 C -0.58 -10.41 5.12 37.16 0.19 -10.22 16 13 S 2.59 44.71 4.46 -107.50 -0.48 44.23 16 14 O -0.95 -18.53 14.44 -57.54 -0.83 -19.36 16 15 O -0.95 -18.81 14.42 -57.54 -0.83 -19.64 16 16 N -1.01 -13.02 3.27 -112.82 -0.37 -13.39 16 17 C 0.08 0.85 6.50 -3.53 -0.02 0.83 16 18 C 0.05 0.41 6.98 37.31 0.26 0.67 16 19 O -0.36 -3.73 10.27 -35.23 -0.36 -4.09 16 20 C 0.03 0.30 2.77 -26.36 -0.07 0.23 16 21 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 22 C 0.47 4.98 2.85 37.16 0.11 5.09 16 23 F -0.17 -1.94 16.63 2.25 0.04 -1.90 16 24 F -0.17 -1.84 16.98 2.25 0.04 -1.80 16 25 F -0.17 -1.94 17.26 2.25 0.04 -1.90 16 26 C 0.09 1.09 5.55 -3.32 -0.02 1.07 16 27 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 28 H 0.03 0.61 5.46 -51.93 -0.28 0.32 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.62 5.46 -51.93 -0.28 0.34 16 32 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 33 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.12 1.88 8.14 -51.92 -0.42 1.46 16 35 H 0.12 1.87 8.14 -51.93 -0.42 1.45 16 36 H 0.11 1.06 7.23 -51.93 -0.38 0.69 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.00 7.63 -51.93 -0.40 0.60 16 41 H 0.11 1.31 7.13 -51.93 -0.37 0.94 16 LS Contribution 343.18 15.07 5.17 5.17 Total: -1.00 -30.64 343.18 -6.78 -37.41 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.26 Total: 2.13 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 0.57 Total: -19.02 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.15 Total: -36.27 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -2.02 Total: -43.08 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 0.11 Total: -5.60 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 44.71 SS G_CDS: -0.48 Total: 44.23 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.64 -6.78 -37.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590747991.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -222.643 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -253.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -260.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds