Wall clock time and date at job start Wed Apr 1 2020 04:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.40432 * 120.35362 * 157.79588 * 3 2 1 5 5 N 1.30852 * 121.62058 * 179.97438 * 4 3 2 6 6 C 1.34056 * 121.99134 * 359.97438 * 5 4 3 7 7 C 1.40588 * 120.74254 * 180.02562 * 6 5 4 8 8 F 1.35105 * 120.08536 * 359.95633 * 7 6 5 9 9 C 1.36445 * 119.83130 * 179.16716 * 7 6 5 10 10 C 1.39114 * 121.03522 * 0.81427 * 9 7 6 11 11 C 1.36560 * 120.76366 * 359.47127 * 10 9 7 12 12 F 1.35102 * 120.18553 * 179.97438 * 11 10 9 13 13 C 1.40423 * 119.62599 * 359.97438 * 11 10 9 14 14 C 1.40280 * 120.35902 * 337.77321 * 3 2 1 15 15 N 1.37924 * 121.11095 * 359.97438 * 14 3 2 16 16 C 1.48528 * 110.99920 * 57.40056 * 15 14 3 17 17 C 1.55198 * 103.23435 * 200.25129 * 16 15 14 18 18 C 1.54593 * 102.80282 * 37.43283 * 17 16 15 19 19 O 1.42905 * 110.30753 * 96.97785 * 18 17 16 20 20 C 1.50696 * 110.30941 * 219.04976 * 18 17 16 21 21 H 1.07995 * 119.99971 * 117.21162 * 20 18 17 22 22 C 1.37880 * 120.00044 * 297.20656 * 20 18 17 23 23 N 1.31515 * 119.99748 * 0.02562 * 22 20 18 24 24 Si 1.86797 * 120.00164 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47020 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47190 * 120.00236 * 24 22 20 27 27 H 1.48496 * 109.47099 * 240.00436 * 24 22 20 28 28 C 1.47903 * 111.00297 * 299.99879 * 15 14 3 29 29 H 1.07998 * 119.19224 * 359.97387 * 4 3 2 30 30 H 1.08001 * 119.48258 * 180.24706 * 9 7 6 31 31 H 1.08000 * 119.62063 * 179.44884 * 10 9 7 32 32 H 1.09002 * 110.66785 * 318.70865 * 16 15 14 33 33 H 1.09007 * 110.67221 * 81.67621 * 16 15 14 34 34 H 1.08997 * 110.76297 * 279.12094 * 17 16 15 35 35 H 1.09006 * 110.80121 * 155.75861 * 17 16 15 36 36 H 0.96696 * 114.00036 * 62.79254 * 19 18 17 37 37 H 0.97001 * 119.99864 * 179.97438 * 23 22 20 38 38 H 1.09005 * 109.91469 * 26.49254 * 28 15 14 39 39 H 1.09000 * 110.08204 * 265.29307 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2771 1.1229 -0.4580 5 7 4.5853 1.1505 -0.4684 6 6 5.3209 0.1133 -0.0438 7 6 6.7254 0.1715 -0.0662 8 9 7.3502 1.2803 -0.5196 9 6 7.4559 -0.8884 0.3863 10 6 6.8333 -2.0399 0.8570 11 6 5.4713 -2.1346 0.8882 12 9 4.8788 -3.2586 1.3472 13 6 4.6902 -1.0570 0.4404 14 6 3.2775 -1.1195 0.4579 15 7 2.6192 -2.2413 0.9167 16 6 1.7084 -2.7863 -0.1223 17 6 0.7125 -3.6506 0.6961 18 6 0.5173 -2.8201 1.9853 19 8 -0.6679 -2.0273 1.8898 20 6 0.4432 -3.7276 3.1860 21 1 1.1919 -3.6596 3.9613 22 6 -0.5806 -4.6448 3.2949 23 7 -1.4921 -4.7279 2.3505 24 14 -0.6729 -5.7693 4.7836 25 1 0.4635 -5.4789 5.6944 26 1 -1.9533 -5.5387 5.4995 27 1 -0.6018 -7.1847 4.3399 28 6 1.7598 -1.9149 2.0754 29 1 2.7293 1.9844 -0.8102 30 1 8.5346 -0.8361 0.3703 31 1 7.4339 -2.8687 1.2015 32 1 1.1857 -1.9801 -0.6369 33 1 2.2602 -3.4011 -0.8336 34 1 1.1447 -4.6244 0.9264 35 1 -0.2316 -3.7628 0.1629 36 1 -1.4812 -2.5440 1.8090 37 1 -2.2121 -5.3734 2.4268 38 1 1.4604 -0.8677 2.0322 39 1 2.2947 -2.1099 3.0048 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591974800.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:31 Heat of formation + Delta-G solvation = -17.704851 kcal Electronic energy + Delta-G solvation = -30607.588487 eV Core-core repulsion = 26152.531741 eV Total energy + Delta-G solvation = -4455.056746 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.103 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.01491 -48.77818 -41.33408 -39.09523 -37.25162 -36.06362 -35.34738 -32.46272 -32.14649 -31.34113 -29.83177 -28.73766 -28.32152 -25.42821 -24.73304 -24.10975 -22.02092 -20.97551 -20.20938 -19.67348 -18.35752 -18.10081 -17.26806 -17.15163 -16.48395 -16.15932 -15.99093 -15.37070 -15.29302 -14.92746 -14.68217 -14.43981 -14.35071 -14.20653 -13.93760 -13.52744 -13.32237 -13.05017 -12.89413 -12.61971 -12.51702 -12.43458 -12.10259 -11.85449 -11.57708 -11.51769 -11.35255 -11.11786 -10.83290 -10.61857 -10.47614 -10.20653 -10.10448 -9.95884 -9.32945 -9.26260 -8.66060 -8.42796 -8.18298 -8.13023 -6.26772 -4.33610 -0.19562 0.17486 1.32084 2.24441 2.87623 3.19038 3.23409 3.28110 3.32229 3.47025 3.67334 3.75683 3.81494 3.96699 4.15877 4.27475 4.31455 4.52107 4.62305 4.72252 4.99354 5.02240 5.27992 5.38082 5.45524 5.60527 5.64882 5.74901 5.78869 5.81116 5.95112 5.97877 6.09439 6.22010 6.45294 6.63609 6.77426 6.93426 7.27755 7.39161 7.40916 7.42300 7.72043 7.74775 8.03898 8.67612 9.33670 9.44888 10.80725 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.016297 B = 0.003914 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.708462 B = 7152.942566 C = 8410.273553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.347 5.347 2 C 0.222 3.778 3 C -0.119 4.119 4 C 0.198 3.802 5 N -0.475 5.475 6 C 0.145 3.855 7 C 0.098 3.902 8 F -0.121 7.121 9 C -0.095 4.095 10 C -0.155 4.155 11 C 0.163 3.837 12 F -0.094 7.094 13 C -0.115 4.115 14 C 0.236 3.764 15 N -0.486 5.486 16 C 0.030 3.970 17 C -0.113 4.113 18 C 0.249 3.751 19 O -0.582 6.582 20 C -0.530 4.530 21 H 0.063 0.937 22 C 0.071 3.929 23 N -0.896 5.896 24 Si 0.901 3.099 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.283 1.283 28 C 0.058 3.942 29 H 0.174 0.826 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.384 0.616 37 H 0.267 0.733 38 H 0.046 0.954 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.763 6.506 -6.152 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.022 5.022 2 C -0.094 4.094 3 C -0.128 4.128 4 C 0.023 3.977 5 N -0.182 5.182 6 C 0.023 3.977 7 C 0.078 3.922 8 F -0.099 7.099 9 C -0.116 4.116 10 C -0.174 4.174 11 C 0.141 3.859 12 F -0.072 7.072 13 C -0.119 4.119 14 C 0.128 3.872 15 N -0.208 5.208 16 C -0.095 4.095 17 C -0.152 4.152 18 C 0.209 3.791 19 O -0.392 6.392 20 C -0.568 4.568 21 H 0.081 0.919 22 C -0.131 4.131 23 N -0.536 5.536 24 Si 0.729 3.271 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.209 1.209 28 C -0.067 4.067 29 H 0.191 0.809 30 H 0.170 0.830 31 H 0.170 0.830 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.235 0.765 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.179 7.210 -6.282 17.940 hybrid contribution -1.048 -1.347 0.820 1.893 sum 14.131 5.863 -5.462 16.245 Atomic orbital electron populations 1.81374 1.10825 1.04736 1.05226 1.24806 0.91941 0.96234 0.96406 1.17892 0.87280 0.98128 1.09458 1.22933 0.89128 0.95391 0.90230 1.68100 1.06909 1.26270 1.16950 1.18583 0.92914 0.89540 0.96692 1.16900 0.87701 0.85201 1.02433 1.91534 1.81606 1.50279 1.86466 1.20687 1.01396 0.91521 0.97997 1.20704 0.92687 0.99823 1.04208 1.17240 0.90244 0.83015 0.95360 1.91704 1.83991 1.46873 1.84639 1.18501 0.92476 0.95435 1.05467 1.19582 0.91793 0.88936 0.86885 1.62172 1.28723 1.22266 1.07621 1.23726 0.93621 0.98531 0.93580 1.23067 0.96642 0.98661 0.96804 1.19227 0.81581 0.85874 0.92415 1.86147 1.17763 1.38632 1.96610 1.21661 1.11094 1.18094 1.05997 0.91872 1.24988 0.95123 0.96660 0.96373 1.69662 1.14175 1.36797 1.33000 0.86391 0.78087 0.80161 0.82505 1.19632 1.20904 1.20865 1.23182 0.93343 0.98795 0.91331 0.80928 0.83041 0.83040 0.93459 0.90600 0.90770 0.90944 0.76532 0.92315 0.93580 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.35 -6.71 17.29 41.83 0.72 -5.99 16 2 C 0.22 3.77 9.82 -22.47 -0.22 3.55 16 3 C -0.12 -1.74 5.26 -106.38 -0.56 -2.30 16 4 C 0.20 2.39 10.87 -17.14 -0.19 2.20 16 5 N -0.47 -6.20 10.16 -10.71 -0.11 -6.31 16 6 C 0.15 1.88 6.61 -84.77 -0.56 1.32 16 7 C 0.10 1.09 7.30 -39.34 -0.29 0.80 16 8 F -0.12 -1.41 17.10 2.25 0.04 -1.37 16 9 C -0.10 -0.80 9.91 -39.90 -0.40 -1.20 16 10 C -0.16 -1.42 9.94 -39.86 -0.40 -1.82 16 11 C 0.16 2.06 7.24 -39.37 -0.29 1.78 16 12 F -0.09 -1.43 15.39 2.25 0.03 -1.40 16 13 C -0.11 -1.58 5.76 -106.62 -0.61 -2.20 16 14 C 0.24 3.70 4.86 -83.15 -0.40 3.30 16 15 N -0.49 -8.81 3.38 -166.30 -0.56 -9.37 16 16 C 0.03 0.56 6.16 -1.76 -0.01 0.55 16 17 C -0.11 -2.50 5.42 -24.73 -0.13 -2.64 16 18 C 0.25 5.90 0.99 -90.42 -0.09 5.81 16 19 O -0.58 -14.64 11.87 -35.23 -0.42 -15.05 16 20 C -0.53 -13.77 8.11 -34.44 -0.28 -14.05 16 21 H 0.06 1.65 7.34 -52.49 -0.39 1.26 16 22 C 0.07 1.83 5.26 -17.82 -0.09 1.73 16 23 N -0.90 -23.42 10.87 55.43 0.60 -22.82 16 24 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 28 C 0.06 1.21 5.49 -2.75 -0.02 1.19 16 29 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.05 0.89 4.89 -51.93 -0.25 0.63 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.07 1.74 7.86 -51.93 -0.41 1.33 16 35 H 0.07 1.70 8.01 -51.93 -0.42 1.29 16 36 H 0.38 10.09 7.19 45.56 0.33 10.42 16 37 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 38 H 0.05 0.97 5.36 -51.93 -0.28 0.69 16 39 H 0.09 1.90 7.39 -51.93 -0.38 1.52 16 LS Contribution 334.57 15.07 5.04 5.04 Total: -1.00 -28.38 334.57 -6.82 -35.20 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -2.62 Total: 8.64 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -4.53 Total: -1.96 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.66 Total: -44.49 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.42 Total: -15.05 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.07 Total: -2.76 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.38 -6.82 -35.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591974800.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.500 kcal (2) G-P(sol) polarization free energy of solvation -28.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds