Wall clock time and date at job start Wed Apr 1 2020 04:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40460 * 120.36297 * 29.38263 * 3 2 1 5 5 N 1.30829 * 121.62973 * 179.97438 * 4 3 2 6 6 C 1.34041 * 121.99701 * 0.02562 * 5 4 3 7 7 C 1.40676 * 120.71384 * 180.02562 * 6 5 4 8 8 F 1.35095 * 120.09673 * 0.02562 * 7 6 5 9 9 C 1.36377 * 119.80448 * 179.97438 * 7 6 5 10 10 C 1.39379 * 120.97839 * 0.04873 * 9 7 6 11 11 F 1.35102 * 119.62791 * 180.25205 * 10 9 7 12 12 C 1.36495 * 120.74259 * 359.97438 * 10 9 7 13 13 C 1.40214 * 119.67395 * 0.02562 * 12 10 9 14 14 C 1.40205 * 120.35144 * 209.42128 * 3 2 1 15 15 N 1.37969 * 121.11766 * 0.02562 * 14 3 2 16 16 C 1.47447 * 110.99739 * 299.92036 * 15 14 3 17 17 C 1.54318 * 107.23383 * 123.25829 * 16 15 14 18 18 C 1.55140 * 103.01780 * 22.27870 * 17 16 15 19 19 O 1.42900 * 110.98952 * 82.44380 * 18 17 16 20 20 C 1.50697 * 110.98882 * 206.21559 * 18 17 16 21 21 H 1.08001 * 119.99690 * 118.54849 * 20 18 17 22 22 C 1.37882 * 120.00368 * 298.55026 * 20 18 17 23 23 N 1.31516 * 119.99508 * 359.97438 * 22 20 18 24 24 Si 1.86796 * 119.99940 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46983 * 60.00313 * 24 22 20 26 26 H 1.48506 * 109.47078 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47404 * 299.99929 * 24 22 20 28 28 C 1.47842 * 111.00055 * 60.75905 * 15 14 3 29 29 H 1.08002 * 119.17918 * 359.97438 * 4 3 2 30 30 H 1.08008 * 119.50807 * 180.02562 * 9 7 6 31 31 H 1.08001 * 120.16218 * 179.97438 * 12 10 9 32 32 H 1.09008 * 109.88377 * 242.66392 * 16 15 14 33 33 H 1.09003 * 109.89000 * 3.84492 * 16 15 14 34 34 H 1.09000 * 110.70594 * 140.66157 * 17 16 15 35 35 H 1.09000 * 110.70233 * 263.72481 * 17 16 15 36 36 H 0.96704 * 114.00566 * 61.44865 * 19 18 17 37 37 H 0.97001 * 119.99234 * 179.97438 * 23 22 20 38 38 H 1.08999 * 110.37199 * 332.46664 * 28 15 14 39 39 H 1.09001 * 110.37446 * 94.80818 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2784 -1.0551 -0.5946 5 7 4.5864 -1.0795 -0.6093 6 6 5.3212 -0.1025 -0.0594 7 6 6.7266 -0.1559 -0.0910 8 9 7.3518 -1.1985 -0.6801 9 6 7.4560 0.8486 0.4737 10 6 6.8299 1.9328 1.0862 11 9 7.5792 2.9153 1.6326 12 6 5.4684 2.0160 1.1351 13 6 4.6899 0.9995 0.5636 14 6 3.2760 1.0548 0.5943 15 7 2.6165 2.1101 1.1902 16 6 1.7601 2.8145 0.2184 17 6 0.3230 2.7998 0.7804 18 6 0.5447 2.5880 2.3012 19 8 0.8463 3.8241 2.9516 20 6 -0.6521 1.9263 2.9342 21 1 -0.5480 0.9611 3.4076 22 6 -1.8801 2.5529 2.9089 23 7 -2.0066 3.7283 2.3328 24 14 -3.3637 1.7322 3.6928 25 1 -3.1023 1.5136 5.1382 26 1 -4.5548 2.6043 3.5311 27 1 -3.6138 0.4262 3.0319 28 6 1.7718 1.6426 2.3099 29 1 2.7313 -1.8668 -1.0510 30 1 8.5347 0.8029 0.4463 31 1 4.9931 2.8602 1.6124 32 1 2.1017 3.8429 0.1003 33 1 1.7881 2.2997 -0.7420 34 1 -0.1741 3.7515 0.5923 35 1 -0.2494 1.9764 0.3533 36 1 0.1424 4.4842 2.8878 37 1 -2.8706 4.1690 2.3147 38 1 1.4580 0.6121 2.1439 39 1 2.3106 1.7289 3.2535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591977019.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:54 Heat of formation + Delta-G solvation = -40.647393 kcal Electronic energy + Delta-G solvation = -30198.428324 eV Core-core repulsion = 25742.376715 eV Total energy + Delta-G solvation = -4456.051609 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.103 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.04037 -50.02319 -42.58321 -40.45293 -38.31938 -37.34096 -36.96956 -34.21760 -33.89281 -32.13767 -31.20592 -30.16709 -30.01266 -27.01492 -26.02239 -25.11264 -23.50058 -21.99782 -21.68235 -21.25430 -19.57131 -19.36611 -18.77458 -18.42563 -17.60404 -17.21761 -16.95770 -16.79423 -16.55914 -16.38440 -16.36589 -15.84525 -15.73712 -15.51727 -15.13400 -14.86439 -14.83613 -14.61343 -14.31423 -14.05778 -13.93544 -13.74794 -13.54556 -13.32948 -13.23234 -12.98438 -12.79966 -12.65963 -12.45236 -12.42272 -12.33883 -11.89383 -11.23184 -11.17429 -11.05331 -10.65787 -10.17756 -10.08335 -9.80574 -9.25755 -8.27028 -6.40119 -1.26098 -0.77277 0.33939 1.23491 1.35358 1.36867 1.43057 1.51815 2.07125 2.26651 2.36667 2.49608 2.67612 2.74934 2.90731 2.99725 3.18965 3.43324 3.48305 3.55530 3.78947 3.81997 3.91855 4.12896 4.14136 4.17373 4.35723 4.49598 4.55095 4.63863 4.74317 4.75701 4.87036 4.89918 5.07904 5.12411 5.37199 5.41889 5.51819 5.55384 5.73979 5.98966 6.06962 6.33108 6.51889 6.61693 7.29822 7.38969 8.78267 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.017468 B = 0.003546 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.520876 B = 7895.370919 C = 8938.892342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.246 3.754 3 C -0.113 4.113 4 C 0.201 3.799 5 N -0.474 5.474 6 C 0.105 3.895 7 C 0.142 3.858 8 F -0.115 7.115 9 C -0.137 4.137 10 C 0.125 3.875 11 F -0.127 7.127 12 C -0.108 4.108 13 C -0.052 4.052 14 C 0.216 3.784 15 N -0.494 5.494 16 C 0.053 3.947 17 C -0.150 4.150 18 C 0.248 3.752 19 O -0.584 6.584 20 C -0.550 4.550 21 H 0.046 0.954 22 C 0.039 3.961 23 N -0.906 5.906 24 Si 0.947 3.053 25 H -0.272 1.272 26 H -0.279 1.279 27 H -0.280 1.280 28 C 0.070 3.930 29 H 0.205 0.795 30 H 0.189 0.811 31 H 0.158 0.842 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.375 0.625 37 H 0.268 0.732 38 H 0.054 0.946 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.912 -5.587 -6.637 19.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.080 5.080 2 C -0.069 4.069 3 C -0.121 4.121 4 C 0.026 3.974 5 N -0.180 5.180 6 C -0.017 4.017 7 C 0.122 3.878 8 F -0.093 7.093 9 C -0.157 4.157 10 C 0.106 3.894 11 F -0.105 7.105 12 C -0.128 4.128 13 C -0.055 4.055 14 C 0.109 3.891 15 N -0.215 5.215 16 C -0.072 4.072 17 C -0.189 4.189 18 C 0.207 3.793 19 O -0.391 6.391 20 C -0.589 4.589 21 H 0.065 0.935 22 C -0.162 4.162 23 N -0.546 5.546 24 Si 0.773 3.227 25 H -0.197 1.197 26 H -0.204 1.204 27 H -0.206 1.206 28 C -0.055 4.055 29 H 0.221 0.779 30 H 0.206 0.794 31 H 0.176 0.824 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.224 0.776 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 17.566 -6.069 -6.733 19.767 hybrid contribution -2.297 0.306 0.495 2.369 sum 15.270 -5.763 -6.238 17.473 Atomic orbital electron populations 1.81311 1.12617 1.06357 1.07688 1.25252 0.92363 0.94925 0.94335 1.18014 0.85573 1.00443 1.08114 1.23270 0.88719 0.94694 0.90756 1.68095 1.07208 1.25036 1.17698 1.18996 0.93548 0.91592 0.97609 1.16547 0.87067 0.86613 0.97605 1.91563 1.81561 1.55078 1.81107 1.21026 1.03765 0.92004 0.98951 1.16803 0.88104 0.87065 0.97469 1.91572 1.76027 1.59718 1.83199 1.21067 0.91976 0.99962 0.99770 1.17927 0.91138 0.95773 1.00710 1.19532 0.92483 0.88429 0.88694 1.60718 1.29762 1.21680 1.09312 1.23007 0.91963 0.99656 0.92618 1.23436 0.94237 1.02227 0.98997 1.19555 0.89580 0.82032 0.88091 1.86111 1.46888 1.26797 1.79338 1.21543 0.94382 1.04849 1.38099 0.93529 1.25502 1.00794 0.95320 0.94595 1.69776 1.25871 1.15195 1.43716 0.85786 0.79273 0.78472 0.79175 1.19675 1.20417 1.20567 1.23122 0.92653 0.96888 0.92858 0.77882 0.79412 0.82397 0.89019 0.92218 0.92176 0.91652 0.77629 0.92235 0.92806 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -15.75 16.08 19.00 0.31 -15.44 16 2 C 0.25 8.05 10.04 88.33 0.89 8.93 16 3 C -0.11 -3.01 5.05 -21.01 -0.11 -3.12 16 4 C 0.20 4.20 10.87 85.38 0.93 5.12 16 5 N -0.47 -10.74 10.16 -187.76 -1.91 -12.64 16 6 C 0.10 2.36 6.61 40.20 0.27 2.62 16 7 C 0.14 2.68 7.30 22.43 0.16 2.85 16 8 F -0.11 -2.27 17.10 44.97 0.77 -1.50 16 9 C -0.14 -2.03 9.89 22.11 0.22 -1.81 16 10 C 0.13 2.26 7.24 22.14 0.16 2.42 16 11 F -0.13 -2.38 17.25 44.97 0.78 -1.61 16 12 C -0.11 -2.35 9.52 22.34 0.21 -2.13 16 13 C -0.05 -1.25 5.75 -21.19 -0.12 -1.37 16 14 C 0.22 6.06 4.64 39.47 0.18 6.24 16 15 N -0.49 -16.46 4.34 -682.86 -2.96 -19.43 16 16 C 0.05 1.84 5.98 86.65 0.52 2.36 16 17 C -0.15 -6.62 4.83 31.77 0.15 -6.46 16 18 C 0.25 11.67 0.87 -10.16 -0.01 11.66 16 19 O -0.58 -28.87 13.16 -148.98 -1.96 -30.83 16 20 C -0.55 -29.03 8.27 25.60 0.21 -28.82 16 21 H 0.05 2.50 7.79 -2.91 -0.02 2.48 16 22 C 0.04 2.06 5.29 84.66 0.45 2.51 16 23 N -0.91 -47.91 10.75 21.45 0.23 -47.68 16 24 Si 0.95 42.85 29.54 68.60 2.03 44.88 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 26 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 27 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 28 C 0.07 2.79 5.29 86.77 0.46 3.25 16 29 H 0.20 2.86 8.06 -2.91 -0.02 2.84 16 30 H 0.19 1.60 8.06 -2.91 -0.02 1.58 16 31 H 0.16 3.72 7.59 -2.91 -0.02 3.70 16 32 H 0.09 3.06 8.14 -2.38 -0.02 3.04 16 33 H 0.06 1.91 6.49 -2.39 -0.02 1.89 16 34 H 0.06 2.89 7.53 -2.39 -0.02 2.87 16 35 H 0.07 3.06 4.91 -2.39 -0.01 3.05 16 36 H 0.37 19.06 7.56 -74.05 -0.56 18.50 16 37 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 38 H 0.05 2.17 5.52 -2.39 -0.01 2.15 16 39 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -59.20 335.23 2.45 -56.75 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.60 Total: 23.23 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 4.57 Total: 4.26 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -4.33 Total: -95.19 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -1.96 Total: -30.83 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 1.54 Total: -3.11 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -59.20 2.45 -56.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977019.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.100 kcal (2) G-P(sol) polarization free energy of solvation -59.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds