Wall clock time and date at job start Wed Apr 1 2020 04:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40460 * 120.36297 * 29.38263 * 3 2 1 5 5 N 1.30829 * 121.62973 * 179.97438 * 4 3 2 6 6 C 1.34041 * 121.99701 * 0.02562 * 5 4 3 7 7 C 1.40676 * 120.71384 * 180.02562 * 6 5 4 8 8 F 1.35095 * 120.09673 * 0.02562 * 7 6 5 9 9 C 1.36377 * 119.80448 * 179.97438 * 7 6 5 10 10 C 1.39379 * 120.97839 * 0.04873 * 9 7 6 11 11 F 1.35102 * 119.62791 * 180.25205 * 10 9 7 12 12 C 1.36495 * 120.74259 * 359.97438 * 10 9 7 13 13 C 1.40214 * 119.67395 * 0.02562 * 12 10 9 14 14 C 1.40205 * 120.35144 * 209.42128 * 3 2 1 15 15 N 1.37969 * 121.11766 * 0.02562 * 14 3 2 16 16 C 1.47447 * 110.99739 * 299.92036 * 15 14 3 17 17 C 1.54318 * 107.23383 * 123.25829 * 16 15 14 18 18 C 1.55140 * 103.01780 * 22.27870 * 17 16 15 19 19 O 1.42900 * 110.98952 * 82.44380 * 18 17 16 20 20 C 1.50697 * 110.98882 * 206.21559 * 18 17 16 21 21 H 1.08001 * 119.99690 * 118.54849 * 20 18 17 22 22 C 1.37882 * 120.00368 * 298.55026 * 20 18 17 23 23 N 1.31516 * 119.99508 * 359.97438 * 22 20 18 24 24 Si 1.86796 * 119.99940 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46983 * 60.00313 * 24 22 20 26 26 H 1.48506 * 109.47078 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47404 * 299.99929 * 24 22 20 28 28 C 1.47842 * 111.00055 * 60.75905 * 15 14 3 29 29 H 1.08002 * 119.17918 * 359.97438 * 4 3 2 30 30 H 1.08008 * 119.50807 * 180.02562 * 9 7 6 31 31 H 1.08001 * 120.16218 * 179.97438 * 12 10 9 32 32 H 1.09008 * 109.88377 * 242.66392 * 16 15 14 33 33 H 1.09003 * 109.89000 * 3.84492 * 16 15 14 34 34 H 1.09000 * 110.70594 * 140.66157 * 17 16 15 35 35 H 1.09000 * 110.70233 * 263.72481 * 17 16 15 36 36 H 0.96704 * 114.00566 * 61.44865 * 19 18 17 37 37 H 0.97001 * 119.99234 * 179.97438 * 23 22 20 38 38 H 1.08999 * 110.37199 * 332.46664 * 28 15 14 39 39 H 1.09001 * 110.37446 * 94.80818 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2784 -1.0551 -0.5946 5 7 4.5864 -1.0795 -0.6093 6 6 5.3212 -0.1025 -0.0594 7 6 6.7266 -0.1559 -0.0910 8 9 7.3518 -1.1985 -0.6801 9 6 7.4560 0.8486 0.4737 10 6 6.8299 1.9328 1.0862 11 9 7.5792 2.9153 1.6326 12 6 5.4684 2.0160 1.1351 13 6 4.6899 0.9995 0.5636 14 6 3.2760 1.0548 0.5943 15 7 2.6165 2.1101 1.1902 16 6 1.7601 2.8145 0.2184 17 6 0.3230 2.7998 0.7804 18 6 0.5447 2.5880 2.3012 19 8 0.8463 3.8241 2.9516 20 6 -0.6521 1.9263 2.9342 21 1 -0.5480 0.9611 3.4076 22 6 -1.8801 2.5529 2.9089 23 7 -2.0066 3.7283 2.3328 24 14 -3.3637 1.7322 3.6928 25 1 -3.1023 1.5136 5.1382 26 1 -4.5548 2.6043 3.5311 27 1 -3.6138 0.4262 3.0319 28 6 1.7718 1.6426 2.3099 29 1 2.7313 -1.8668 -1.0510 30 1 8.5347 0.8029 0.4463 31 1 4.9931 2.8602 1.6124 32 1 2.1017 3.8429 0.1003 33 1 1.7881 2.2997 -0.7420 34 1 -0.1741 3.7515 0.5923 35 1 -0.2494 1.9764 0.3533 36 1 0.1424 4.4842 2.8878 37 1 -2.8706 4.1690 2.3147 38 1 1.4580 0.6121 2.1439 39 1 2.3106 1.7289 3.2535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591977019.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:55 Heat of formation + Delta-G solvation = -23.524583 kcal Electronic energy + Delta-G solvation = -30197.685824 eV Core-core repulsion = 25742.376715 eV Total energy + Delta-G solvation = -4455.309109 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.103 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.17626 -49.15348 -41.45981 -39.12125 -37.20325 -36.03392 -35.39327 -32.58226 -32.23471 -31.15585 -30.07066 -28.71476 -28.46078 -25.50278 -24.66992 -24.12244 -22.29906 -20.74947 -20.19587 -19.86525 -18.37616 -18.32106 -17.44248 -17.08986 -16.49312 -16.32393 -15.68418 -15.50241 -15.27017 -15.07525 -14.99325 -14.80283 -14.54775 -14.18456 -13.94543 -13.81751 -13.38764 -13.18827 -12.90304 -12.77114 -12.48807 -12.40261 -12.15443 -11.97243 -11.70915 -11.52311 -11.39607 -11.24387 -10.89179 -10.61577 -10.52734 -10.30214 -10.06615 -9.88698 -9.39214 -9.13140 -8.70037 -8.41466 -8.31175 -8.23428 -6.30243 -4.37985 -0.23616 0.15983 1.32868 2.17866 2.80885 3.20374 3.20713 3.24836 3.28189 3.36601 3.66481 3.75070 3.76195 3.82897 4.16930 4.26028 4.43251 4.48903 4.59790 4.68067 4.97536 5.09982 5.20269 5.30542 5.44409 5.57462 5.62186 5.65969 5.70262 5.76776 5.87584 6.01998 6.13733 6.30599 6.39535 6.51262 6.82151 6.97400 7.23853 7.31591 7.35386 7.42026 7.68924 7.70952 7.97754 8.62204 9.27600 9.36792 10.77228 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.017468 B = 0.003546 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.520876 B = 7895.370919 C = 8938.892342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.351 5.351 2 C 0.223 3.777 3 C -0.109 4.109 4 C 0.189 3.811 5 N -0.470 5.470 6 C 0.109 3.891 7 C 0.147 3.853 8 F -0.114 7.114 9 C -0.161 4.161 10 C 0.113 3.887 11 F -0.128 7.128 12 C -0.099 4.099 13 C -0.052 4.052 14 C 0.231 3.769 15 N -0.502 5.502 16 C 0.044 3.956 17 C -0.157 4.157 18 C 0.261 3.739 19 O -0.579 6.579 20 C -0.533 4.533 21 H 0.059 0.941 22 C 0.077 3.923 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 C 0.059 3.941 29 H 0.173 0.827 30 H 0.156 0.844 31 H 0.166 0.834 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.381 0.619 37 H 0.268 0.732 38 H 0.057 0.943 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.505 -4.718 -6.050 17.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.026 5.026 2 C -0.093 4.093 3 C -0.117 4.117 4 C 0.013 3.987 5 N -0.177 5.177 6 C -0.013 4.013 7 C 0.127 3.873 8 F -0.092 7.092 9 C -0.183 4.183 10 C 0.094 3.906 11 F -0.106 7.106 12 C -0.119 4.119 13 C -0.056 4.056 14 C 0.123 3.877 15 N -0.224 5.224 16 C -0.081 4.081 17 C -0.196 4.196 18 C 0.220 3.780 19 O -0.387 6.387 20 C -0.571 4.571 21 H 0.077 0.923 22 C -0.126 4.126 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.200 1.200 28 C -0.065 4.065 29 H 0.190 0.810 30 H 0.174 0.826 31 H 0.184 0.816 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.230 0.770 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 15.137 -5.197 -6.142 17.143 hybrid contribution -1.698 0.042 0.309 1.727 sum 13.439 -5.155 -5.833 15.531 Atomic orbital electron populations 1.81293 1.10995 1.04586 1.05712 1.24915 0.91984 0.96495 0.95883 1.17957 0.87015 0.99541 1.07180 1.22890 0.89032 0.94948 0.91816 1.68002 1.06996 1.25006 1.17661 1.18789 0.92736 0.91900 0.97906 1.16544 0.87617 0.86113 0.97026 1.91557 1.81711 1.54950 1.81008 1.20804 1.02264 0.93747 1.01445 1.16823 0.88652 0.86979 0.98165 1.91557 1.76180 1.59642 1.83268 1.21131 0.91283 1.00215 0.99280 1.18048 0.92139 0.95188 1.00188 1.19524 0.91767 0.88680 0.87709 1.60861 1.30908 1.20678 1.09917 1.23122 0.94286 0.98592 0.92109 1.23664 0.92096 1.04132 0.99731 1.19417 0.88771 0.82205 0.87559 1.86122 1.47184 1.26499 1.78912 1.21307 0.92936 1.05099 1.37803 0.92300 1.24920 0.98859 0.94732 0.94051 1.69699 1.25584 1.14675 1.43323 0.86538 0.81470 0.79502 0.79903 1.20003 1.21062 1.20022 1.23374 0.93498 0.97940 0.91651 0.80989 0.82648 0.81646 0.89900 0.93729 0.89840 0.90383 0.76976 0.92209 0.92480 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.35 -6.73 16.08 41.84 0.67 -6.05 16 2 C 0.22 3.67 10.04 -22.47 -0.23 3.45 16 3 C -0.11 -1.52 5.05 -106.40 -0.54 -2.05 16 4 C 0.19 2.19 10.87 -17.14 -0.19 2.00 16 5 N -0.47 -5.94 10.16 -10.70 -0.11 -6.05 16 6 C 0.11 1.37 6.61 -84.76 -0.56 0.81 16 7 C 0.15 1.63 7.30 -39.33 -0.29 1.35 16 8 F -0.11 -1.31 17.10 2.25 0.04 -1.27 16 9 C -0.16 -1.51 9.89 -39.83 -0.39 -1.91 16 10 C 0.11 1.20 7.24 -39.79 -0.29 0.91 16 11 F -0.13 -1.39 17.25 2.25 0.04 -1.35 16 12 C -0.10 -1.18 9.52 -39.47 -0.38 -1.55 16 13 C -0.05 -0.67 5.75 -106.67 -0.61 -1.29 16 14 C 0.23 3.38 4.64 -83.11 -0.39 3.00 16 15 N -0.50 -8.50 4.34 -167.19 -0.73 -9.23 16 16 C 0.04 0.77 5.98 -2.83 -0.02 0.75 16 17 C -0.16 -3.39 4.83 -24.91 -0.12 -3.51 16 18 C 0.26 6.02 0.87 -89.64 -0.08 5.94 16 19 O -0.58 -14.02 13.16 -35.23 -0.46 -14.49 16 20 C -0.53 -13.73 8.27 -34.44 -0.28 -14.02 16 21 H 0.06 1.54 7.79 -52.49 -0.41 1.13 16 22 C 0.08 2.00 5.29 -17.82 -0.09 1.91 16 23 N -0.89 -23.15 10.75 55.43 0.60 -22.55 16 24 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 28 C 0.06 1.18 5.29 -2.30 -0.01 1.17 16 29 H 0.17 1.47 8.06 -52.49 -0.42 1.04 16 30 H 0.16 1.06 8.06 -52.48 -0.42 0.63 16 31 H 0.17 2.05 7.59 -52.49 -0.40 1.65 16 32 H 0.08 1.41 8.14 -51.92 -0.42 0.99 16 33 H 0.04 0.73 6.49 -51.93 -0.34 0.39 16 34 H 0.08 1.94 7.53 -51.93 -0.39 1.55 16 35 H 0.08 1.78 4.91 -51.93 -0.25 1.52 16 36 H 0.38 9.39 7.56 45.56 0.34 9.73 16 37 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 38 H 0.06 1.13 5.52 -51.93 -0.29 0.85 16 39 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 335.23 15.07 5.05 5.05 Total: -1.00 -27.25 335.23 -6.94 -34.19 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -2.56 Total: 9.20 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -4.46 Total: -3.05 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.43 Total: -43.89 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.46 Total: -14.49 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.08 Total: -2.63 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.25 -6.94 -34.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977019.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.663 kcal (2) G-P(sol) polarization free energy of solvation -27.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds