Wall clock time and date at job start Wed Apr 1 2020 03:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.51812 * 2 1 4 4 C 1.53303 * 109.51310 * 239.90033 * 2 1 3 5 5 N 1.47155 * 108.38637 * 187.72534 * 4 2 1 6 6 S 1.65599 * 120.98210 * 230.55656 * 5 4 2 7 7 O 1.42103 * 104.27566 * 26.04759 * 6 5 4 8 8 O 1.42095 * 104.27605 * 153.90388 * 6 5 4 9 9 C 1.81396 * 104.44715 * 269.97618 * 6 5 4 10 10 C 1.53002 * 109.46754 * 179.97438 * 9 6 5 11 11 C 1.53005 * 109.46943 * 180.02562 * 10 9 6 12 12 C 1.50696 * 109.46979 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00449 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99943 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99910 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99847 * 0.02562 * 14 12 11 17 17 H 1.48505 * 109.47047 * 89.99621 * 16 14 12 18 18 H 1.48495 * 109.46979 * 209.99570 * 16 14 12 19 19 H 1.48498 * 109.47187 * 329.99645 * 16 14 12 20 20 C 1.47148 * 118.03412 * 50.53095 * 5 4 2 21 21 C 1.53294 * 108.39012 * 309.46925 * 20 5 4 22 22 H 1.09001 * 109.51208 * 292.32826 * 21 20 5 23 23 C 1.52997 * 109.51669 * 172.22580 * 21 20 5 24 24 F 1.39905 * 109.47157 * 59.99691 * 23 21 20 25 25 F 1.39900 * 109.47010 * 300.00082 * 23 21 20 26 26 F 1.39897 * 109.47422 * 179.97438 * 23 21 20 27 27 O 1.42962 * 109.22256 * 52.29991 * 21 20 5 28 28 H 1.08999 * 109.47581 * 180.09885 * 1 2 3 29 29 H 1.08999 * 109.47161 * 300.10504 * 1 2 3 30 30 H 1.09004 * 109.46826 * 60.10117 * 1 2 3 31 31 H 1.08999 * 109.68154 * 67.99954 * 4 2 1 32 32 H 1.09001 * 109.67812 * 307.44708 * 4 2 1 33 33 H 1.08994 * 109.47239 * 299.99841 * 9 6 5 34 34 H 1.08998 * 109.47357 * 60.00110 * 9 6 5 35 35 H 1.08999 * 109.47602 * 299.99698 * 10 9 6 36 36 H 1.08996 * 109.46912 * 60.00558 * 10 9 6 37 37 H 1.08994 * 109.47136 * 300.00040 * 11 10 9 38 38 H 1.08998 * 109.47271 * 60.00194 * 11 10 9 39 39 H 0.97003 * 119.99827 * 180.02562 * 15 14 12 40 40 H 1.09002 * 109.68270 * 189.74276 * 20 5 4 41 41 H 1.09009 * 109.67903 * 69.19093 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 -1.2501 5 7 3.5013 -0.8747 -1.1346 6 16 4.5058 -0.4157 -2.3686 7 8 3.7760 0.5893 -3.0591 8 8 5.7367 -0.1157 -1.7253 9 6 4.6698 -1.9021 -3.3953 10 6 5.5853 -1.6024 -4.5839 11 6 5.7232 -2.8559 -5.4503 12 6 6.6255 -2.5609 -6.6207 13 1 7.0577 -1.5777 -6.7350 14 6 6.9000 -3.5464 -7.5452 15 7 7.6870 -3.2887 -8.5668 16 14 6.1530 -5.2470 -7.3471 17 1 4.8457 -5.2982 -8.0498 18 1 7.0683 -6.2606 -7.9300 19 1 5.9510 -5.5340 -5.9042 20 6 4.0417 -1.4440 0.1100 21 6 3.4322 -0.6844 1.2938 22 1 3.8039 0.3402 1.2991 23 6 3.8232 -1.3766 2.6011 24 9 5.2168 -1.3892 2.7234 25 9 3.3438 -2.6908 2.5944 26 9 3.2671 -0.6823 3.6809 27 8 2.0084 -0.6763 1.1651 28 1 -0.3634 -1.0276 0.0018 29 1 -0.3633 0.5155 0.8890 30 1 -0.3633 0.5123 -0.8909 31 1 1.8022 -0.1393 -2.1378 32 1 1.5764 -1.7077 -1.3211 33 1 5.0981 -2.7089 -2.8007 34 1 3.6874 -2.2018 -3.7603 35 1 5.1566 -0.7956 -5.1785 36 1 6.5677 -1.3025 -4.2192 37 1 6.1517 -3.6629 -4.8561 38 1 4.7407 -3.1554 -5.8150 39 1 7.8799 -3.9819 -9.2174 40 1 5.1261 -1.3351 0.1231 41 1 3.7774 -2.4996 0.1759 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610409448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:16 Heat of formation + Delta-G solvation = -272.552879 kcal Electronic energy + Delta-G solvation = -29505.242257 eV Core-core repulsion = 24711.516447 eV Total energy + Delta-G solvation = -4793.725810 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.105 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.48363 -48.00657 -47.94410 -40.11494 -37.26966 -36.06952 -35.40894 -34.90313 -33.92632 -32.27779 -30.03658 -28.47127 -27.20443 -25.45857 -23.61536 -22.97548 -21.66021 -20.54177 -19.36741 -18.98816 -18.67172 -18.35707 -17.79082 -17.01749 -16.94252 -16.52144 -16.21659 -15.74481 -15.36817 -14.97451 -14.72737 -14.56810 -14.42841 -14.36909 -14.25644 -14.15541 -14.08504 -14.07017 -13.32785 -13.00186 -12.80472 -12.76611 -12.47372 -12.42720 -12.27068 -12.17501 -12.10515 -11.90902 -11.78255 -11.70073 -11.16947 -11.08133 -11.00599 -10.80201 -10.17129 -9.94827 -9.82179 -9.35466 -9.23664 -8.63455 -6.13030 -4.12824 0.09510 1.96333 2.30483 2.83501 3.22945 3.31015 3.32477 3.32948 3.47178 3.71166 3.95901 3.98807 4.03126 4.20052 4.36017 4.42470 4.46707 4.61866 4.72345 4.81046 4.92433 4.94263 5.10899 5.19084 5.20518 5.24727 5.38265 5.52214 5.63666 5.68432 5.91386 6.06484 6.16154 6.32933 6.57845 7.05255 7.19325 7.65555 8.42238 8.90947 9.47806 11.00194 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.016463 B = 0.002782 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.359086 B =10061.270378 C =10542.625845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.080 3.920 3 H 0.074 0.926 4 C 0.083 3.917 5 N -1.006 6.006 6 S 2.596 3.404 7 O -0.951 6.951 8 O -0.952 6.952 9 C -0.610 4.610 10 C -0.098 4.098 11 C -0.004 4.004 12 C -0.529 4.529 13 H 0.075 0.925 14 C 0.068 3.932 15 N -0.899 5.899 16 Si 0.880 3.120 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.266 1.266 20 C 0.086 3.914 21 C 0.038 3.962 22 H 0.110 0.890 23 C 0.470 3.530 24 F -0.170 7.170 25 F -0.172 7.172 26 F -0.174 7.174 27 O -0.358 6.358 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.020 0.980 38 H 0.016 0.984 39 H 0.265 0.735 40 H 0.120 0.880 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.588 4.523 23.021 27.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.021 3.979 3 H 0.092 0.908 4 C -0.043 4.043 5 N -0.841 5.841 6 S 2.694 3.306 7 O -0.941 6.941 8 O -0.942 6.942 9 C -0.743 4.743 10 C -0.138 4.138 11 C -0.042 4.042 12 C -0.567 4.567 13 H 0.093 0.907 14 C -0.134 4.134 15 N -0.538 5.538 16 Si 0.707 3.293 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.191 1.191 20 C -0.040 4.040 21 C -0.024 4.024 22 H 0.128 0.872 23 C 0.414 3.586 24 F -0.151 7.151 25 F -0.154 7.154 26 F -0.155 7.155 27 O -0.277 6.277 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.131 0.869 32 H 0.102 0.898 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.039 0.961 38 H 0.034 0.966 39 H 0.074 0.926 40 H 0.138 0.862 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.251 5.222 22.923 27.492 hybrid contribution -0.250 -1.674 -0.080 1.695 sum -14.500 3.548 22.843 27.288 Atomic orbital electron populations 1.21765 0.91185 1.03756 1.03480 1.22599 0.95983 0.95560 0.83713 0.90837 1.22306 0.79233 1.02577 1.00144 1.58072 1.17114 1.80103 1.28856 1.05618 0.73418 0.77435 0.74141 1.93577 1.72002 1.54495 1.74032 1.93580 1.43832 1.83357 1.73423 1.30611 1.10418 1.19990 1.13234 1.21345 0.97006 1.02486 0.92931 1.19528 0.97157 0.92457 0.95107 1.21117 1.28770 0.99983 1.06803 0.90717 1.25027 0.94676 0.98784 0.94886 1.69908 1.36648 1.34110 1.13104 0.86775 0.79309 0.84364 0.78806 1.20195 1.21206 1.19064 1.22044 1.00845 0.98417 0.82691 1.23410 0.85905 1.01636 0.91418 0.87194 1.19948 0.74941 0.77609 0.86052 1.93247 1.29157 1.96382 1.96356 1.93216 1.87936 1.37477 1.96730 1.93218 1.85195 1.78924 1.58154 1.87953 1.16760 1.78218 1.44763 0.91137 0.91095 0.89921 0.86905 0.89828 0.85210 0.85212 0.90919 0.90877 0.96126 0.96575 0.92562 0.86201 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.57 37.15 0.36 -0.43 16 2 C 0.08 0.61 3.40 -26.58 -0.09 0.52 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C 0.08 0.66 5.96 -3.53 -0.02 0.64 16 5 N -1.01 -9.85 3.27 -113.05 -0.37 -10.22 16 6 S 2.60 33.67 5.47 -107.50 -0.59 33.08 16 7 O -0.95 -14.53 16.62 -57.54 -0.96 -15.49 16 8 O -0.95 -14.79 16.62 -57.54 -0.96 -15.75 16 9 C -0.61 -8.13 6.18 37.16 0.23 -7.90 16 10 C -0.10 -1.82 5.16 -26.73 -0.14 -1.96 16 11 C 0.00 -0.09 4.04 -27.88 -0.11 -0.20 16 12 C -0.53 -14.76 9.66 -34.44 -0.33 -15.09 16 13 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 14 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 15 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 16 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 20 C 0.09 0.77 5.70 -3.54 -0.02 0.75 16 21 C 0.04 0.33 2.76 -26.58 -0.07 0.26 16 22 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 23 C 0.47 4.29 2.85 37.16 0.11 4.39 16 24 F -0.17 -1.58 16.96 2.25 0.04 -1.55 16 25 F -0.17 -1.68 16.63 2.25 0.04 -1.64 16 26 F -0.17 -1.70 17.26 2.25 0.04 -1.66 16 27 O -0.36 -3.24 9.92 -35.23 -0.35 -3.59 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.11 0.87 6.88 -51.93 -0.36 0.51 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.13 1.46 8.14 -51.92 -0.42 1.03 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 38 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.12 1.07 6.78 -51.93 -0.35 0.71 16 41 H 0.09 0.70 7.62 -51.92 -0.40 0.30 16 LS Contribution 359.44 15.07 5.42 5.42 Total: -1.00 -34.43 359.44 -7.46 -41.89 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -5.69 Total: -3.16 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -0.19 Total: -17.17 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.40 Total: -36.78 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -2.26 Total: -34.82 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.11 Total: -4.85 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Atomic # 16 Polarization: 33.67 SS G_CDS: -0.59 Total: 33.08 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.43 -7.46 -41.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610409448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -230.663 kcal (2) G-P(sol) polarization free energy of solvation -34.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -272.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds