Wall clock time and date at job start Wed Apr 1 2020 03:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.52870 * 2 1 4 4 C 1.53195 * 109.49327 * 239.91892 * 2 1 3 5 5 N 1.46928 * 108.77622 * 185.41383 * 4 2 1 6 6 S 1.65593 * 120.63355 * 233.63604 * 5 4 2 7 7 O 1.42100 * 106.40509 * 30.01521 * 6 5 4 8 8 O 1.42097 * 106.40616 * 162.93693 * 6 5 4 9 9 C 1.76198 * 107.21900 * 276.47739 * 6 5 4 10 10 C 1.37640 * 120.13176 * 116.27240 * 9 6 5 11 11 C 1.38617 * 120.24719 * 179.97438 * 10 9 6 12 12 C 1.38651 * 120.50303 * 0.02562 * 11 10 9 13 13 C 1.37594 * 120.25060 * 359.97322 * 12 11 10 14 14 C 1.40705 * 120.12434 * 296.00252 * 9 6 5 15 15 C 1.41397 * 120.24310 * 359.97438 * 14 9 6 16 16 H 1.07999 * 119.99954 * 332.33736 * 15 14 9 17 17 C 1.39949 * 119.99536 * 152.33423 * 15 14 9 18 18 N 1.30824 * 119.99542 * 162.43125 * 17 15 14 19 19 Si 1.86795 * 120.00142 * 342.43492 * 17 15 14 20 20 H 1.48501 * 109.47308 * 95.21624 * 19 17 15 21 21 H 1.48502 * 109.47071 * 215.21355 * 19 17 15 22 22 H 1.48504 * 109.47121 * 335.21072 * 19 17 15 23 23 C 1.46929 * 118.73843 * 53.60730 * 5 4 2 24 24 C 1.53192 * 108.89326 * 306.32523 * 23 5 4 25 25 C 1.53038 * 109.49670 * 120.08769 * 2 1 3 26 26 F 1.39901 * 109.46118 * 301.32926 * 25 2 1 27 27 F 1.39897 * 109.46456 * 61.30606 * 25 2 1 28 28 H 1.08997 * 109.47388 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46655 * 300.07953 * 1 2 3 30 30 H 1.09003 * 109.47096 * 60.07600 * 1 2 3 31 31 H 1.09001 * 109.58392 * 65.63267 * 4 2 1 32 32 H 1.08998 * 109.70779 * 305.27288 * 4 2 1 33 33 H 1.07996 * 119.87225 * 0.02562 * 10 9 6 34 34 H 1.08001 * 119.74219 * 180.02562 * 11 10 9 35 35 H 1.08001 * 119.87524 * 179.97438 * 12 11 10 36 36 H 1.07996 * 120.12889 * 180.02562 * 13 12 11 37 37 H 0.97000 * 119.99749 * 179.97438 * 18 17 15 38 38 H 1.09004 * 109.58107 * 66.17827 * 23 5 4 39 39 H 1.08996 * 109.59083 * 186.46253 * 23 5 4 40 40 H 1.09006 * 109.49557 * 174.65527 * 24 23 5 41 41 H 1.09001 * 109.49750 * 294.74818 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2496 5 7 3.5045 -0.8292 -1.1697 6 16 4.4586 -0.2842 -2.4086 7 8 3.7548 0.7916 -3.0139 8 8 5.7702 -0.1538 -1.8776 9 6 4.5347 -1.5687 -3.6123 10 6 4.0146 -1.3680 -4.8707 11 6 4.0736 -2.3767 -5.8197 12 6 4.6553 -3.5976 -5.5139 13 6 5.1817 -3.8204 -4.2623 14 6 5.1325 -2.8017 -3.2925 15 6 5.6757 -3.0171 -2.0049 16 1 6.0450 -2.1821 -1.4280 17 6 5.7347 -4.3123 -1.4782 18 7 6.5253 -4.5725 -0.4689 19 14 4.6848 -5.6695 -2.2163 20 1 5.4831 -6.4256 -3.2144 21 1 4.2376 -6.5901 -1.1403 22 1 3.4988 -5.0719 -2.8810 23 6 4.1053 -1.4268 0.0306 24 6 3.5740 -0.6959 1.2676 25 6 2.0408 -0.7232 1.2482 26 9 1.5498 -0.0833 2.3914 27 9 1.5994 -2.0506 1.2313 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5151 0.8893 30 1 -0.3633 0.5127 -0.8907 31 1 1.7637 -0.1579 -2.1389 32 1 1.6053 -1.7215 -1.3007 33 1 3.5595 -0.4208 -5.1199 34 1 3.6632 -2.2103 -6.8048 35 1 4.6954 -4.3765 -6.2609 36 1 5.6347 -4.7720 -4.0263 37 1 6.5660 -5.4701 -0.1035 38 1 3.8374 -2.4820 0.0865 39 1 5.1897 -1.3270 -0.0151 40 1 3.9387 -1.1912 2.1675 41 1 3.9192 0.3380 1.2556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601416722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:29 Heat of formation + Delta-G solvation = -177.491413 kcal Electronic energy + Delta-G solvation = -30410.533055 eV Core-core repulsion = 26051.698644 eV Total energy + Delta-G solvation = -4358.834411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.98377 -47.94664 -39.60390 -39.08983 -38.22773 -36.75367 -35.68608 -34.30390 -32.61144 -32.38895 -31.80799 -27.86603 -27.13817 -25.36409 -23.76072 -23.65095 -22.94148 -21.45229 -19.89693 -19.50223 -19.05874 -18.34834 -17.98580 -17.62576 -17.30530 -17.05189 -16.93513 -16.02920 -15.91967 -15.58681 -15.31300 -15.13454 -14.79974 -14.62865 -14.40287 -14.25586 -14.11982 -13.99902 -13.92772 -13.57753 -13.47484 -13.28950 -13.09418 -13.03228 -12.98236 -12.94755 -12.70869 -12.56740 -12.46385 -12.22176 -12.09166 -11.83423 -11.66609 -11.31289 -11.20305 -11.02966 -10.08589 -9.90295 -9.60903 -9.02272 -6.72906 -0.31007 0.35311 0.79068 1.22899 1.36401 1.44364 2.03440 2.10278 2.47678 2.74259 2.91072 3.06907 3.27768 3.31573 3.41274 3.53879 3.84339 3.93463 4.14243 4.19461 4.29665 4.30535 4.46832 4.50025 4.53932 4.64305 4.68574 4.70048 4.77214 4.89871 4.90285 4.96985 5.08164 5.12818 5.21582 5.28317 5.39590 5.51847 5.65307 5.71547 5.84514 6.07574 6.26627 6.52704 6.69869 7.99859 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.011853 B = 0.005967 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.643800 B = 4691.284428 C = 5689.120314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 H 0.114 0.886 4 C 0.121 3.879 5 N -0.992 5.992 6 S 2.718 3.282 7 O -0.994 6.994 8 O -0.997 6.997 9 C -0.789 4.789 10 C 0.004 3.996 11 C -0.253 4.253 12 C -0.041 4.041 13 C -0.263 4.263 14 C 0.147 3.853 15 C -0.479 4.479 16 H 0.107 0.893 17 C 0.067 3.933 18 N -0.802 5.802 19 Si 0.948 3.052 20 H -0.260 1.260 21 H -0.275 1.275 22 H -0.248 1.248 23 C 0.132 3.868 24 C -0.170 4.170 25 C 0.293 3.707 26 F -0.203 7.203 27 F -0.205 7.205 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.105 0.895 37 H 0.301 0.699 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.500 3.228 1.252 11.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 H 0.132 0.868 4 C -0.004 4.004 5 N -0.829 5.829 6 S 2.816 3.184 7 O -0.985 6.985 8 O -0.987 6.987 9 C -0.883 4.883 10 C -0.016 4.016 11 C -0.272 4.272 12 C -0.060 4.060 13 C -0.282 4.282 14 C 0.142 3.858 15 C -0.506 4.506 16 H 0.125 0.875 17 C -0.155 4.155 18 N -0.424 5.424 19 Si 0.772 3.228 20 H -0.185 1.185 21 H -0.202 1.202 22 H -0.172 1.172 23 C 0.007 3.993 24 C -0.210 4.210 25 C 0.257 3.743 26 F -0.184 7.184 27 F -0.186 7.186 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.129 0.871 32 H 0.098 0.902 33 H 0.150 0.850 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.127 0.873 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.957 3.912 1.512 10.804 hybrid contribution 0.074 -1.616 -0.172 1.627 sum -9.882 2.296 1.340 10.234 Atomic orbital electron populations 1.21796 0.90813 1.03527 1.04366 1.22493 0.99678 1.01503 0.92110 0.86769 1.21622 0.78078 1.01935 0.98766 1.57499 1.16181 1.77842 1.31385 1.00515 0.72156 0.73119 0.72566 1.93428 1.74669 1.52690 1.77711 1.93463 1.38893 1.86925 1.79443 1.30153 1.25566 1.18228 1.14356 1.20748 0.91292 0.98276 0.91243 1.20979 1.10951 0.94666 1.00648 1.21271 0.92367 0.97059 0.95283 1.21349 1.10872 1.00223 0.95791 1.17274 0.85589 0.90293 0.92623 1.20338 1.33218 0.96484 1.00583 0.87544 1.26691 0.93873 1.00847 0.94061 1.69675 1.27678 1.24814 1.20247 0.85760 0.80871 0.77844 0.78348 1.18524 1.20168 1.17189 1.21367 0.99001 0.97033 0.81933 1.23023 0.91897 1.05290 1.00767 1.21200 0.93387 0.75543 0.84210 1.92973 1.89736 1.81861 1.53846 1.92968 1.91194 1.37643 1.96820 0.91785 0.90881 0.89234 0.87119 0.90184 0.85037 0.84472 0.84750 0.87744 0.88738 0.91249 0.88742 0.87299 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.95 71.98 0.64 -2.12 16 2 C -0.14 -3.26 2.53 -10.72 -0.03 -3.29 16 3 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 4 C 0.12 3.41 5.53 86.36 0.48 3.89 16 5 N -0.99 -34.75 3.24 -513.05 -1.66 -36.41 16 6 S 2.72 112.61 5.10 -56.49 -0.29 112.32 16 7 O -0.99 -40.55 15.76 -128.00 -2.02 -42.57 16 8 O -1.00 -47.78 14.45 -128.00 -1.85 -49.63 16 9 C -0.79 -34.94 5.96 22.73 0.14 -34.80 16 10 C 0.00 0.16 9.53 22.22 0.21 0.37 16 11 C -0.25 -9.17 10.05 22.46 0.23 -8.95 16 12 C -0.04 -1.57 10.02 22.22 0.22 -1.35 16 13 C -0.26 -11.63 7.11 22.73 0.16 -11.47 16 14 C 0.15 7.01 5.17 -21.29 -0.11 6.90 16 15 C -0.48 -23.86 7.33 23.46 0.17 -23.69 16 16 H 0.11 5.66 3.94 -2.91 -0.01 5.64 16 17 C 0.07 3.16 5.43 85.26 0.46 3.63 16 18 N -0.80 -38.42 13.93 21.83 0.30 -38.11 16 19 Si 0.95 38.30 24.43 68.60 1.68 39.98 16 20 H -0.26 -10.05 6.68 99.48 0.66 -9.39 16 21 H -0.28 -10.49 7.11 99.48 0.71 -9.79 16 22 H -0.25 -10.28 6.75 99.48 0.67 -9.61 16 23 C 0.13 4.65 4.63 86.36 0.40 5.05 16 24 C -0.17 -4.72 5.65 30.78 0.17 -4.55 16 25 C 0.29 7.83 1.63 30.73 0.05 7.88 16 26 F -0.20 -5.34 16.50 44.97 0.74 -4.60 16 27 F -0.21 -6.15 15.64 44.97 0.70 -5.44 16 28 H 0.06 1.23 7.83 -2.39 -0.02 1.21 16 29 H 0.07 1.28 7.78 -2.39 -0.02 1.26 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.11 2.89 7.08 -2.39 -0.02 2.87 16 32 H 0.08 2.21 7.93 -2.39 -0.02 2.19 16 33 H 0.13 4.63 7.33 -2.91 -0.02 4.60 16 34 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 35 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 36 H 0.10 4.53 4.35 -2.91 -0.01 4.52 16 37 H 0.30 12.91 8.30 -92.71 -0.77 12.14 16 38 H 0.07 2.59 7.86 -2.38 -0.02 2.57 16 39 H 0.09 3.79 5.39 -2.39 -0.01 3.78 16 40 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16 41 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -59.54 335.59 1.81 -57.73 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 1.00 Total: 29.24 kcal Atomic # 6 Polarization: -65.70 SS G_CDS: 3.20 Total: -62.50 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -1.36 Total: -74.52 kcal Atomic # 8 Polarization: -88.33 SS G_CDS: -3.87 Total: -92.20 kcal Atomic # 9 Polarization: -11.49 SS G_CDS: 1.45 Total: -10.04 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 1.68 Total: 39.98 kcal Atomic # 16 Polarization: 112.61 SS G_CDS: -0.29 Total: 112.32 kcal Total: -59.54 1.81 -57.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601416722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.764 kcal (2) G-P(sol) polarization free energy of solvation -59.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds