Wall clock time and date at job start Wed Apr 1 2020 03:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50696 * 120.00299 * 2 1 4 4 N 1.46505 * 109.47467 * 124.99402 * 3 2 1 5 5 C 1.46499 * 120.00237 * 275.00452 * 4 3 2 6 6 C 1.50696 * 109.46959 * 274.99766 * 5 4 3 7 7 H 1.08003 * 120.00115 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99971 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00043 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00061 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46768 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47088 * 119.99301 * 10 8 6 13 13 H 1.48502 * 109.46811 * 239.99607 * 10 8 6 14 14 S 1.65606 * 119.99870 * 94.99806 * 4 3 2 15 15 O 1.42105 * 104.27565 * 333.93387 * 14 4 3 16 16 O 1.42095 * 104.27795 * 206.07679 * 14 4 3 17 17 C 1.81401 * 104.44734 * 90.00101 * 14 4 3 18 18 C 1.52994 * 109.47083 * 179.97438 * 17 14 4 19 19 C 1.50701 * 109.47170 * 180.02562 * 18 17 14 20 20 C 1.38425 * 120.02136 * 90.00332 * 19 18 17 21 21 F 1.35101 * 120.01402 * 359.70506 * 20 19 18 22 22 C 1.38476 * 119.97328 * 179.97438 * 20 19 18 23 23 C 1.38207 * 120.02410 * 0.02562 * 22 20 19 24 24 C 1.38207 * 120.05360 * 359.97438 * 23 22 20 25 25 C 1.38412 * 120.02814 * 269.97965 * 19 18 17 26 26 F 1.35096 * 120.01191 * 0.02562 * 25 19 18 27 27 H 1.08000 * 120.00383 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.99811 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.99811 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.47372 * 4.99766 * 3 2 1 31 31 H 1.09002 * 109.47509 * 244.99422 * 3 2 1 32 32 H 1.09000 * 109.47118 * 34.99382 * 5 4 3 33 33 H 1.09003 * 109.47235 * 154.99641 * 5 4 3 34 34 H 0.96998 * 120.00116 * 180.02562 * 9 8 6 35 35 H 1.09008 * 109.46697 * 60.00271 * 17 14 4 36 36 H 1.08994 * 109.47368 * 300.00822 * 17 14 4 37 37 H 1.09008 * 109.46866 * 60.00700 * 18 17 14 38 38 H 1.09006 * 109.47655 * 300.00561 * 18 17 14 39 39 H 1.08001 * 119.98752 * 179.97438 * 22 20 19 40 40 H 1.08000 * 119.97200 * 180.02562 * 23 22 20 41 41 H 1.07995 * 119.99247 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5284 1.7621 2.4523 6 6 2.5991 3.2646 2.5449 7 1 2.9554 3.8413 1.7042 8 6 2.2098 3.9029 3.7034 9 7 1.7763 3.2006 4.7274 10 14 2.2967 5.7654 3.8180 11 1 2.8144 6.3163 2.5398 12 1 0.9396 6.3092 4.0783 13 1 3.2058 6.1512 4.9271 14 16 4.5713 0.8758 0.9175 15 8 4.5315 -0.0151 -0.1889 16 8 4.9847 0.4306 2.2020 17 6 5.4291 2.4099 0.4689 18 6 6.9136 2.1168 0.2428 19 6 7.6263 3.3914 -0.1293 20 6 8.1730 4.1928 0.8582 21 9 8.0626 3.8357 2.1564 22 6 8.8282 5.3635 0.5151 23 6 8.9360 5.7321 -0.8126 24 6 8.3906 4.9327 -1.7993 25 6 7.7353 3.7613 -1.4586 26 9 7.2023 2.9801 -2.4233 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3586 2.1317 0.0895 31 1 2.6214 1.4025 -0.9313 32 1 1.4982 1.4372 2.5982 33 1 3.1612 1.3205 3.2222 34 1 1.5021 3.6497 5.5423 35 1 5.3211 3.1356 1.2751 36 1 4.9950 2.8150 -0.4451 37 1 7.0219 1.3909 -0.5632 38 1 7.3475 1.7119 1.1572 39 1 9.2544 5.9892 1.2853 40 1 9.4475 6.6451 -1.0792 41 1 8.4750 5.2219 -2.8364 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599320028.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:21 Heat of formation + Delta-G solvation = -118.562016 kcal Electronic energy + Delta-G solvation = -28586.807187 eV Core-core repulsion = 24230.528146 eV Total energy + Delta-G solvation = -4356.279041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.17600 -49.06711 -39.12687 -36.63054 -36.31575 -35.35323 -34.58621 -33.20831 -31.89473 -30.51742 -29.83195 -27.49769 -24.98079 -24.68866 -23.07997 -22.35890 -21.53507 -19.65907 -18.33364 -18.21176 -17.55797 -17.00391 -16.62900 -16.30468 -16.03002 -15.89448 -15.73649 -15.57751 -15.38496 -14.83128 -14.55487 -14.46167 -14.00109 -13.90060 -13.51865 -13.01413 -12.95130 -12.87140 -12.48142 -12.19985 -12.14336 -12.06364 -11.74355 -11.70926 -11.52140 -11.28609 -11.25583 -11.17899 -10.87339 -10.76043 -10.53358 -10.33486 -10.05748 -9.78959 -9.08587 -9.02296 -8.97877 -8.52159 -8.06230 -6.13724 -4.21417 0.66756 0.73304 0.89130 2.63887 3.09203 3.21809 3.29691 3.31278 3.41845 3.68785 4.18684 4.21286 4.32200 4.37931 4.39280 4.57277 4.68118 4.84740 4.88862 5.07810 5.20469 5.30633 5.33138 5.49433 5.52242 5.60685 5.69024 5.70148 5.70361 5.87300 5.88543 6.04280 6.15006 6.33053 6.47080 6.52668 7.01546 7.09899 7.37366 7.42467 7.63291 7.82788 8.11635 8.83323 9.45166 10.94122 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.009077 B = 0.004773 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.953810 B = 5864.683596 C = 7686.556244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C 0.157 3.843 4 N -0.979 5.979 5 C 0.243 3.757 6 C -0.547 4.547 7 H 0.062 0.938 8 C 0.067 3.933 9 N -0.885 5.885 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.282 1.282 14 S 2.610 3.390 15 O -0.972 6.972 16 O -0.950 6.950 17 C -0.632 4.632 18 C -0.071 4.071 19 C -0.143 4.143 20 C 0.137 3.863 21 F -0.121 7.121 22 C -0.163 4.163 23 C -0.066 4.066 24 C -0.165 4.165 25 C 0.131 3.869 26 F -0.127 7.127 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.055 0.945 34 H 0.265 0.735 35 H 0.145 0.855 36 H 0.127 0.873 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.417 3.430 -12.627 17.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.177 4.177 3 C 0.030 3.970 4 N -0.817 5.817 5 C 0.121 3.879 6 C -0.586 4.586 7 H 0.080 0.920 8 C -0.137 4.137 9 N -0.523 5.523 10 Si 0.718 3.282 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.208 1.208 14 S 2.702 3.298 15 O -0.963 6.963 16 O -0.941 6.941 17 C -0.759 4.759 18 C -0.109 4.109 19 C -0.145 4.145 20 C 0.117 3.883 21 F -0.099 7.099 22 C -0.182 4.182 23 C -0.084 4.084 24 C -0.184 4.184 25 C 0.112 3.888 26 F -0.105 7.105 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.126 0.874 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.164 0.836 36 H 0.145 0.855 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.654 2.543 -12.299 17.133 hybrid contribution -0.256 1.732 0.160 1.758 sum 11.398 4.275 -12.138 17.191 Atomic orbital electron populations 1.23765 0.95806 1.01517 1.01686 1.23436 0.96247 0.99383 0.98672 1.20199 0.93160 0.95583 0.88021 1.57390 1.23869 1.82780 1.17642 1.19257 0.97311 0.94595 0.76717 1.21606 1.45179 0.92077 0.99772 0.92029 1.24943 0.94866 0.98393 0.95508 1.69944 1.42786 1.35522 1.04076 0.86560 0.77883 0.85514 0.78204 1.19732 1.20810 1.20763 1.04882 0.74429 0.76369 0.74102 1.93535 1.86315 1.60684 1.55731 1.93575 1.82015 1.79022 1.39471 1.30819 1.05635 1.26394 1.13021 1.20167 0.92005 0.94634 1.04133 1.19728 1.03383 0.99599 0.91822 1.17272 0.98438 0.94207 0.78381 1.91587 1.93892 1.91481 1.32983 1.21247 1.02348 0.96430 0.98153 1.20837 0.97324 0.99123 0.91160 1.21190 1.01287 0.94329 1.01544 1.17212 0.96816 0.90437 0.84348 1.91537 1.83871 1.73480 1.61634 0.88924 0.88456 0.87419 0.89570 0.90842 0.94018 0.92701 0.92561 0.83646 0.85470 0.88887 0.88577 0.83829 0.83916 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.83 14.32 29.02 0.42 -2.41 16 2 C -0.16 -2.65 9.84 -36.03 -0.35 -3.01 16 3 C 0.16 2.75 5.69 -5.19 -0.03 2.72 16 4 N -0.98 -20.11 2.68 -116.94 -0.31 -20.42 16 5 C 0.24 6.03 5.41 -5.20 -0.03 6.00 16 6 C -0.55 -14.20 9.38 -34.44 -0.32 -14.53 16 7 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 8 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -25.29 13.29 55.43 0.74 -24.55 16 10 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 S 2.61 50.53 5.37 -107.50 -0.58 49.95 16 15 O -0.97 -19.18 16.99 -57.54 -0.98 -20.16 16 16 O -0.95 -21.71 16.53 -57.54 -0.95 -22.66 16 17 C -0.63 -10.25 6.16 37.15 0.23 -10.02 16 18 C -0.07 -1.03 5.00 -27.89 -0.14 -1.17 16 19 C -0.14 -1.90 5.15 -104.49 -0.54 -2.44 16 20 C 0.14 1.77 7.24 -39.42 -0.29 1.48 16 21 F -0.12 -1.81 16.48 2.25 0.04 -1.77 16 22 C -0.16 -1.60 10.03 -39.50 -0.40 -2.00 16 23 C -0.07 -0.53 10.04 -39.60 -0.40 -0.93 16 24 C -0.16 -1.50 10.03 -39.50 -0.40 -1.89 16 25 C 0.13 1.57 7.24 -39.43 -0.29 1.28 16 26 F -0.13 -1.61 16.48 2.25 0.04 -1.57 16 27 H 0.09 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.10 1.39 7.84 -52.48 -0.41 0.98 16 29 H 0.11 1.84 8.06 -52.48 -0.42 1.42 16 30 H 0.09 1.49 7.76 -51.93 -0.40 1.09 16 31 H 0.07 1.12 7.61 -51.93 -0.40 0.73 16 32 H 0.04 1.09 8.11 -51.93 -0.42 0.67 16 33 H 0.06 1.50 6.82 -51.93 -0.35 1.15 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.15 2.53 8.14 -51.92 -0.42 2.10 16 36 H 0.13 1.82 8.14 -51.93 -0.42 1.39 16 37 H 0.09 1.21 7.64 -51.92 -0.40 0.82 16 38 H 0.10 1.36 7.64 -51.93 -0.40 0.96 16 39 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 41 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 375.77 15.07 5.66 5.66 Total: -1.00 -32.36 375.77 -9.28 -41.64 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.28 Total: 3.50 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: -2.63 Total: -25.21 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.42 Total: -44.98 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -1.93 Total: -42.82 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.07 Total: -3.34 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 50.53 SS G_CDS: -0.58 Total: 49.95 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.36 -9.28 -41.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599320028.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.927 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds