Wall clock time and date at job start Wed Apr 1 2020 04:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99980 * 2 1 4 4 C 1.53003 * 109.46785 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47161 * 64.99916 * 4 3 2 6 6 C 1.46498 * 119.99874 * 274.99798 * 5 4 3 7 7 C 1.50703 * 109.46907 * 275.00275 * 6 5 4 8 8 H 1.08001 * 120.00049 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99988 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99970 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00266 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46821 * 0.02562 * 11 9 7 13 13 H 1.48491 * 109.47101 * 119.99857 * 11 9 7 14 14 H 1.48500 * 109.47126 * 240.00184 * 11 9 7 15 15 S 1.65595 * 119.99850 * 95.00088 * 5 4 3 16 16 O 1.42105 * 106.40149 * 203.53728 * 15 5 4 17 17 O 1.42098 * 106.40317 * 336.45602 * 15 5 4 18 18 C 1.76204 * 107.21987 * 89.99964 * 15 5 4 19 19 C 1.38146 * 120.00251 * 114.72445 * 18 15 5 20 20 C 1.38676 * 120.00131 * 179.77211 * 19 18 15 21 21 O 1.35981 * 120.00450 * 180.25001 * 20 19 18 22 22 C 1.42900 * 117.00374 * 180.27267 * 21 20 19 23 23 C 1.38726 * 119.99620 * 0.52157 * 20 19 18 24 24 C 1.38106 * 120.00327 * 359.72919 * 23 20 19 25 25 C 1.38681 * 119.99342 * 294.99603 * 18 15 5 26 26 O 1.35975 * 120.00417 * 359.97438 * 25 18 15 27 27 H 1.09003 * 109.47661 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47311 * 300.00145 * 1 2 3 29 29 H 1.09001 * 109.47292 * 60.00460 * 1 2 3 30 30 H 1.08993 * 109.47214 * 59.99836 * 3 2 1 31 31 H 1.08998 * 109.47000 * 299.99858 * 3 2 1 32 32 H 1.08996 * 109.46879 * 304.99255 * 4 3 2 33 33 H 1.09003 * 109.46581 * 184.99901 * 4 3 2 34 34 H 1.09001 * 109.47378 * 34.99890 * 6 5 4 35 35 H 1.09002 * 109.46925 * 155.00631 * 6 5 4 36 36 H 0.97003 * 120.00349 * 180.02562 * 10 9 7 37 37 H 1.07996 * 120.00165 * 359.97438 * 19 18 15 38 38 H 1.09000 * 109.46877 * 300.00122 * 22 21 20 39 39 H 1.08995 * 109.47121 * 59.99813 * 22 21 20 40 40 H 1.08998 * 109.47460 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.99562 * 179.70681 * 23 20 19 42 42 H 1.07991 * 120.00532 * 179.97438 * 24 23 20 43 43 H 0.96705 * 113.99506 * 89.99888 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5643 -1.2527 6 6 4.0003 -0.8951 -1.3781 7 6 5.2993 -1.4247 -0.8274 8 1 6.0332 -0.7423 -0.4247 9 6 5.5512 -2.7802 -0.8385 10 7 4.6581 -3.6110 -1.3303 11 14 7.1616 -3.4367 -0.1566 12 1 7.9896 -2.3052 0.3330 13 1 6.8811 -4.3664 0.9668 14 1 7.8941 -4.1601 -1.2268 15 16 4.4454 1.5128 -2.5262 16 8 4.2757 0.7255 -3.6970 17 8 3.8177 2.7740 -2.3401 18 6 6.1775 1.7896 -2.3595 19 6 7.0518 1.2831 -3.3016 20 6 8.4147 1.5050 -3.1729 21 8 9.2748 1.0108 -4.1030 22 6 10.6656 1.2723 -3.9042 23 6 8.9009 2.2262 -2.0922 24 6 8.0274 2.7281 -1.1476 25 6 6.6635 2.5110 -1.2794 26 8 5.8034 3.0052 -0.3494 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8514 0.5682 0.8410 33 1 3.9785 2.1765 0.0889 34 1 3.1677 -1.3220 -0.8189 35 1 3.9118 -1.1710 -2.4289 36 1 4.8351 -4.5647 -1.3378 37 1 6.6737 0.7173 -4.1401 38 1 10.8347 2.3490 -3.8917 39 1 10.9837 0.8435 -2.9540 40 1 11.2392 0.8234 -4.7151 41 1 9.9627 2.3949 -1.9895 42 1 8.4059 3.2892 -0.3061 43 1 5.6288 2.4010 0.3852 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601336820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:10 Heat of formation + Delta-G solvation = -155.679534 kcal Electronic energy + Delta-G solvation = -30141.649602 eV Core-core repulsion = 25894.848541 eV Total energy + Delta-G solvation = -4246.801062 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.117 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.23929 -38.58364 -37.70729 -36.63713 -35.84716 -35.30389 -35.14719 -32.55439 -31.32713 -29.57154 -29.23731 -27.16666 -26.75216 -25.63819 -23.30018 -22.81232 -22.36796 -21.74069 -19.07836 -18.48367 -17.69222 -17.02021 -16.60452 -16.49069 -15.96829 -15.82446 -15.72291 -15.54397 -15.33029 -15.02491 -14.56223 -14.41524 -14.12675 -13.82955 -13.51064 -13.01863 -12.75430 -12.60627 -12.46481 -12.28129 -11.99387 -11.92987 -11.63483 -11.49054 -11.40843 -11.21202 -11.18863 -11.07276 -11.02791 -10.87581 -10.57873 -10.34063 -10.16944 -10.03014 -9.73566 -9.30655 -9.25154 -8.42125 -8.10236 -7.98210 -6.04580 -4.10120 0.81104 1.12614 1.33289 3.21839 3.26115 3.33423 3.34888 3.37765 3.70116 4.04111 4.28552 4.33830 4.40910 4.67604 4.84859 4.90997 5.01389 5.04430 5.30135 5.34214 5.38661 5.41223 5.45921 5.51719 5.57385 5.67901 5.72558 5.79792 5.91314 5.95588 5.98163 6.16411 6.23744 6.27688 6.42582 6.51454 7.28529 7.46564 7.53947 7.56245 7.58076 7.77794 7.93784 8.22277 8.93375 9.54593 11.03473 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.009385 B = 0.005806 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.698356 B = 4821.388402 C = 6597.273529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.045 3.955 4 C 0.120 3.880 5 N -0.972 5.972 6 C 0.243 3.757 7 C -0.538 4.538 8 H 0.057 0.943 9 C 0.067 3.933 10 N -0.885 5.885 11 Si 0.888 3.112 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.283 1.283 15 S 2.689 3.311 16 O -0.954 6.954 17 O -0.964 6.964 18 C -0.646 4.646 19 C -0.026 4.026 20 C 0.098 3.902 21 O -0.312 6.312 22 C 0.026 3.974 23 C -0.148 4.148 24 C -0.127 4.127 25 C 0.166 3.834 26 O -0.492 6.492 27 H 0.083 0.917 28 H 0.034 0.966 29 H 0.036 0.964 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.263 0.737 37 H 0.155 0.845 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.100 0.900 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.777 11.565 2.207 12.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C -0.034 4.034 4 C -0.007 4.007 5 N -0.812 5.812 6 C 0.122 3.878 7 C -0.578 4.578 8 H 0.076 0.924 9 C -0.136 4.136 10 N -0.524 5.524 11 Si 0.716 3.284 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.209 1.209 15 S 2.777 3.223 16 O -0.945 6.945 17 O -0.954 6.954 18 C -0.730 4.730 19 C -0.045 4.045 20 C 0.052 3.948 21 O -0.226 6.226 22 C -0.069 4.069 23 C -0.167 4.167 24 C -0.146 4.146 25 C 0.120 3.880 26 O -0.305 6.305 27 H 0.102 0.898 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.173 0.827 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.119 0.881 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 4.308 11.878 0.986 12.673 hybrid contribution 1.784 -0.668 1.298 2.306 sum 6.093 11.210 2.284 12.962 Atomic orbital electron populations 1.22703 0.82312 1.02458 0.99149 1.88097 1.18484 1.27040 1.95175 1.23059 0.94988 0.85213 1.00154 1.21435 0.92185 0.98282 0.88788 1.57368 1.77599 1.19291 1.26929 1.19386 0.98191 0.70959 0.99311 1.21555 1.02743 0.92191 1.41308 0.92448 1.24887 0.96569 0.96890 0.95266 1.69944 1.34243 1.03127 1.45058 0.86605 0.83985 0.78999 0.78787 1.19969 1.20948 1.20915 1.02143 0.73413 0.72893 0.73897 1.93553 1.84950 1.69972 1.46007 1.93545 1.73264 1.42340 1.86219 1.31457 1.28478 1.09324 1.03713 1.20076 0.89547 0.96244 0.98663 1.18998 0.90287 0.95808 0.89716 1.86134 1.17087 1.73219 1.46134 1.23068 0.79647 1.01096 1.03108 1.21286 1.00366 1.00157 0.94907 1.21169 0.92043 1.01340 1.00084 1.17620 0.88626 0.92726 0.89004 1.84968 1.63953 1.45617 1.35999 0.89850 0.94781 0.94559 0.92956 0.93018 0.88897 0.89012 0.91942 0.93259 0.92739 0.82707 0.92780 0.92618 0.88120 0.84714 0.84564 0.74622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.62 9.02 -35.23 -0.32 -6.94 16 3 C 0.04 0.70 6.28 37.16 0.23 0.94 16 4 C 0.12 1.96 5.05 -4.04 -0.02 1.94 16 5 N -0.97 -19.82 2.75 -115.66 -0.32 -20.14 16 6 C 0.24 6.04 5.27 -5.19 -0.03 6.01 16 7 C -0.54 -14.10 9.38 -34.44 -0.32 -14.43 16 8 H 0.06 1.44 7.81 -52.49 -0.41 1.03 16 9 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 10 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 11 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 15 S 2.69 55.41 5.24 -107.50 -0.56 54.85 16 16 O -0.95 -22.46 15.52 -57.17 -0.89 -23.34 16 17 O -0.96 -20.01 16.26 -62.54 -1.02 -21.03 16 18 C -0.65 -12.21 5.92 -39.45 -0.23 -12.44 16 19 C -0.03 -0.48 9.48 -39.45 -0.37 -0.85 16 20 C 0.10 1.59 6.69 -39.24 -0.26 1.32 16 21 O -0.31 -4.64 10.50 -19.68 -0.21 -4.85 16 22 C 0.03 0.25 9.81 101.05 0.99 1.24 16 23 C -0.15 -2.03 9.03 -39.45 -0.36 -2.39 16 24 C -0.13 -1.79 9.98 -39.45 -0.39 -2.18 16 25 C 0.17 2.74 6.65 -39.24 -0.26 2.48 16 26 O -0.49 -7.22 10.61 -29.57 -0.31 -7.54 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 1.48 8.11 -51.93 -0.42 1.06 16 33 H 0.09 1.27 4.33 -51.93 -0.22 1.04 16 34 H 0.06 1.64 6.60 -51.93 -0.34 1.30 16 35 H 0.05 1.36 6.91 -51.93 -0.36 1.00 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.16 2.93 7.33 -52.49 -0.38 2.54 16 38 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 39 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.14 1.36 6.29 -52.49 -0.33 1.02 16 42 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 43 H 0.39 4.44 6.98 45.56 0.32 4.76 16 LS Contribution 368.98 15.07 5.56 5.56 Total: -1.00 -34.99 368.98 -7.41 -42.39 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.04 Total: 4.94 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -0.01 Total: -15.08 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.42 Total: -44.93 kcal Atomic # 8 Polarization: -60.95 SS G_CDS: -2.74 Total: -63.69 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 55.41 SS G_CDS: -0.56 Total: 54.85 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.99 -7.41 -42.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601336820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.286 kcal (2) G-P(sol) polarization free energy of solvation -34.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds