Wall clock time and date at job start Wed Apr 1 2020 03:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.52870 * 2 1 4 4 C 1.53195 * 109.49327 * 239.91892 * 2 1 3 5 5 N 1.46928 * 108.77622 * 185.41383 * 4 2 1 6 6 S 1.65593 * 120.63355 * 233.63604 * 5 4 2 7 7 O 1.42100 * 106.40509 * 30.01521 * 6 5 4 8 8 O 1.42097 * 106.40616 * 162.93693 * 6 5 4 9 9 C 1.76198 * 107.21900 * 276.47739 * 6 5 4 10 10 C 1.37640 * 120.13176 * 116.27240 * 9 6 5 11 11 C 1.38617 * 120.24719 * 179.97438 * 10 9 6 12 12 C 1.38651 * 120.50303 * 0.02562 * 11 10 9 13 13 C 1.37594 * 120.25060 * 359.97322 * 12 11 10 14 14 C 1.40705 * 120.12434 * 296.00252 * 9 6 5 15 15 C 1.41397 * 120.24310 * 359.97438 * 14 9 6 16 16 H 1.07999 * 119.99954 * 332.33736 * 15 14 9 17 17 C 1.39949 * 119.99536 * 152.33423 * 15 14 9 18 18 N 1.30824 * 119.99542 * 162.43125 * 17 15 14 19 19 Si 1.86795 * 120.00142 * 342.43492 * 17 15 14 20 20 H 1.48501 * 109.47308 * 95.21624 * 19 17 15 21 21 H 1.48502 * 109.47071 * 215.21355 * 19 17 15 22 22 H 1.48504 * 109.47121 * 335.21072 * 19 17 15 23 23 C 1.46929 * 118.73843 * 53.60730 * 5 4 2 24 24 C 1.53192 * 108.89326 * 306.32523 * 23 5 4 25 25 C 1.53038 * 109.49670 * 120.08769 * 2 1 3 26 26 F 1.39901 * 109.46118 * 301.32926 * 25 2 1 27 27 F 1.39897 * 109.46456 * 61.30606 * 25 2 1 28 28 H 1.08997 * 109.47388 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46655 * 300.07953 * 1 2 3 30 30 H 1.09003 * 109.47096 * 60.07600 * 1 2 3 31 31 H 1.09001 * 109.58392 * 65.63267 * 4 2 1 32 32 H 1.08998 * 109.70779 * 305.27288 * 4 2 1 33 33 H 1.07996 * 119.87225 * 0.02562 * 10 9 6 34 34 H 1.08001 * 119.74219 * 180.02562 * 11 10 9 35 35 H 1.08001 * 119.87524 * 179.97438 * 12 11 10 36 36 H 1.07996 * 120.12889 * 180.02562 * 13 12 11 37 37 H 0.97000 * 119.99749 * 179.97438 * 18 17 15 38 38 H 1.09004 * 109.58107 * 66.17827 * 23 5 4 39 39 H 1.08996 * 109.59083 * 186.46253 * 23 5 4 40 40 H 1.09006 * 109.49557 * 174.65527 * 24 23 5 41 41 H 1.09001 * 109.49750 * 294.74818 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2496 5 7 3.5045 -0.8292 -1.1697 6 16 4.4586 -0.2842 -2.4086 7 8 3.7548 0.7916 -3.0139 8 8 5.7702 -0.1538 -1.8776 9 6 4.5347 -1.5687 -3.6123 10 6 4.0146 -1.3680 -4.8707 11 6 4.0736 -2.3767 -5.8197 12 6 4.6553 -3.5976 -5.5139 13 6 5.1817 -3.8204 -4.2623 14 6 5.1325 -2.8017 -3.2925 15 6 5.6757 -3.0171 -2.0049 16 1 6.0450 -2.1821 -1.4280 17 6 5.7347 -4.3123 -1.4782 18 7 6.5253 -4.5725 -0.4689 19 14 4.6848 -5.6695 -2.2163 20 1 5.4831 -6.4256 -3.2144 21 1 4.2376 -6.5901 -1.1403 22 1 3.4988 -5.0719 -2.8810 23 6 4.1053 -1.4268 0.0306 24 6 3.5740 -0.6959 1.2676 25 6 2.0408 -0.7232 1.2482 26 9 1.5498 -0.0833 2.3914 27 9 1.5994 -2.0506 1.2313 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5151 0.8893 30 1 -0.3633 0.5127 -0.8907 31 1 1.7637 -0.1579 -2.1389 32 1 1.6053 -1.7215 -1.3007 33 1 3.5595 -0.4208 -5.1199 34 1 3.6632 -2.2103 -6.8048 35 1 4.6954 -4.3765 -6.2609 36 1 5.6347 -4.7720 -4.0263 37 1 6.5660 -5.4701 -0.1035 38 1 3.8374 -2.4820 0.0865 39 1 5.1897 -1.3270 -0.0151 40 1 3.9387 -1.1912 2.1675 41 1 3.9192 0.3380 1.2556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601416722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:30 Heat of formation + Delta-G solvation = -160.993452 kcal Electronic energy + Delta-G solvation = -30409.817650 eV Core-core repulsion = 26051.698644 eV Total energy + Delta-G solvation = -4358.119006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -48.83959 -46.79700 -37.98179 -37.81284 -36.54643 -35.04785 -33.99259 -33.16609 -31.29379 -30.77345 -30.16552 -26.76715 -25.46903 -24.11020 -22.48561 -22.11882 -21.26284 -20.29159 -18.37880 -17.81888 -17.59055 -17.05823 -16.49400 -16.42970 -15.93957 -15.66006 -15.40318 -14.52142 -14.36310 -14.15281 -13.88360 -13.59913 -13.50923 -13.27177 -13.13699 -12.96774 -12.91999 -12.61701 -12.42017 -12.27240 -12.11128 -11.93683 -11.88864 -11.57025 -11.38977 -11.36101 -11.16628 -11.11419 -11.00692 -10.82855 -10.65113 -10.37867 -10.13635 -10.03964 -9.53418 -9.37976 -8.65663 -8.29094 -7.91926 -7.30320 -4.96784 1.28143 2.02203 2.47120 2.88893 3.00173 3.09401 3.57492 3.70087 3.86836 4.15874 4.18536 4.40754 4.44538 4.61176 4.83858 5.00165 5.18015 5.20399 5.29557 5.32812 5.54448 5.59964 5.70273 5.77714 5.79800 5.83639 5.84842 5.93915 6.01818 6.15093 6.15897 6.32289 6.40932 6.45272 6.56416 6.86496 6.96539 7.04199 7.22011 7.36459 7.50335 7.75937 8.02549 8.23557 8.43794 9.66479 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.011853 B = 0.005967 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.643800 B = 4691.284428 C = 5689.120314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.140 4.140 3 H 0.104 0.896 4 C 0.129 3.871 5 N -0.997 5.997 6 S 2.704 3.296 7 O -0.991 6.991 8 O -0.964 6.964 9 C -0.774 4.774 10 C 0.018 3.982 11 C -0.260 4.260 12 C -0.043 4.043 13 C -0.236 4.236 14 C 0.164 3.836 15 C -0.455 4.455 16 H 0.128 0.872 17 C 0.091 3.909 18 N -0.771 5.771 19 Si 0.907 3.093 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.239 1.239 23 C 0.128 3.872 24 C -0.172 4.172 25 C 0.294 3.706 26 F -0.206 7.206 27 F -0.196 7.196 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.293 0.707 38 H 0.082 0.918 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.510 3.079 2.457 9.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 H 0.122 0.878 4 C 0.003 3.997 5 N -0.832 5.832 6 S 2.803 3.197 7 O -0.982 6.982 8 O -0.955 6.955 9 C -0.868 4.868 10 C -0.002 4.002 11 C -0.280 4.280 12 C -0.061 4.061 13 C -0.255 4.255 14 C 0.159 3.841 15 C -0.481 4.481 16 H 0.145 0.855 17 C -0.134 4.134 18 N -0.392 5.392 19 Si 0.733 3.267 20 H -0.193 1.193 21 H -0.212 1.212 22 H -0.162 1.162 23 C 0.003 3.997 24 C -0.212 4.212 25 C 0.257 3.743 26 F -0.187 7.187 27 F -0.177 7.177 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.131 0.869 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.136 0.864 40 H 0.116 0.884 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.970 3.766 2.728 9.228 hybrid contribution -0.505 -1.657 -0.449 1.789 sum -8.475 2.110 2.279 9.026 Atomic orbital electron populations 1.21783 0.92815 1.03208 1.03048 1.22469 0.98067 1.01596 0.93970 0.87803 1.21346 0.80008 1.01141 0.97192 1.57731 1.15062 1.78064 1.32300 1.01059 0.72648 0.73385 0.72568 1.93446 1.74782 1.52606 1.77367 1.93506 1.36609 1.86472 1.78908 1.29823 1.25669 1.18409 1.12914 1.20377 0.91293 0.96951 0.91577 1.20488 1.12657 0.95463 0.99442 1.20826 0.93911 0.95877 0.95524 1.21184 1.09388 1.00203 0.94773 1.17050 0.85323 0.89229 0.92475 1.20406 1.31329 0.96441 0.99949 0.85461 1.26236 0.93419 0.99813 0.93930 1.69668 1.26468 1.23868 1.19155 0.86388 0.82299 0.79475 0.78547 1.19341 1.21243 1.16246 1.21515 1.00137 0.97248 0.80794 1.23038 0.91420 1.04743 1.02022 1.21134 0.93740 0.75807 0.83587 1.92970 1.89837 1.81985 1.53875 1.92984 1.91137 1.36812 1.96751 0.91586 0.91676 0.91040 0.88117 0.90464 0.86908 0.88108 0.88298 0.87717 0.89602 0.89927 0.86428 0.88437 0.88688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.95 37.16 0.33 -1.28 16 2 C -0.14 -1.80 2.53 -90.50 -0.23 -2.03 16 3 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 4 C 0.13 1.90 5.53 -3.71 -0.02 1.88 16 5 N -1.00 -17.43 3.24 -113.52 -0.37 -17.79 16 6 S 2.70 55.68 5.10 -107.50 -0.55 55.13 16 7 O -0.99 -20.68 15.76 -57.17 -0.90 -21.58 16 8 O -0.96 -22.33 14.45 -57.17 -0.83 -23.15 16 9 C -0.77 -17.22 5.96 -38.87 -0.23 -17.45 16 10 C 0.02 0.37 9.53 -39.66 -0.38 -0.01 16 11 C -0.26 -5.16 10.05 -39.29 -0.39 -5.55 16 12 C -0.04 -0.87 10.02 -39.66 -0.40 -1.27 16 13 C -0.24 -5.33 7.11 -38.87 -0.28 -5.60 16 14 C 0.16 3.89 5.17 -106.82 -0.55 3.34 16 15 C -0.45 -10.94 7.33 -37.74 -0.28 -11.22 16 16 H 0.13 3.19 3.94 -52.49 -0.21 2.98 16 17 C 0.09 2.09 5.43 -17.34 -0.09 2.00 16 18 N -0.77 -17.90 13.93 55.55 0.77 -17.12 16 19 Si 0.91 18.68 24.43 -169.99 -4.15 14.52 16 20 H -0.27 -5.39 6.68 56.52 0.38 -5.01 16 21 H -0.29 -5.67 7.11 56.52 0.40 -5.26 16 22 H -0.24 -5.06 6.75 56.52 0.38 -4.68 16 23 C 0.13 2.20 4.63 -3.71 -0.02 2.18 16 24 C -0.17 -2.43 5.65 -26.45 -0.15 -2.58 16 25 C 0.29 4.11 1.63 -26.53 -0.04 4.07 16 26 F -0.21 -2.89 16.50 2.25 0.04 -2.86 16 27 F -0.20 -3.02 15.64 2.25 0.04 -2.98 16 28 H 0.07 0.71 7.83 -51.93 -0.41 0.30 16 29 H 0.06 0.66 7.78 -51.93 -0.40 0.26 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.10 1.40 7.08 -51.93 -0.37 1.04 16 32 H 0.08 1.10 7.93 -51.93 -0.41 0.69 16 33 H 0.11 2.12 7.33 -52.49 -0.38 1.74 16 34 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.11 2.31 4.35 -52.49 -0.23 2.08 16 37 H 0.29 6.13 8.30 -40.82 -0.34 5.79 16 38 H 0.08 1.47 7.86 -51.93 -0.41 1.07 16 39 H 0.12 2.21 5.39 -51.93 -0.28 1.93 16 40 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 335.59 15.07 5.06 5.06 Total: -1.00 -27.69 335.59 -8.43 -36.13 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -4.81 Total: 8.16 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: -2.73 Total: -33.51 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.41 Total: -34.92 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -1.73 Total: -44.74 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.07 Total: -5.84 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -4.15 Total: 14.52 kcal Atomic # 16 Polarization: 55.68 SS G_CDS: -0.55 Total: 55.13 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.69 -8.43 -36.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601416722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.866 kcal (2) G-P(sol) polarization free energy of solvation -27.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds