Wall clock time and date at job start Wed Apr 1 2020 04:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.40432 * 120.35362 * 157.79588 * 3 2 1 5 5 N 1.30852 * 121.62058 * 179.97438 * 4 3 2 6 6 C 1.34056 * 121.99134 * 359.97438 * 5 4 3 7 7 C 1.40588 * 120.74254 * 180.02562 * 6 5 4 8 8 F 1.35105 * 120.08536 * 359.95633 * 7 6 5 9 9 C 1.36445 * 119.83130 * 179.16716 * 7 6 5 10 10 C 1.39114 * 121.03522 * 0.81427 * 9 7 6 11 11 C 1.36560 * 120.76366 * 359.47127 * 10 9 7 12 12 F 1.35102 * 120.18553 * 179.97438 * 11 10 9 13 13 C 1.40423 * 119.62599 * 359.97438 * 11 10 9 14 14 C 1.40280 * 120.35902 * 337.77321 * 3 2 1 15 15 N 1.37924 * 121.11095 * 359.97438 * 14 3 2 16 16 C 1.48528 * 110.99920 * 57.40056 * 15 14 3 17 17 C 1.55198 * 103.23435 * 200.25129 * 16 15 14 18 18 C 1.54593 * 102.80282 * 37.43283 * 17 16 15 19 19 O 1.42905 * 110.30753 * 96.97785 * 18 17 16 20 20 C 1.50696 * 110.30941 * 219.04976 * 18 17 16 21 21 H 1.07995 * 119.99971 * 117.21162 * 20 18 17 22 22 C 1.37880 * 120.00044 * 297.20656 * 20 18 17 23 23 N 1.31515 * 119.99748 * 0.02562 * 22 20 18 24 24 Si 1.86797 * 120.00164 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47020 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47190 * 120.00236 * 24 22 20 27 27 H 1.48496 * 109.47099 * 240.00436 * 24 22 20 28 28 C 1.47903 * 111.00297 * 299.99879 * 15 14 3 29 29 H 1.07998 * 119.19224 * 359.97387 * 4 3 2 30 30 H 1.08001 * 119.48258 * 180.24706 * 9 7 6 31 31 H 1.08000 * 119.62063 * 179.44884 * 10 9 7 32 32 H 1.09002 * 110.66785 * 318.70865 * 16 15 14 33 33 H 1.09007 * 110.67221 * 81.67621 * 16 15 14 34 34 H 1.08997 * 110.76297 * 279.12094 * 17 16 15 35 35 H 1.09006 * 110.80121 * 155.75861 * 17 16 15 36 36 H 0.96696 * 114.00036 * 62.79254 * 19 18 17 37 37 H 0.97001 * 119.99864 * 179.97438 * 23 22 20 38 38 H 1.09005 * 109.91469 * 26.49254 * 28 15 14 39 39 H 1.09000 * 110.08204 * 265.29307 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2771 1.1229 -0.4580 5 7 4.5853 1.1505 -0.4684 6 6 5.3209 0.1133 -0.0438 7 6 6.7254 0.1715 -0.0662 8 9 7.3502 1.2803 -0.5196 9 6 7.4559 -0.8884 0.3863 10 6 6.8333 -2.0399 0.8570 11 6 5.4713 -2.1346 0.8882 12 9 4.8788 -3.2586 1.3472 13 6 4.6902 -1.0570 0.4404 14 6 3.2775 -1.1195 0.4579 15 7 2.6192 -2.2413 0.9167 16 6 1.7084 -2.7863 -0.1223 17 6 0.7125 -3.6506 0.6961 18 6 0.5173 -2.8201 1.9853 19 8 -0.6679 -2.0273 1.8898 20 6 0.4432 -3.7276 3.1860 21 1 1.1919 -3.6596 3.9613 22 6 -0.5806 -4.6448 3.2949 23 7 -1.4921 -4.7279 2.3505 24 14 -0.6729 -5.7693 4.7836 25 1 0.4635 -5.4789 5.6944 26 1 -1.9533 -5.5387 5.4995 27 1 -0.6018 -7.1847 4.3399 28 6 1.7598 -1.9149 2.0754 29 1 2.7293 1.9844 -0.8102 30 1 8.5346 -0.8361 0.3703 31 1 7.4339 -2.8687 1.2015 32 1 1.1857 -1.9801 -0.6369 33 1 2.2602 -3.4011 -0.8336 34 1 1.1447 -4.6244 0.9264 35 1 -0.2316 -3.7628 0.1629 36 1 -1.4812 -2.5440 1.8090 37 1 -2.2121 -5.3734 2.4268 38 1 1.4604 -0.8677 2.0322 39 1 2.2947 -2.1099 3.0048 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591974800.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:30 Heat of formation + Delta-G solvation = -35.688461 kcal Electronic energy + Delta-G solvation = -30608.368315 eV Core-core repulsion = 26152.531741 eV Total energy + Delta-G solvation = -4455.836574 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.103 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.87682 -49.79242 -42.47941 -40.45246 -38.38645 -37.38553 -36.97354 -34.15929 -33.83770 -32.31896 -30.95250 -30.14846 -29.99620 -26.97614 -25.99370 -25.22088 -23.30858 -22.23658 -21.53871 -21.25475 -19.46659 -19.26986 -18.93859 -18.25339 -17.54381 -17.15036 -17.09139 -16.91185 -16.58996 -16.28277 -16.11578 -15.78413 -15.50664 -15.48044 -15.19778 -14.86556 -14.46664 -14.35347 -14.11584 -14.03427 -13.93110 -13.79252 -13.55526 -13.52552 -13.23841 -12.97769 -12.62071 -12.48005 -12.41288 -12.36342 -12.28195 -12.04301 -11.33943 -11.14807 -11.05528 -10.64658 -10.21675 -10.13985 -9.87551 -9.09440 -8.24591 -6.38671 -1.24711 -0.74838 0.31993 1.31451 1.37615 1.41403 1.51678 1.54999 2.11044 2.28142 2.37806 2.50854 2.66319 2.81255 3.01051 3.05310 3.17624 3.36147 3.56770 3.61218 3.68220 3.86008 4.02741 4.07398 4.10300 4.18553 4.34088 4.46916 4.55493 4.62168 4.84372 4.87799 4.88443 4.95511 5.02410 5.06410 5.17673 5.48930 5.54794 5.61479 5.73394 5.92069 6.08604 6.32270 6.49672 6.65007 7.31373 7.39962 8.81250 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.016297 B = 0.003914 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.708462 B = 7152.942566 C = 8410.273553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C 0.242 3.758 3 C -0.125 4.125 4 C 0.208 3.792 5 N -0.478 5.478 6 C 0.135 3.865 7 C 0.089 3.911 8 F -0.123 7.123 9 C -0.067 4.067 10 C -0.124 4.124 11 C 0.131 3.869 12 F -0.116 7.116 13 C -0.119 4.119 14 C 0.213 3.787 15 N -0.479 5.479 16 C 0.041 3.959 17 C -0.103 4.103 18 C 0.238 3.762 19 O -0.587 6.587 20 C -0.553 4.553 21 H 0.055 0.945 22 C 0.032 3.968 23 N -0.913 5.913 24 Si 0.959 3.041 25 H -0.270 1.270 26 H -0.282 1.282 27 H -0.278 1.278 28 C 0.069 3.931 29 H 0.205 0.795 30 H 0.196 0.804 31 H 0.187 0.813 32 H 0.046 0.954 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.374 0.626 37 H 0.268 0.732 38 H 0.041 0.959 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.201 6.800 -6.345 21.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.072 5.072 2 C -0.073 4.073 3 C -0.133 4.133 4 C 0.032 3.968 5 N -0.185 5.185 6 C 0.013 3.987 7 C 0.068 3.932 8 F -0.102 7.102 9 C -0.088 4.088 10 C -0.142 4.142 11 C 0.110 3.890 12 F -0.094 7.094 13 C -0.123 4.123 14 C 0.106 3.894 15 N -0.200 5.200 16 C -0.085 4.085 17 C -0.142 4.142 18 C 0.198 3.802 19 O -0.395 6.395 20 C -0.591 4.591 21 H 0.073 0.927 22 C -0.169 4.169 23 N -0.553 5.553 24 Si 0.785 3.215 25 H -0.195 1.195 26 H -0.208 1.208 27 H -0.203 1.203 28 C -0.056 4.056 29 H 0.222 0.778 30 H 0.213 0.787 31 H 0.204 0.796 32 H 0.064 0.936 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.224 0.776 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 18.647 7.519 -6.485 21.126 hybrid contribution -1.920 -1.403 0.865 2.530 sum 16.727 6.116 -5.620 18.676 Atomic orbital electron populations 1.81382 1.12287 1.06359 1.07142 1.25161 0.92375 0.94818 0.94953 1.17961 0.85906 0.99033 1.10411 1.23301 0.88886 0.95271 0.89306 1.68182 1.07093 1.26400 1.16871 1.18846 0.93956 0.89150 0.96783 1.17098 0.87059 0.85953 1.03056 1.91535 1.81418 1.50621 1.86603 1.21156 1.03320 0.89579 0.94698 1.21130 0.91263 1.00696 1.01130 1.17559 0.91583 0.82505 0.97345 1.91654 1.84587 1.47857 1.85276 1.18508 0.91460 0.96354 1.05947 1.19623 0.92745 0.88494 0.88557 1.62026 1.27512 1.23872 1.06639 1.23590 0.93211 0.98158 0.93502 1.22779 0.96533 0.98213 0.96643 1.19401 0.81946 0.86471 0.92420 1.86157 1.17854 1.38793 1.96671 1.21914 1.11328 1.19116 1.06769 0.92705 1.25642 0.94819 0.97765 0.98657 1.69751 1.14352 1.37093 1.34079 0.85493 0.77861 0.78553 0.79610 1.19483 1.20789 1.20335 1.22908 0.92514 0.97712 0.92508 0.77803 0.78685 0.79619 0.93599 0.88465 0.92534 0.93013 0.77623 0.92212 0.94114 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -15.82 17.29 19.00 0.33 -15.50 16 2 C 0.24 8.36 9.82 88.33 0.87 9.22 16 3 C -0.12 -3.60 5.26 -21.00 -0.11 -3.71 16 4 C 0.21 4.69 10.87 85.37 0.93 5.62 16 5 N -0.48 -11.53 10.16 -187.81 -1.91 -13.44 16 6 C 0.13 3.19 6.61 40.18 0.27 3.45 16 7 C 0.09 1.65 7.30 22.42 0.16 1.81 16 8 F -0.12 -2.46 17.10 44.97 0.77 -1.69 16 9 C -0.07 -0.79 9.91 22.06 0.22 -0.57 16 10 C -0.12 -1.72 9.94 22.09 0.22 -1.50 16 11 C 0.13 3.05 7.24 22.41 0.16 3.21 16 12 F -0.12 -3.40 15.39 44.97 0.69 -2.71 16 13 C -0.12 -3.11 5.76 -21.16 -0.12 -3.23 16 14 C 0.21 6.61 4.86 39.46 0.19 6.80 16 15 N -0.48 -17.58 3.38 -680.05 -2.30 -19.88 16 16 C 0.04 1.54 6.16 86.74 0.53 2.07 16 17 C -0.10 -4.74 5.42 31.89 0.17 -4.57 16 18 C 0.24 11.68 0.99 -10.66 -0.01 11.67 16 19 O -0.59 -30.81 11.87 -148.98 -1.77 -32.58 16 20 C -0.55 -29.61 8.11 25.60 0.21 -29.40 16 21 H 0.05 2.95 7.34 -2.91 -0.02 2.93 16 22 C 0.03 1.66 5.26 84.66 0.45 2.11 16 23 N -0.91 -48.97 10.87 21.45 0.23 -48.73 16 24 Si 0.96 42.38 29.54 68.60 2.03 44.41 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 27 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 28 C 0.07 2.96 5.49 86.45 0.47 3.44 16 29 H 0.21 3.15 8.06 -2.91 -0.02 3.13 16 30 H 0.20 0.68 8.06 -2.91 -0.02 0.65 16 31 H 0.19 1.38 8.06 -2.91 -0.02 1.36 16 32 H 0.05 1.76 4.89 -2.39 -0.01 1.75 16 33 H 0.10 3.25 8.14 -2.38 -0.02 3.23 16 34 H 0.06 2.75 7.86 -2.39 -0.02 2.73 16 35 H 0.05 2.55 8.01 -2.38 -0.02 2.53 16 36 H 0.37 20.69 7.19 -74.06 -0.53 20.16 16 37 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 38 H 0.04 1.77 5.36 -2.38 -0.01 1.75 16 39 H 0.08 3.60 7.39 -2.39 -0.02 3.58 16 Total: -1.00 -64.23 334.57 3.31 -60.92 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.63 Total: 22.77 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 4.61 Total: 6.43 kcal Atomic # 7 Polarization: -93.90 SS G_CDS: -3.64 Total: -97.55 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -1.77 Total: -32.58 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 1.46 Total: -4.41 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -64.23 3.31 -60.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591974800.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.234 kcal (2) G-P(sol) polarization free energy of solvation -64.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds