Wall clock time and date at job start Wed Apr 1 2020 04:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99980 * 2 1 4 4 C 1.53003 * 109.46785 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47161 * 64.99916 * 4 3 2 6 6 C 1.46498 * 119.99874 * 274.99798 * 5 4 3 7 7 C 1.50703 * 109.46907 * 275.00275 * 6 5 4 8 8 H 1.08001 * 120.00049 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99988 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99970 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00266 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46821 * 0.02562 * 11 9 7 13 13 H 1.48491 * 109.47101 * 119.99857 * 11 9 7 14 14 H 1.48500 * 109.47126 * 240.00184 * 11 9 7 15 15 S 1.65595 * 119.99850 * 95.00088 * 5 4 3 16 16 O 1.42105 * 106.40149 * 203.53728 * 15 5 4 17 17 O 1.42098 * 106.40317 * 336.45602 * 15 5 4 18 18 C 1.76204 * 107.21987 * 89.99964 * 15 5 4 19 19 C 1.38146 * 120.00251 * 114.72445 * 18 15 5 20 20 C 1.38676 * 120.00131 * 179.77211 * 19 18 15 21 21 O 1.35981 * 120.00450 * 180.25001 * 20 19 18 22 22 C 1.42900 * 117.00374 * 180.27267 * 21 20 19 23 23 C 1.38726 * 119.99620 * 0.52157 * 20 19 18 24 24 C 1.38106 * 120.00327 * 359.72919 * 23 20 19 25 25 C 1.38681 * 119.99342 * 294.99603 * 18 15 5 26 26 O 1.35975 * 120.00417 * 359.97438 * 25 18 15 27 27 H 1.09003 * 109.47661 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47311 * 300.00145 * 1 2 3 29 29 H 1.09001 * 109.47292 * 60.00460 * 1 2 3 30 30 H 1.08993 * 109.47214 * 59.99836 * 3 2 1 31 31 H 1.08998 * 109.47000 * 299.99858 * 3 2 1 32 32 H 1.08996 * 109.46879 * 304.99255 * 4 3 2 33 33 H 1.09003 * 109.46581 * 184.99901 * 4 3 2 34 34 H 1.09001 * 109.47378 * 34.99890 * 6 5 4 35 35 H 1.09002 * 109.46925 * 155.00631 * 6 5 4 36 36 H 0.97003 * 120.00349 * 180.02562 * 10 9 7 37 37 H 1.07996 * 120.00165 * 359.97438 * 19 18 15 38 38 H 1.09000 * 109.46877 * 300.00122 * 22 21 20 39 39 H 1.08995 * 109.47121 * 59.99813 * 22 21 20 40 40 H 1.08998 * 109.47460 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.99562 * 179.70681 * 23 20 19 42 42 H 1.07991 * 120.00532 * 179.97438 * 24 23 20 43 43 H 0.96705 * 113.99506 * 89.99888 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5643 -1.2527 6 6 4.0003 -0.8951 -1.3781 7 6 5.2993 -1.4247 -0.8274 8 1 6.0332 -0.7423 -0.4247 9 6 5.5512 -2.7802 -0.8385 10 7 4.6581 -3.6110 -1.3303 11 14 7.1616 -3.4367 -0.1566 12 1 7.9896 -2.3052 0.3330 13 1 6.8811 -4.3664 0.9668 14 1 7.8941 -4.1601 -1.2268 15 16 4.4454 1.5128 -2.5262 16 8 4.2757 0.7255 -3.6970 17 8 3.8177 2.7740 -2.3401 18 6 6.1775 1.7896 -2.3595 19 6 7.0518 1.2831 -3.3016 20 6 8.4147 1.5050 -3.1729 21 8 9.2748 1.0108 -4.1030 22 6 10.6656 1.2723 -3.9042 23 6 8.9009 2.2262 -2.0922 24 6 8.0274 2.7281 -1.1476 25 6 6.6635 2.5110 -1.2794 26 8 5.8034 3.0052 -0.3494 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8514 0.5682 0.8410 33 1 3.9785 2.1765 0.0889 34 1 3.1677 -1.3220 -0.8189 35 1 3.9118 -1.1710 -2.4289 36 1 4.8351 -4.5647 -1.3378 37 1 6.6737 0.7173 -4.1401 38 1 10.8347 2.3490 -3.8917 39 1 10.9837 0.8435 -2.9540 40 1 11.2392 0.8234 -4.7151 41 1 9.9627 2.3949 -1.9895 42 1 8.4059 3.2892 -0.3061 43 1 5.6288 2.4010 0.3852 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601336820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:09 Heat of formation + Delta-G solvation = -183.630656 kcal Electronic energy + Delta-G solvation = -30142.861654 eV Core-core repulsion = 25894.848541 eV Total energy + Delta-G solvation = -4248.013113 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.117 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.37892 -39.72415 -39.01594 -38.27903 -37.14163 -36.93266 -36.72704 -34.53646 -32.52442 -31.06909 -30.40139 -28.47427 -28.04359 -26.96838 -24.77960 -24.28806 -23.61423 -23.25707 -20.36726 -19.79563 -19.07248 -18.60232 -18.35915 -17.86371 -17.33085 -17.14505 -17.01190 -16.78578 -16.49175 -16.44462 -16.27510 -15.73270 -15.29656 -15.11293 -14.96292 -14.48462 -14.13093 -13.95172 -13.67702 -13.51683 -13.47035 -13.36331 -13.24067 -13.13489 -12.94509 -12.78044 -12.69900 -12.49451 -12.37418 -12.23452 -12.05742 -11.95330 -11.75044 -11.63994 -11.40478 -10.57668 -10.52396 -10.45131 -9.74198 -9.22572 -8.12092 -6.24742 -0.60386 -0.31367 0.14020 1.40431 1.41811 1.52218 1.96886 2.21552 2.34418 2.44813 2.71599 2.92087 3.11701 3.20763 3.38654 3.64581 3.87012 4.00201 4.11493 4.21268 4.28714 4.38365 4.39339 4.45129 4.53473 4.58606 4.62541 4.66123 4.71792 4.74339 4.87387 4.92420 5.00723 5.05963 5.08601 5.34641 5.45568 5.61659 5.78206 5.96372 6.15656 6.26854 6.42545 6.50430 6.87082 7.43855 8.96513 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.009385 B = 0.005806 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.698356 B = 4821.388402 C = 6597.273529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.040 3.960 4 C 0.111 3.889 5 N -0.974 5.974 6 C 0.264 3.736 7 C -0.538 4.538 8 H 0.070 0.930 9 C 0.010 3.990 10 N -0.927 5.927 11 Si 0.954 3.046 12 H -0.258 1.258 13 H -0.278 1.278 14 H -0.287 1.287 15 S 2.695 3.305 16 O -0.999 6.999 17 O -0.970 6.970 18 C -0.665 4.665 19 C -0.064 4.064 20 C 0.093 3.907 21 O -0.336 6.336 22 C 0.012 3.988 23 C -0.132 4.132 24 C -0.117 4.117 25 C 0.159 3.841 26 O -0.493 6.493 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.092 0.908 31 H 0.040 0.960 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.044 0.956 35 H 0.008 0.992 36 H 0.263 0.737 37 H 0.130 0.870 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.119 0.881 41 H 0.181 0.819 42 H 0.179 0.821 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.773 13.507 4.747 16.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C -0.039 4.039 4 C -0.014 4.014 5 N -0.813 5.813 6 C 0.140 3.860 7 C -0.577 4.577 8 H 0.088 0.912 9 C -0.189 4.189 10 N -0.567 5.567 11 Si 0.779 3.221 12 H -0.182 1.182 13 H -0.203 1.203 14 H -0.213 1.213 15 S 2.787 3.213 16 O -0.990 6.990 17 O -0.960 6.960 18 C -0.753 4.753 19 C -0.084 4.084 20 C 0.047 3.953 21 O -0.251 6.251 22 C -0.082 4.082 23 C -0.151 4.151 24 C -0.136 4.136 25 C 0.112 3.888 26 O -0.309 6.309 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.110 0.890 31 H 0.058 0.942 32 H 0.118 0.882 33 H 0.138 0.862 34 H 0.062 0.938 35 H 0.026 0.974 36 H 0.072 0.928 37 H 0.148 0.852 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.137 0.863 41 H 0.198 0.802 42 H 0.197 0.803 43 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 7.256 13.842 3.548 16.026 hybrid contribution 0.909 -1.180 0.481 1.565 sum 8.165 12.661 4.029 15.595 Atomic orbital electron populations 1.22882 0.80494 1.03135 1.00664 1.88041 1.20719 1.28453 1.95471 1.23180 0.94406 0.84794 1.01475 1.21801 0.93123 0.99442 0.87063 1.57157 1.78486 1.17316 1.28368 1.18818 0.97334 0.73502 0.96318 1.21868 1.03098 0.92443 1.40304 0.91221 1.25772 0.99979 0.97395 0.95761 1.70088 1.36459 1.03401 1.46754 0.85572 0.79877 0.78699 0.77954 1.18158 1.20322 1.21321 1.01555 0.74305 0.72361 0.73113 1.93490 1.86199 1.70968 1.48325 1.93518 1.74339 1.42015 1.86163 1.30997 1.26499 1.11985 1.05806 1.20029 0.91505 0.98034 0.98850 1.19067 0.89522 0.95984 0.90766 1.86116 1.19385 1.73347 1.46217 1.23483 0.76917 1.03064 1.04699 1.21800 1.02645 0.97691 0.92942 1.21648 0.90614 1.00309 1.00999 1.17844 0.90082 0.92306 0.88529 1.84925 1.63919 1.45871 1.36182 0.89741 0.91954 0.94246 0.88972 0.94167 0.88226 0.86207 0.93829 0.97370 0.92761 0.85167 0.90467 0.91326 0.86274 0.80210 0.80343 0.72921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 11.01 113.37 1.25 1.92 16 2 O -0.41 -14.79 9.02 -148.98 -1.34 -16.14 16 3 C 0.04 1.22 6.28 71.98 0.45 1.68 16 4 C 0.11 3.56 5.05 86.38 0.44 3.99 16 5 N -0.97 -40.86 2.75 -519.84 -1.43 -42.29 16 6 C 0.26 13.75 5.27 85.63 0.45 14.20 16 7 C -0.54 -28.63 9.38 25.60 0.24 -28.39 16 8 H 0.07 3.46 7.81 -2.91 -0.02 3.43 16 9 C 0.01 0.56 5.46 84.66 0.46 1.02 16 10 N -0.93 -55.26 13.29 21.45 0.28 -54.98 16 11 Si 0.95 42.88 29.54 68.60 2.03 44.91 16 12 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 13 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 14 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 15 S 2.69 115.75 5.24 -56.49 -0.30 115.45 16 16 O -1.00 -50.90 15.52 -128.00 -1.99 -52.89 16 17 O -0.97 -40.99 16.26 -122.87 -2.00 -42.99 16 18 C -0.66 -25.31 5.92 22.35 0.13 -25.18 16 19 C -0.06 -2.47 9.48 22.35 0.21 -2.25 16 20 C 0.09 2.88 6.69 22.49 0.15 3.03 16 21 O -0.34 -9.54 10.50 -93.34 -0.98 -10.52 16 22 C 0.01 0.19 9.81 113.37 1.11 1.31 16 23 C -0.13 -3.06 9.03 22.36 0.20 -2.86 16 24 C -0.12 -2.77 9.98 22.36 0.22 -2.54 16 25 C 0.16 4.89 6.65 22.49 0.15 5.04 16 26 O -0.49 -13.15 10.61 -83.79 -0.89 -14.04 16 27 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.10 3.06 8.11 -2.39 -0.02 3.04 16 33 H 0.12 3.10 4.33 -2.39 -0.01 3.09 16 34 H 0.04 2.42 6.60 -2.39 -0.02 2.41 16 35 H 0.01 0.49 6.91 -2.39 -0.02 0.48 16 36 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 37 H 0.13 5.43 7.33 -2.91 -0.02 5.41 16 38 H 0.08 0.87 7.66 -2.39 -0.02 0.85 16 39 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 40 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.18 2.48 6.29 -2.91 -0.02 2.46 16 42 H 0.18 2.72 8.06 -2.92 -0.02 2.70 16 43 H 0.41 7.99 6.98 -74.05 -0.52 7.47 16 Total: -1.00 -80.17 368.98 -0.61 -80.78 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.53 Total: 21.76 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 5.47 Total: -29.04 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -1.15 Total: -97.27 kcal Atomic # 8 Polarization: -129.38 SS G_CDS: -7.20 Total: -136.58 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 115.75 SS G_CDS: -0.30 Total: 115.45 kcal Total: -80.17 -0.61 -80.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601336820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.854 kcal (2) G-P(sol) polarization free energy of solvation -80.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds