Wall clock time and date at job start Wed Apr 1 2020 03:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47173 * 2 1 4 4 C 1.50699 * 109.47203 * 120.00513 * 2 1 3 5 5 H 1.08002 * 120.00516 * 119.99366 * 4 2 1 6 6 C 1.37884 * 119.99783 * 299.99666 * 4 2 1 7 7 N 1.31514 * 119.99707 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99956 * 180.27458 * 6 4 2 9 9 H 1.48497 * 109.47172 * 179.72730 * 8 6 4 10 10 H 1.48506 * 109.47132 * 299.72429 * 8 6 4 11 11 H 1.48501 * 109.47173 * 59.72550 * 8 6 4 12 12 C 1.53004 * 109.46866 * 240.00064 * 2 1 3 13 13 S 1.81403 * 109.47190 * 60.00356 * 12 2 1 14 14 O 1.42095 * 110.53913 * 291.62379 * 13 12 2 15 15 O 1.42099 * 110.54065 * 68.37311 * 13 12 2 16 16 N 1.65593 * 104.44946 * 179.97438 * 13 12 2 17 17 C 1.47159 * 120.98205 * 89.99810 * 16 13 12 18 18 C 1.53293 * 108.38607 * 230.51126 * 17 16 13 19 19 O 1.42964 * 109.22219 * 307.69628 * 18 17 16 20 20 C 1.42965 * 114.16453 * 62.58084 * 19 18 17 21 21 H 1.09004 * 109.51464 * 57.34389 * 20 19 18 22 22 C 1.53002 * 109.51403 * 177.44015 * 20 19 18 23 23 F 1.39903 * 109.46775 * 60.00400 * 22 20 19 24 24 F 1.39901 * 109.47263 * 179.97438 * 22 20 19 25 25 F 1.39900 * 109.47241 * 300.00414 * 22 20 19 26 26 C 1.47152 * 120.98266 * 269.71636 * 16 13 12 27 27 H 1.08994 * 109.46844 * 300.00095 * 1 2 3 28 28 H 1.08998 * 109.46846 * 59.99410 * 1 2 3 29 29 H 1.08997 * 109.47361 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47093 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47717 * 300.00057 * 3 2 1 32 32 H 1.09001 * 109.47144 * 60.00513 * 3 2 1 33 33 H 0.97005 * 119.99656 * 179.97438 * 7 6 4 34 34 H 1.09006 * 109.47053 * 179.97438 * 12 2 1 35 35 H 1.08997 * 109.47419 * 300.00318 * 12 2 1 36 36 H 1.09000 * 109.67866 * 350.23819 * 17 16 13 37 37 H 1.09007 * 109.67599 * 110.75327 * 17 16 13 38 38 H 1.09000 * 109.51013 * 67.61793 * 18 17 16 39 39 H 1.08996 * 109.51053 * 187.77580 * 18 17 16 40 40 H 1.09001 * 109.68051 * 249.21100 * 26 16 13 41 41 H 1.08997 * 109.67935 * 9.76687 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3283 -1.1156 4.0079 9 1 1.8377 -0.4126 5.2204 10 1 1.8338 -2.5159 4.0136 11 1 3.8133 -1.1151 4.0021 12 6 2.0400 -0.7213 -1.2493 13 16 1.4353 0.1340 -2.7304 14 8 0.0280 -0.0182 -2.8544 15 8 2.0480 1.4101 -2.8543 16 7 2.0541 -0.7399 -3.9936 17 6 1.3072 -1.8684 -4.5718 18 6 2.2414 -3.0818 -4.6408 19 8 3.4481 -2.7093 -5.3108 20 6 4.2005 -1.6951 -4.6405 21 1 4.4411 -2.0276 -3.6307 22 6 5.4943 -1.4250 -5.4114 23 9 5.1845 -0.9960 -6.7065 24 9 6.2295 -0.4321 -4.7552 25 9 6.2514 -2.5996 -5.4778 26 6 3.3642 -0.4071 -4.5752 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 0.7082 1.1607 3.4845 34 1 3.1300 -0.7209 -1.2496 35 1 1.6766 -1.7489 -1.2494 36 1 0.4485 -2.1014 -3.9421 37 1 0.9675 -1.6085 -5.5745 38 1 2.4749 -3.4193 -3.6310 39 1 1.7531 -3.8863 -5.1907 40 1 3.2285 -0.0029 -5.5784 41 1 3.8683 0.3279 -3.9477 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590747991.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:53 Heat of formation + Delta-G solvation = -280.428767 kcal Electronic energy + Delta-G solvation = -30757.862861 eV Core-core repulsion = 25963.795526 eV Total energy + Delta-G solvation = -4794.067335 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.105 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.18034 -48.70649 -48.65055 -40.54311 -38.26855 -38.14509 -36.99939 -36.05152 -33.63104 -33.36316 -29.16243 -28.37600 -27.69613 -27.24705 -26.83968 -24.37802 -22.60068 -21.25730 -20.26074 -19.66509 -19.40206 -19.19253 -18.62125 -17.89625 -17.52688 -17.09966 -17.01762 -16.73452 -16.35370 -15.90688 -15.58923 -15.45448 -15.25245 -15.10486 -15.04224 -14.95420 -14.79247 -14.78594 -14.70022 -14.42933 -13.91810 -13.62881 -13.59251 -13.10144 -12.96152 -12.87559 -12.81395 -12.79906 -12.60082 -12.50159 -12.19555 -12.18245 -12.02053 -11.78139 -11.66556 -11.56890 -11.25875 -10.61895 -10.40608 -10.02334 -8.02702 -6.21287 -0.77878 1.33419 1.46129 1.47372 1.53690 1.58275 2.25381 2.44636 2.67185 2.79209 2.85566 3.14549 3.21136 3.32302 3.39361 3.60482 3.83200 3.98854 4.04140 4.08739 4.15379 4.30036 4.51365 4.57874 4.59640 4.82522 4.85774 4.88168 4.90065 4.98156 5.06549 5.31043 5.38489 5.51334 5.65182 5.69847 5.97711 6.11336 6.33777 6.83524 7.47381 8.96815 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.014945 B = 0.003761 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.094168 B = 7443.342072 C = 8114.355613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.069 3.931 3 C -0.161 4.161 4 C -0.516 4.516 5 H 0.065 0.935 6 C 0.019 3.981 7 N -0.908 5.908 8 Si 0.952 3.048 9 H -0.290 1.290 10 H -0.271 1.271 11 H -0.273 1.273 12 C -0.584 4.584 13 S 2.606 3.394 14 O -0.979 6.979 15 O -0.984 6.984 16 N -1.002 6.002 17 C 0.073 3.927 18 C 0.048 3.952 19 O -0.368 6.368 20 C 0.033 3.967 21 H 0.130 0.870 22 C 0.470 3.530 23 F -0.178 7.178 24 F -0.173 7.173 25 F -0.177 7.177 26 C 0.087 3.913 27 H 0.069 0.931 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.041 0.959 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.261 0.739 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.148 0.852 40 H 0.099 0.901 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.936 -8.735 -15.948 19.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.067 3.933 3 C -0.219 4.219 4 C -0.555 4.555 5 H 0.084 0.916 6 C -0.181 4.181 7 N -0.546 5.546 8 Si 0.778 3.222 9 H -0.216 1.216 10 H -0.196 1.196 11 H -0.198 1.198 12 C -0.717 4.717 13 S 2.706 3.294 14 O -0.969 6.969 15 O -0.974 6.974 16 N -0.840 5.840 17 C -0.052 4.052 18 C -0.028 4.028 19 O -0.286 6.286 20 C -0.028 4.028 21 H 0.147 0.853 22 C 0.415 3.585 23 F -0.159 7.159 24 F -0.154 7.154 25 F -0.158 7.158 26 C -0.040 4.040 27 H 0.088 0.912 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.130 0.870 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.165 0.835 40 H 0.117 0.883 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.363 -7.907 -16.136 18.752 hybrid contribution 0.622 -0.340 1.420 1.587 sum 5.984 -8.247 -14.715 17.899 Atomic orbital electron populations 1.22202 0.97643 1.00625 1.01260 1.17925 0.92412 0.92066 0.90868 1.22220 0.99912 0.98478 1.01285 1.21250 1.31677 1.12340 0.90221 0.91646 1.25655 0.95182 0.95603 1.01632 1.69937 1.37154 1.23665 1.23877 0.85704 0.78730 0.78777 0.78950 1.21589 1.19608 1.19785 1.30514 1.12625 1.13591 1.14929 1.05197 0.74077 0.74716 0.75456 1.93512 1.30628 1.86714 1.86031 1.93510 1.78375 1.39477 1.86037 1.57855 1.28849 1.47930 1.49326 1.22465 0.95350 0.85607 1.01733 1.23416 0.83072 0.96347 1.00011 1.87954 1.36551 1.54572 1.49548 1.23644 0.88866 0.92327 0.98008 0.85275 1.20035 0.85978 0.74302 0.78147 1.93200 1.92890 1.89900 1.39937 1.93240 1.79007 1.62268 1.80903 1.93211 1.78261 1.48039 1.96283 1.22182 0.83223 0.95727 1.02821 0.91214 0.95005 0.93808 0.93992 0.94979 0.91178 0.92975 0.84367 0.83938 0.87049 0.88979 0.90291 0.83460 0.88330 0.86909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.50 7.78 71.98 0.56 -6.94 16 2 C 0.07 3.15 0.52 -52.93 -0.03 3.12 16 3 C -0.16 -7.66 7.77 71.98 0.56 -7.10 16 4 C -0.52 -25.44 8.01 25.60 0.21 -25.24 16 5 H 0.07 3.06 7.74 -2.91 -0.02 3.03 16 6 C 0.02 0.96 5.15 84.66 0.44 1.40 16 7 N -0.91 -48.90 9.35 21.45 0.20 -48.70 16 8 Si 0.95 40.70 29.54 68.60 2.03 42.72 16 9 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 12 C -0.58 -19.76 5.12 71.98 0.37 -19.39 16 13 S 2.61 86.43 4.46 -56.49 -0.25 86.18 16 14 O -0.98 -37.00 14.44 -127.65 -1.84 -38.84 16 15 O -0.98 -38.10 14.42 -127.65 -1.84 -39.94 16 16 N -1.00 -23.58 3.27 -510.84 -1.67 -25.25 16 17 C 0.07 1.28 6.50 86.35 0.56 1.84 16 18 C 0.05 0.63 6.98 72.08 0.50 1.13 16 19 O -0.37 -6.45 10.27 -148.98 -1.53 -7.98 16 20 C 0.03 0.59 2.77 30.83 0.09 0.68 16 21 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 22 C 0.47 9.06 2.85 71.98 0.21 9.27 16 23 F -0.18 -3.68 16.63 44.97 0.75 -2.94 16 24 F -0.17 -3.45 16.98 44.97 0.76 -2.69 16 25 F -0.18 -3.58 17.26 44.97 0.78 -2.80 16 26 C 0.09 1.82 5.55 86.49 0.48 2.30 16 27 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 28 H 0.03 1.42 5.46 -2.39 -0.01 1.41 16 29 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.03 1.45 5.46 -2.39 -0.01 1.44 16 32 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 33 H 0.26 13.57 8.31 -92.70 -0.77 12.80 16 34 H 0.14 4.06 8.14 -2.39 -0.02 4.04 16 35 H 0.14 4.08 8.14 -2.39 -0.02 4.06 16 36 H 0.11 1.90 7.23 -2.39 -0.02 1.88 16 37 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.15 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.10 1.95 7.63 -2.39 -0.02 1.93 16 41 H 0.11 2.41 7.13 -2.39 -0.02 2.39 16 Total: -1.00 -65.24 343.18 2.38 -62.86 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 1.06 Total: 16.31 kcal Atomic # 6 Polarization: -42.86 SS G_CDS: 3.94 Total: -38.93 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -1.47 Total: -73.95 kcal Atomic # 8 Polarization: -81.54 SS G_CDS: -5.21 Total: -86.76 kcal Atomic # 9 Polarization: -10.72 SS G_CDS: 2.29 Total: -8.43 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.72 kcal Atomic # 16 Polarization: 86.43 SS G_CDS: -0.25 Total: 86.18 kcal Total: -65.24 2.38 -62.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590747991.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -217.573 kcal (2) G-P(sol) polarization free energy of solvation -65.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -282.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -280.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds