Wall clock time and date at job start Wed Apr 1 2020 03:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50696 * 120.00299 * 2 1 4 4 N 1.46505 * 109.47467 * 124.99402 * 3 2 1 5 5 C 1.46499 * 120.00237 * 275.00452 * 4 3 2 6 6 C 1.50696 * 109.46959 * 274.99766 * 5 4 3 7 7 H 1.08003 * 120.00115 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99971 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00043 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00061 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46768 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47088 * 119.99301 * 10 8 6 13 13 H 1.48502 * 109.46811 * 239.99607 * 10 8 6 14 14 S 1.65606 * 119.99870 * 94.99806 * 4 3 2 15 15 O 1.42105 * 104.27565 * 333.93387 * 14 4 3 16 16 O 1.42095 * 104.27795 * 206.07679 * 14 4 3 17 17 C 1.81401 * 104.44734 * 90.00101 * 14 4 3 18 18 C 1.52994 * 109.47083 * 179.97438 * 17 14 4 19 19 C 1.50701 * 109.47170 * 180.02562 * 18 17 14 20 20 C 1.38425 * 120.02136 * 90.00332 * 19 18 17 21 21 F 1.35101 * 120.01402 * 359.70506 * 20 19 18 22 22 C 1.38476 * 119.97328 * 179.97438 * 20 19 18 23 23 C 1.38207 * 120.02410 * 0.02562 * 22 20 19 24 24 C 1.38207 * 120.05360 * 359.97438 * 23 22 20 25 25 C 1.38412 * 120.02814 * 269.97965 * 19 18 17 26 26 F 1.35096 * 120.01191 * 0.02562 * 25 19 18 27 27 H 1.08000 * 120.00383 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.99811 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.99811 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.47372 * 4.99766 * 3 2 1 31 31 H 1.09002 * 109.47509 * 244.99422 * 3 2 1 32 32 H 1.09000 * 109.47118 * 34.99382 * 5 4 3 33 33 H 1.09003 * 109.47235 * 154.99641 * 5 4 3 34 34 H 0.96998 * 120.00116 * 180.02562 * 9 8 6 35 35 H 1.09008 * 109.46697 * 60.00271 * 17 14 4 36 36 H 1.08994 * 109.47368 * 300.00822 * 17 14 4 37 37 H 1.09008 * 109.46866 * 60.00700 * 18 17 14 38 38 H 1.09006 * 109.47655 * 300.00561 * 18 17 14 39 39 H 1.08001 * 119.98752 * 179.97438 * 22 20 19 40 40 H 1.08000 * 119.97200 * 180.02562 * 23 22 20 41 41 H 1.07995 * 119.99247 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5284 1.7621 2.4523 6 6 2.5991 3.2646 2.5449 7 1 2.9554 3.8413 1.7042 8 6 2.2098 3.9029 3.7034 9 7 1.7763 3.2006 4.7274 10 14 2.2967 5.7654 3.8180 11 1 2.8144 6.3163 2.5398 12 1 0.9396 6.3092 4.0783 13 1 3.2058 6.1512 4.9271 14 16 4.5713 0.8758 0.9175 15 8 4.5315 -0.0151 -0.1889 16 8 4.9847 0.4306 2.2020 17 6 5.4291 2.4099 0.4689 18 6 6.9136 2.1168 0.2428 19 6 7.6263 3.3914 -0.1293 20 6 8.1730 4.1928 0.8582 21 9 8.0626 3.8357 2.1564 22 6 8.8282 5.3635 0.5151 23 6 8.9360 5.7321 -0.8126 24 6 8.3906 4.9327 -1.7993 25 6 7.7353 3.7613 -1.4586 26 9 7.2023 2.9801 -2.4233 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3586 2.1317 0.0895 31 1 2.6214 1.4025 -0.9313 32 1 1.4982 1.4372 2.5982 33 1 3.1612 1.3205 3.2222 34 1 1.5021 3.6497 5.5423 35 1 5.3211 3.1356 1.2751 36 1 4.9950 2.8150 -0.4451 37 1 7.0219 1.3909 -0.5632 38 1 7.3475 1.7119 1.1572 39 1 9.2544 5.9892 1.2853 40 1 9.4475 6.6451 -1.0792 41 1 8.4750 5.2219 -2.8364 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599320028.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:20 Heat of formation + Delta-G solvation = -137.986226 kcal Electronic energy + Delta-G solvation = -28587.649484 eV Core-core repulsion = 24230.528146 eV Total energy + Delta-G solvation = -4357.121338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.07522 -50.06506 -39.94065 -38.25210 -37.93913 -37.00847 -35.65331 -35.01262 -33.55466 -31.29582 -30.83715 -29.35387 -26.56153 -25.84590 -24.13324 -23.90139 -22.55675 -21.00485 -19.81193 -19.19665 -18.64408 -18.48396 -18.40888 -17.68451 -17.49508 -16.92791 -16.73469 -16.63588 -16.49523 -16.35467 -16.01224 -15.47507 -15.37041 -15.08751 -14.78381 -14.57365 -14.25478 -14.08688 -13.78199 -13.77079 -13.42894 -13.23000 -13.05706 -13.03602 -12.97199 -12.92466 -12.63963 -12.49147 -12.41692 -12.34943 -12.27956 -11.94755 -11.72687 -11.54705 -10.60897 -10.32115 -10.00118 -9.78896 -9.73413 -8.18951 -6.34024 -0.73781 -0.07320 -0.06342 1.30667 1.40437 1.41808 1.52748 1.86414 2.32269 2.39954 2.81238 2.84661 3.12583 3.16204 3.33675 3.36440 3.51074 3.55180 3.86596 3.90022 3.94194 4.15463 4.18291 4.25325 4.38817 4.43483 4.68737 4.77304 4.81063 4.82471 4.93688 5.01009 5.04438 5.07592 5.17836 5.29961 5.43893 5.69610 5.74944 5.75364 5.78864 5.99787 6.07074 6.78957 7.36795 8.89497 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.009077 B = 0.004773 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.953810 B = 5864.683596 C = 7686.556244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.188 4.188 3 C 0.149 3.851 4 N -0.986 5.986 5 C 0.260 3.740 6 C -0.549 4.549 7 H 0.075 0.925 8 C 0.011 3.989 9 N -0.927 5.927 10 Si 0.957 3.043 11 H -0.257 1.257 12 H -0.277 1.277 13 H -0.283 1.283 14 S 2.612 3.388 15 O -0.978 6.978 16 O -0.995 6.995 17 C -0.608 4.608 18 C -0.078 4.078 19 C -0.163 4.163 20 C 0.105 3.895 21 F -0.143 7.143 22 C -0.158 4.158 23 C -0.050 4.050 24 C -0.153 4.153 25 C 0.115 3.885 26 F -0.136 7.136 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.021 0.979 33 H 0.019 0.981 34 H 0.266 0.734 35 H 0.135 0.865 36 H 0.152 0.848 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.165 0.835 40 H 0.187 0.813 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.412 6.417 -15.109 20.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.208 4.208 3 C 0.024 3.976 4 N -0.823 5.823 5 C 0.137 3.863 6 C -0.589 4.589 7 H 0.093 0.907 8 C -0.189 4.189 9 N -0.566 5.566 10 Si 0.782 3.218 11 H -0.181 1.181 12 H -0.203 1.203 13 H -0.209 1.209 14 S 2.708 3.292 15 O -0.969 6.969 16 O -0.985 6.985 17 C -0.739 4.739 18 C -0.117 4.117 19 C -0.166 4.166 20 C 0.086 3.914 21 F -0.122 7.122 22 C -0.177 4.177 23 C -0.067 4.067 24 C -0.171 4.171 25 C 0.096 3.904 26 F -0.114 7.114 27 H 0.131 0.869 28 H 0.124 0.876 29 H 0.118 0.882 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.075 0.925 35 H 0.153 0.847 36 H 0.170 0.830 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.183 0.817 40 H 0.204 0.796 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 12.623 5.486 -14.805 20.215 hybrid contribution -0.510 0.802 0.838 1.267 sum 12.114 6.289 -13.967 19.528 Atomic orbital electron populations 1.24019 0.95193 1.02922 0.98618 1.23410 0.97072 0.98780 1.01528 1.20443 0.93222 0.96155 0.87744 1.57263 1.25054 1.82965 1.16987 1.18739 0.95326 0.94184 0.78084 1.21935 1.44273 0.92569 1.00082 0.90689 1.25838 0.94604 1.03208 0.95213 1.70081 1.44160 1.37577 1.04781 0.85519 0.77931 0.79748 0.78623 1.18075 1.20307 1.20879 1.04656 0.74087 0.77279 0.73172 1.93515 1.86333 1.61833 1.55180 1.93518 1.82551 1.80684 1.41793 1.30538 1.06755 1.22961 1.13614 1.20220 0.90723 0.96311 1.04397 1.19649 1.04794 0.99263 0.92905 1.17682 1.00396 0.95832 0.77511 1.91528 1.94310 1.91900 1.34436 1.21613 1.01055 0.95169 0.99853 1.21368 0.95694 0.99875 0.89781 1.21618 0.99315 0.92741 1.03461 1.17465 0.97881 0.91539 0.83565 1.91513 1.84200 1.73964 1.61729 0.86856 0.87644 0.88236 0.89337 0.88498 0.96109 0.96269 0.92503 0.84657 0.83034 0.87796 0.89295 0.81747 0.79554 0.80940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.88 14.32 67.78 0.97 -3.91 16 2 C -0.19 -6.34 9.84 25.65 0.25 -6.08 16 3 C 0.15 5.23 5.69 85.63 0.49 5.71 16 4 N -0.99 -41.53 2.68 -523.90 -1.41 -42.94 16 5 C 0.26 13.45 5.41 85.63 0.46 13.91 16 6 C -0.55 -28.86 9.38 25.60 0.24 -28.62 16 7 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 8 C 0.01 0.61 5.46 84.65 0.46 1.07 16 9 N -0.93 -54.31 13.29 21.45 0.28 -54.02 16 10 Si 0.96 42.06 29.54 68.60 2.03 44.08 16 11 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 12 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 14 S 2.61 104.31 5.37 -56.49 -0.30 104.01 16 15 O -0.98 -39.14 16.99 -127.65 -2.17 -41.30 16 16 O -0.99 -48.21 16.53 -127.65 -2.11 -50.32 16 17 C -0.61 -19.74 6.16 71.98 0.44 -19.30 16 18 C -0.08 -2.28 5.00 29.85 0.15 -2.13 16 19 C -0.16 -4.21 5.15 -19.78 -0.10 -4.31 16 20 C 0.11 2.63 7.24 22.37 0.16 2.79 16 21 F -0.14 -4.37 16.48 44.97 0.74 -3.63 16 22 C -0.16 -2.64 10.03 22.32 0.22 -2.42 16 23 C -0.05 -0.56 10.04 22.25 0.22 -0.34 16 24 C -0.15 -2.15 10.03 22.32 0.22 -1.93 16 25 C 0.12 2.49 7.24 22.37 0.16 2.65 16 26 F -0.14 -3.19 16.48 44.97 0.74 -2.45 16 27 H 0.11 2.76 8.06 -2.91 -0.02 2.74 16 28 H 0.11 2.86 7.84 -2.91 -0.02 2.84 16 29 H 0.10 3.48 8.06 -2.91 -0.02 3.46 16 30 H 0.09 3.02 7.76 -2.38 -0.02 3.00 16 31 H 0.10 2.87 7.61 -2.39 -0.02 2.85 16 32 H 0.02 1.14 8.11 -2.39 -0.02 1.12 16 33 H 0.02 1.12 6.82 -2.39 -0.02 1.11 16 34 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 35 H 0.14 4.77 8.14 -2.39 -0.02 4.75 16 36 H 0.15 4.13 8.14 -2.39 -0.02 4.12 16 37 H 0.10 2.73 7.64 -2.38 -0.02 2.71 16 38 H 0.09 2.66 7.64 -2.38 -0.02 2.64 16 39 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 40 H 0.19 0.53 8.06 -2.91 -0.02 0.51 16 41 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -72.75 375.77 3.21 -69.54 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 1.04 Total: 19.93 kcal Atomic # 6 Polarization: -47.26 SS G_CDS: 4.36 Total: -42.90 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -1.12 Total: -96.96 kcal Atomic # 8 Polarization: -87.35 SS G_CDS: -4.28 Total: -91.63 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 1.48 Total: -6.07 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: 104.31 SS G_CDS: -0.30 Total: 104.01 kcal Total: -72.75 3.21 -69.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599320028.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.448 kcal (2) G-P(sol) polarization free energy of solvation -72.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds