Wall clock time and date at job start Wed Apr 1 2020 04:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00014 * 2 1 4 4 H 1.48504 * 109.47014 * 274.99428 * 3 2 1 5 5 H 1.48501 * 109.47035 * 34.99361 * 3 2 1 6 6 H 1.48496 * 109.47539 * 154.99520 * 3 2 1 7 7 C 1.37874 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99912 * 184.92691 * 7 2 1 9 9 C 1.50693 * 120.00142 * 4.93330 * 7 2 1 10 10 O 1.42899 * 110.88687 * 298.63068 * 9 7 2 11 11 C 1.55156 * 111.00727 * 174.75213 * 9 7 2 12 12 C 1.54325 * 102.94409 * 206.38695 * 11 9 7 13 13 N 1.47023 * 107.27118 * 22.18754 * 12 11 9 14 14 C 1.34775 * 125.64641 * 181.02372 * 13 12 11 15 15 O 1.21668 * 119.99768 * 180.02562 * 14 13 12 16 16 C 1.46918 * 120.00082 * 0.02925 * 14 13 12 17 17 C 1.36368 * 126.76578 * 359.97438 * 16 14 13 18 18 N 1.35480 * 109.76552 * 180.02562 * 17 16 14 19 19 H 0.96995 * 124.78184 * 180.02562 * 18 17 16 20 20 C 1.37962 * 110.42520 * 0.02562 * 18 17 16 21 21 C 1.39118 * 133.18733 * 179.97438 * 20 18 17 22 22 C 1.37763 * 119.92986 * 180.02562 * 21 20 18 23 23 N 1.48025 * 119.68592 * 180.27581 * 22 21 20 24 24 O 1.21791 * 120.00453 * 179.72430 * 23 22 21 25 25 O 1.21799 * 119.99257 * 359.72698 * 23 22 21 26 26 C 1.38759 * 120.63469 * 359.97438 * 22 21 20 27 27 C 1.37749 * 120.29912 * 0.02562 * 26 22 21 28 28 C 1.39274 * 119.67143 * 359.97438 * 27 26 22 29 29 C 1.47420 * 108.70002 * 1.29087 * 13 12 11 30 30 H 0.97004 * 120.00039 * 0.02562 * 1 2 3 31 31 H 0.96697 * 114.00196 * 56.11374 * 10 9 7 32 32 H 1.09001 * 110.72502 * 88.01554 * 11 9 7 33 33 H 1.09010 * 110.72028 * 324.74790 * 11 9 7 34 34 H 1.09004 * 109.88074 * 262.76904 * 12 11 9 35 35 H 1.08996 * 110.01452 * 141.68212 * 12 11 9 36 36 H 1.07995 * 125.12084 * 0.02562 * 17 16 14 37 37 H 1.07997 * 120.03910 * 0.06304 * 21 20 18 38 38 H 1.07999 * 119.84690 * 179.97438 * 26 22 21 39 39 H 1.08001 * 120.16519 * 179.97438 * 27 26 22 40 40 H 1.09002 * 110.36696 * 94.48702 * 29 13 12 41 41 H 1.09004 * 110.36476 * 216.80335 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3910 2.1073 -1.3948 5 1 1.5033 2.6199 0.8029 6 1 3.5954 1.4121 0.5918 7 6 2.0045 -1.1940 0.0005 8 1 3.0815 -1.1957 0.0809 9 6 1.2552 -2.4967 -0.1111 10 8 0.3616 -2.6666 0.9910 11 6 2.2353 -3.6944 -0.2220 12 6 1.4060 -4.7505 -0.9825 13 7 0.3486 -4.0339 -1.7103 14 6 -0.5996 -4.6036 -2.4803 15 8 -1.4282 -3.9092 -3.0384 16 6 -0.6326 -6.0631 -2.6456 17 6 0.2226 -6.9672 -2.0881 18 7 -0.1230 -8.2204 -2.4697 19 1 0.3396 -9.0287 -2.1986 20 6 -1.2255 -8.1846 -3.2983 21 6 -1.9603 -9.1708 -3.9485 22 6 -3.0397 -8.8211 -4.7298 23 7 -3.8214 -9.8754 -5.4143 24 8 -4.7798 -9.5731 -6.1024 25 8 -3.5062 -11.0452 -5.2893 26 6 -3.4049 -7.4905 -4.8764 27 6 -2.6899 -6.4995 -4.2407 28 6 -1.5964 -6.8389 -3.4477 29 6 0.5012 -2.5885 -1.4637 30 1 -0.4850 0.8401 -0.0004 31 1 -0.2700 -1.9426 1.1005 32 1 2.5114 -4.0598 0.7672 33 1 3.1215 -3.4160 -0.7925 34 1 0.9605 -5.4510 -0.2760 35 1 2.0416 -5.2880 -1.6861 36 1 1.0507 -6.7214 -1.4399 37 1 -1.6853 -10.2096 -3.8404 38 1 -4.2531 -7.2306 -5.4924 39 1 -2.9758 -5.4645 -4.3566 40 1 1.0867 -2.1276 -2.2592 41 1 -0.4760 -2.1117 -1.3858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592837075.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:23 Heat of formation + Delta-G solvation = -35.719225 kcal Electronic energy + Delta-G solvation = -29499.027474 eV Core-core repulsion = 25154.277082 eV Total energy + Delta-G solvation = -4344.750392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.37645 -42.73788 -40.74107 -38.74116 -38.44608 -37.69221 -36.07788 -34.18151 -33.62691 -32.11373 -31.38069 -30.88194 -29.53754 -27.52096 -26.71658 -25.11260 -24.41202 -23.07878 -22.74022 -21.46524 -20.66192 -20.15098 -19.79614 -19.08254 -18.63681 -18.45703 -17.70691 -17.54832 -17.09390 -16.74890 -16.29324 -15.93150 -15.86203 -15.82847 -15.20883 -15.11413 -14.79972 -14.60756 -14.59707 -13.65335 -13.55657 -13.43997 -13.31260 -13.15393 -12.87871 -12.81800 -12.67261 -12.38045 -12.32332 -12.30850 -12.29889 -12.17569 -12.07531 -11.27497 -11.21587 -11.03155 -10.63453 -10.29169 -9.93176 -9.54096 -9.18217 -8.25724 -6.41652 -1.29764 -0.31062 0.26241 0.26946 0.74207 1.41370 1.44921 1.53731 1.69808 2.07529 2.11749 2.38886 2.49561 3.01784 3.24721 3.42190 3.46083 3.55324 3.77830 3.80053 3.87830 4.04604 4.09507 4.17809 4.30556 4.42360 4.45302 4.61540 4.62568 4.76714 4.85279 5.02595 5.07772 5.11483 5.13507 5.20426 5.34428 5.45437 5.48867 5.51338 5.77838 6.06493 6.25406 6.49301 6.64003 6.73407 7.23520 7.30133 7.38927 8.79458 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.027276 B = 0.002326 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.307960 B =12036.186603 C =12748.055765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.960 3.040 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.231 3.769 10 O -0.589 6.589 11 C -0.113 4.113 12 C 0.090 3.910 13 N -0.609 5.609 14 C 0.584 3.416 15 O -0.603 6.603 16 C -0.262 4.262 17 C 0.167 3.833 18 N -0.541 5.541 19 H 0.452 0.548 20 C 0.083 3.917 21 C -0.025 4.025 22 C -0.047 4.047 23 N 0.038 4.962 24 O -0.192 6.192 25 O -0.162 6.162 26 C -0.083 4.083 27 C -0.075 4.075 28 C -0.037 4.037 29 C 0.108 3.892 30 H 0.269 0.731 31 H 0.375 0.625 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.236 0.764 37 H 0.185 0.815 38 H 0.160 0.840 39 H 0.138 0.862 40 H 0.044 0.956 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.067 -19.945 -3.591 20.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.176 4.176 3 Si 0.786 3.214 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.592 4.592 8 H 0.090 0.910 9 C 0.190 3.810 10 O -0.398 6.398 11 C -0.151 4.151 12 C -0.031 4.031 13 N -0.340 5.340 14 C 0.377 3.623 15 O -0.486 6.486 16 C -0.272 4.272 17 C 0.031 3.969 18 N -0.144 5.144 19 H 0.296 0.704 20 C -0.024 4.024 21 C -0.046 4.046 22 C -0.131 4.131 23 N 0.553 4.447 24 O -0.401 6.401 25 O -0.380 6.380 26 C -0.103 4.103 27 C -0.094 4.094 28 C -0.043 4.043 29 C -0.015 4.015 30 H 0.078 0.922 31 H 0.225 0.775 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.127 0.873 36 H 0.252 0.748 37 H 0.202 0.798 38 H 0.178 0.822 39 H 0.156 0.844 40 H 0.063 0.937 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.194 -19.700 -3.501 20.444 hybrid contribution -0.608 1.721 -0.330 1.855 sum 3.586 -17.979 -3.831 18.729 Atomic orbital electron populations 1.69751 1.07228 1.28367 1.50264 1.25819 0.95656 1.02833 0.93270 0.85500 0.79006 0.79007 0.77870 1.20582 1.21248 1.18653 1.21850 0.94407 0.91312 1.51662 0.91029 1.19914 0.86296 0.93391 0.81396 1.86048 1.51241 1.50332 1.52131 1.22661 0.97389 0.93825 1.01206 1.22642 0.88944 0.95762 0.95734 1.48545 1.29705 1.08827 1.46899 1.17364 0.79839 0.87080 0.78050 1.90723 1.41298 1.65493 1.51124 1.19906 1.03886 0.91700 1.11709 1.23597 0.97378 0.81721 0.94219 1.41540 1.24139 1.09514 1.39236 0.70378 1.17585 0.93013 0.92740 0.99043 1.19823 0.90976 1.01165 0.92610 1.20578 0.99081 0.87443 1.06018 1.43668 1.00106 1.02028 0.98907 1.94552 1.19362 1.88317 1.37863 1.94488 1.73134 1.03302 1.67058 1.20774 1.00940 0.88896 0.99684 1.20581 0.93542 1.00030 0.95273 1.19341 0.95468 0.92566 0.96928 1.22839 0.99957 0.79271 0.99475 0.92201 0.77508 0.89061 0.88985 0.89097 0.87345 0.74794 0.79813 0.82204 0.84440 0.93740 0.94289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.88 10.71 21.45 0.23 -48.65 16 2 C 0.03 1.26 5.26 84.65 0.44 1.71 16 3 Si 0.96 40.47 29.54 68.60 2.03 42.50 16 4 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.55 -27.15 8.26 25.60 0.21 -26.94 16 8 H 0.07 3.36 7.79 -2.91 -0.02 3.34 16 9 C 0.23 10.27 0.89 -10.07 -0.01 10.26 16 10 O -0.59 -28.52 13.20 -148.98 -1.97 -30.49 16 11 C -0.11 -3.56 6.12 31.78 0.19 -3.37 16 12 C 0.09 2.23 5.00 86.73 0.43 2.67 16 13 N -0.61 -22.21 3.32 -815.79 -2.71 -24.92 16 14 C 0.58 22.00 7.83 86.52 0.68 22.68 16 15 O -0.60 -28.47 16.41 -4.25 -0.07 -28.54 16 16 C -0.26 -6.90 6.25 -19.01 -0.12 -7.02 16 17 C 0.17 2.33 10.37 83.69 0.87 3.20 16 18 N -0.54 -4.91 5.99 -187.09 -1.12 -6.03 16 19 H 0.45 -0.17 8.96 -92.71 -0.83 -1.00 16 20 C 0.08 1.38 7.26 38.91 0.28 1.66 16 21 C -0.02 -0.39 9.57 22.37 0.21 -0.17 16 22 C -0.05 -0.99 6.85 36.39 0.25 -0.74 16 23 N 0.04 0.92 4.45 -46.43 -0.21 0.71 16 24 O -0.19 -5.21 18.42 18.90 0.35 -4.86 16 25 O -0.16 -3.86 18.41 18.89 0.35 -3.51 16 26 C -0.08 -1.87 9.53 22.28 0.21 -1.66 16 27 C -0.07 -1.97 9.85 22.40 0.22 -1.75 16 28 C -0.04 -0.94 6.27 -20.08 -0.13 -1.06 16 29 C 0.11 4.98 5.52 86.93 0.48 5.46 16 30 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 31 H 0.38 19.67 7.18 -74.06 -0.53 19.14 16 32 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.09 2.66 8.03 -2.38 -0.02 2.64 16 34 H 0.09 1.78 6.86 -2.39 -0.02 1.76 16 35 H 0.11 1.65 7.01 -2.39 -0.02 1.63 16 36 H 0.24 1.65 4.29 -2.91 -0.01 1.64 16 37 H 0.18 1.71 7.58 -2.91 -0.02 1.69 16 38 H 0.16 3.27 7.59 -2.91 -0.02 3.25 16 39 H 0.14 4.11 7.45 -2.91 -0.02 4.09 16 40 H 0.04 2.15 8.04 -2.39 -0.02 2.13 16 41 H 0.04 2.14 7.50 -2.39 -0.02 2.12 16 Total: -1.00 -73.96 351.32 0.89 -73.08 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -0.22 Total: 25.78 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 4.23 Total: 4.93 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -3.81 Total: -78.89 kcal Atomic # 8 Polarization: -66.06 SS G_CDS: -1.34 Total: -67.40 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -73.96 0.89 -73.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592837075.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.357 kcal (2) G-P(sol) polarization free energy of solvation -73.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds