Wall clock time and date at job start Wed Apr 1 2020 04:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00014 * 2 1 4 4 H 1.48504 * 109.47014 * 274.99428 * 3 2 1 5 5 H 1.48501 * 109.47035 * 34.99361 * 3 2 1 6 6 H 1.48496 * 109.47539 * 154.99520 * 3 2 1 7 7 C 1.37874 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99912 * 184.92691 * 7 2 1 9 9 C 1.50693 * 120.00142 * 4.93330 * 7 2 1 10 10 O 1.42899 * 110.88687 * 298.63068 * 9 7 2 11 11 C 1.55156 * 111.00727 * 174.75213 * 9 7 2 12 12 C 1.54325 * 102.94409 * 206.38695 * 11 9 7 13 13 N 1.47023 * 107.27118 * 22.18754 * 12 11 9 14 14 C 1.34775 * 125.64641 * 181.02372 * 13 12 11 15 15 O 1.21668 * 119.99768 * 180.02562 * 14 13 12 16 16 C 1.46918 * 120.00082 * 0.02925 * 14 13 12 17 17 C 1.36368 * 126.76578 * 359.97438 * 16 14 13 18 18 N 1.35480 * 109.76552 * 180.02562 * 17 16 14 19 19 H 0.96995 * 124.78184 * 180.02562 * 18 17 16 20 20 C 1.37962 * 110.42520 * 0.02562 * 18 17 16 21 21 C 1.39118 * 133.18733 * 179.97438 * 20 18 17 22 22 C 1.37763 * 119.92986 * 180.02562 * 21 20 18 23 23 N 1.48025 * 119.68592 * 180.27581 * 22 21 20 24 24 O 1.21791 * 120.00453 * 179.72430 * 23 22 21 25 25 O 1.21799 * 119.99257 * 359.72698 * 23 22 21 26 26 C 1.38759 * 120.63469 * 359.97438 * 22 21 20 27 27 C 1.37749 * 120.29912 * 0.02562 * 26 22 21 28 28 C 1.39274 * 119.67143 * 359.97438 * 27 26 22 29 29 C 1.47420 * 108.70002 * 1.29087 * 13 12 11 30 30 H 0.97004 * 120.00039 * 0.02562 * 1 2 3 31 31 H 0.96697 * 114.00196 * 56.11374 * 10 9 7 32 32 H 1.09001 * 110.72502 * 88.01554 * 11 9 7 33 33 H 1.09010 * 110.72028 * 324.74790 * 11 9 7 34 34 H 1.09004 * 109.88074 * 262.76904 * 12 11 9 35 35 H 1.08996 * 110.01452 * 141.68212 * 12 11 9 36 36 H 1.07995 * 125.12084 * 0.02562 * 17 16 14 37 37 H 1.07997 * 120.03910 * 0.06304 * 21 20 18 38 38 H 1.07999 * 119.84690 * 179.97438 * 26 22 21 39 39 H 1.08001 * 120.16519 * 179.97438 * 27 26 22 40 40 H 1.09002 * 110.36696 * 94.48702 * 29 13 12 41 41 H 1.09004 * 110.36476 * 216.80335 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3910 2.1073 -1.3948 5 1 1.5033 2.6199 0.8029 6 1 3.5954 1.4121 0.5918 7 6 2.0045 -1.1940 0.0005 8 1 3.0815 -1.1957 0.0809 9 6 1.2552 -2.4967 -0.1111 10 8 0.3616 -2.6666 0.9910 11 6 2.2353 -3.6944 -0.2220 12 6 1.4060 -4.7505 -0.9825 13 7 0.3486 -4.0339 -1.7103 14 6 -0.5996 -4.6036 -2.4803 15 8 -1.4282 -3.9092 -3.0384 16 6 -0.6326 -6.0631 -2.6456 17 6 0.2226 -6.9672 -2.0881 18 7 -0.1230 -8.2204 -2.4697 19 1 0.3396 -9.0287 -2.1986 20 6 -1.2255 -8.1846 -3.2983 21 6 -1.9603 -9.1708 -3.9485 22 6 -3.0397 -8.8211 -4.7298 23 7 -3.8214 -9.8754 -5.4143 24 8 -4.7798 -9.5731 -6.1024 25 8 -3.5062 -11.0452 -5.2893 26 6 -3.4049 -7.4905 -4.8764 27 6 -2.6899 -6.4995 -4.2407 28 6 -1.5964 -6.8389 -3.4477 29 6 0.5012 -2.5885 -1.4637 30 1 -0.4850 0.8401 -0.0004 31 1 -0.2700 -1.9426 1.1005 32 1 2.5114 -4.0598 0.7672 33 1 3.1215 -3.4160 -0.7925 34 1 0.9605 -5.4510 -0.2760 35 1 2.0416 -5.2880 -1.6861 36 1 1.0507 -6.7214 -1.4399 37 1 -1.6853 -10.2096 -3.8404 38 1 -4.2531 -7.2306 -5.4924 39 1 -2.9758 -5.4645 -4.3566 40 1 1.0867 -2.1276 -2.2592 41 1 -0.4760 -2.1117 -1.3858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592837075.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:24 Heat of formation + Delta-G solvation = -14.388142 kcal Electronic energy + Delta-G solvation = -29498.102489 eV Core-core repulsion = 25154.277082 eV Total energy + Delta-G solvation = -4343.825407 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.43910 -41.82808 -39.33002 -37.56436 -37.17832 -36.70082 -34.44548 -32.69757 -32.28660 -30.83743 -30.40409 -29.78182 -28.03683 -26.30002 -25.27024 -23.83294 -23.46282 -22.13877 -21.59084 -19.84720 -19.68250 -19.06975 -18.74587 -17.66874 -17.53717 -17.29457 -16.71775 -16.35226 -15.53253 -15.37190 -15.05339 -14.81469 -14.67247 -14.46974 -14.24882 -14.07562 -13.28873 -13.17040 -12.97738 -12.50196 -12.46168 -12.19347 -11.94812 -11.69046 -11.66900 -11.52826 -11.32117 -11.28764 -11.13558 -10.90431 -10.77059 -10.57841 -10.36391 -10.27591 -9.63685 -9.47023 -9.08818 -8.78105 -8.50427 -8.38695 -7.91254 -6.38265 -4.47901 -0.37424 0.60807 1.18061 1.19454 1.70952 2.45957 3.06321 3.14000 3.23014 3.24631 3.42773 3.68736 4.07394 4.18020 4.25364 4.33301 4.46312 4.59825 4.75976 4.88607 4.94000 5.11874 5.15482 5.26531 5.37304 5.49522 5.58344 5.75456 5.80253 5.95071 5.97312 6.12736 6.15266 6.32758 6.38814 6.56648 6.70914 6.77941 6.86115 7.14358 7.23957 7.50550 7.64653 7.88835 8.06419 8.55385 8.62522 9.20798 9.33155 10.69005 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.027276 B = 0.002326 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.307960 B =12036.186603 C =12748.055765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.250 3.750 10 O -0.585 6.585 11 C -0.119 4.119 12 C 0.094 3.906 13 N -0.603 5.603 14 C 0.592 3.408 15 O -0.548 6.548 16 C -0.212 4.212 17 C 0.115 3.885 18 N -0.573 5.573 19 H 0.426 0.574 20 C 0.079 3.921 21 C -0.051 4.051 22 C -0.030 4.030 23 N 0.035 4.965 24 O -0.159 6.159 25 O -0.172 6.172 26 C -0.092 4.092 27 C -0.051 4.051 28 C -0.020 4.020 29 C 0.095 3.905 30 H 0.272 0.728 31 H 0.386 0.614 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.202 0.798 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.159 0.841 40 H 0.063 0.937 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.210 -16.389 -4.442 17.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.579 4.579 8 H 0.086 0.914 9 C 0.209 3.791 10 O -0.394 6.394 11 C -0.157 4.157 12 C -0.029 4.029 13 N -0.335 5.335 14 C 0.381 3.619 15 O -0.427 6.427 16 C -0.222 4.222 17 C -0.017 4.017 18 N -0.175 5.175 19 H 0.264 0.736 20 C -0.027 4.027 21 C -0.073 4.073 22 C -0.115 4.115 23 N 0.553 4.447 24 O -0.375 6.375 25 O -0.386 6.386 26 C -0.112 4.112 27 C -0.070 4.070 28 C -0.025 4.025 29 C -0.026 4.026 30 H 0.082 0.918 31 H 0.238 0.762 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.219 0.781 37 H 0.170 0.830 38 H 0.172 0.828 39 H 0.177 0.823 40 H 0.081 0.919 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.337 -16.085 -4.335 16.713 hybrid contribution 0.222 0.681 -0.104 0.724 sum 1.559 -15.404 -4.439 16.107 Atomic orbital electron populations 1.69624 1.06037 1.28116 1.49237 1.25084 0.95028 0.99843 0.93250 0.86387 0.79844 0.82452 0.78235 1.20394 1.20953 1.19658 1.21462 0.94033 0.90071 1.52375 0.91416 1.19634 0.85707 0.91524 0.82260 1.86061 1.51191 1.50882 1.51316 1.22654 0.97973 0.95424 0.99607 1.22312 0.89685 0.96354 0.94588 1.48548 1.28380 1.10271 1.46276 1.16683 0.80926 0.85158 0.79176 1.90764 1.39247 1.63736 1.48961 1.20335 1.00455 0.93841 1.07546 1.23325 0.99080 0.82201 0.97102 1.41587 1.25596 1.09025 1.41271 0.73563 1.17715 0.92230 0.94243 0.98545 1.19563 0.92824 0.99826 0.95047 1.20516 0.98129 0.87960 1.04847 1.43530 1.00201 1.01879 0.99087 1.94539 1.18330 1.88196 1.36481 1.94517 1.73510 1.02925 1.67611 1.20771 1.01209 0.88863 1.00360 1.20736 0.92196 1.00630 0.93467 1.19130 0.95480 0.90969 0.96953 1.23343 1.02941 0.76669 0.99642 0.91813 0.76238 0.90506 0.90159 0.91854 0.92379 0.78135 0.83040 0.82763 0.82309 0.91918 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.71 10.71 55.43 0.59 -22.12 16 2 C 0.07 1.77 5.26 -17.82 -0.09 1.68 16 3 Si 0.90 19.44 29.54 -169.99 -5.02 14.42 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.54 -13.16 8.26 -34.44 -0.28 -13.45 16 8 H 0.07 1.61 7.79 -52.48 -0.41 1.20 16 9 C 0.25 5.54 0.89 -89.51 -0.08 5.46 16 10 O -0.58 -13.94 13.20 -35.23 -0.47 -14.41 16 11 C -0.12 -2.04 6.12 -24.90 -0.15 -2.19 16 12 C 0.09 1.34 5.00 -3.06 -0.02 1.33 16 13 N -0.60 -11.11 3.32 -171.83 -0.57 -11.68 16 14 C 0.59 10.94 7.83 -12.75 -0.10 10.84 16 15 O -0.55 -12.01 16.41 5.22 0.09 -11.92 16 16 C -0.21 -2.97 6.25 -103.31 -0.65 -3.62 16 17 C 0.12 1.10 10.37 -16.61 -0.17 0.93 16 18 N -0.57 -4.26 5.99 -10.49 -0.06 -4.32 16 19 H 0.43 1.46 8.96 -40.82 -0.37 1.09 16 20 C 0.08 0.81 7.26 -83.97 -0.61 0.20 16 21 C -0.05 -0.50 9.57 -39.43 -0.38 -0.87 16 22 C -0.03 -0.35 6.85 -79.92 -0.55 -0.90 16 23 N 0.04 0.45 4.45 33.97 0.15 0.60 16 24 O -0.16 -2.17 18.42 -29.46 -0.54 -2.71 16 25 O -0.17 -2.26 18.41 -29.46 -0.54 -2.81 16 26 C -0.09 -1.03 9.53 -39.57 -0.38 -1.41 16 27 C -0.05 -0.65 9.85 -39.38 -0.39 -1.03 16 28 C -0.02 -0.26 6.27 -104.95 -0.66 -0.91 16 29 C 0.10 2.11 5.52 -2.41 -0.01 2.10 16 30 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.39 9.67 7.18 45.56 0.33 9.99 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.08 1.29 8.03 -51.92 -0.42 0.87 16 34 H 0.06 0.79 6.86 -51.93 -0.36 0.44 16 35 H 0.06 0.63 7.01 -51.93 -0.36 0.26 16 36 H 0.20 1.44 4.29 -52.49 -0.23 1.21 16 37 H 0.15 1.13 7.58 -52.49 -0.40 0.73 16 38 H 0.15 1.49 7.59 -52.49 -0.40 1.09 16 39 H 0.16 2.09 7.45 -52.49 -0.39 1.70 16 40 H 0.06 1.43 8.04 -51.93 -0.42 1.01 16 41 H 0.09 2.20 7.50 -51.93 -0.39 1.81 16 LS Contribution 351.32 15.07 5.29 5.29 Total: -1.00 -30.69 351.32 -8.95 -39.64 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -3.36 Total: 11.86 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -4.51 Total: -1.85 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.11 Total: -37.52 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -1.46 Total: -31.85 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.69 -8.95 -39.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592837075.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.255 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds