Wall clock time and date at job start Wed Apr 1 2020 03:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.51812 * 2 1 4 4 C 1.53303 * 109.51310 * 239.90033 * 2 1 3 5 5 N 1.47155 * 108.38637 * 187.72534 * 4 2 1 6 6 S 1.65599 * 120.98210 * 230.55656 * 5 4 2 7 7 O 1.42103 * 104.27566 * 26.04759 * 6 5 4 8 8 O 1.42095 * 104.27605 * 153.90388 * 6 5 4 9 9 C 1.81396 * 104.44715 * 269.97618 * 6 5 4 10 10 C 1.53002 * 109.46754 * 179.97438 * 9 6 5 11 11 C 1.53005 * 109.46943 * 180.02562 * 10 9 6 12 12 C 1.50696 * 109.46979 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00449 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99943 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99910 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99847 * 0.02562 * 14 12 11 17 17 H 1.48505 * 109.47047 * 89.99621 * 16 14 12 18 18 H 1.48495 * 109.46979 * 209.99570 * 16 14 12 19 19 H 1.48498 * 109.47187 * 329.99645 * 16 14 12 20 20 C 1.47148 * 118.03412 * 50.53095 * 5 4 2 21 21 C 1.53294 * 108.39012 * 309.46925 * 20 5 4 22 22 H 1.09001 * 109.51208 * 292.32826 * 21 20 5 23 23 C 1.52997 * 109.51669 * 172.22580 * 21 20 5 24 24 F 1.39905 * 109.47157 * 59.99691 * 23 21 20 25 25 F 1.39900 * 109.47010 * 300.00082 * 23 21 20 26 26 F 1.39897 * 109.47422 * 179.97438 * 23 21 20 27 27 O 1.42962 * 109.22256 * 52.29991 * 21 20 5 28 28 H 1.08999 * 109.47581 * 180.09885 * 1 2 3 29 29 H 1.08999 * 109.47161 * 300.10504 * 1 2 3 30 30 H 1.09004 * 109.46826 * 60.10117 * 1 2 3 31 31 H 1.08999 * 109.68154 * 67.99954 * 4 2 1 32 32 H 1.09001 * 109.67812 * 307.44708 * 4 2 1 33 33 H 1.08994 * 109.47239 * 299.99841 * 9 6 5 34 34 H 1.08998 * 109.47357 * 60.00110 * 9 6 5 35 35 H 1.08999 * 109.47602 * 299.99698 * 10 9 6 36 36 H 1.08996 * 109.46912 * 60.00558 * 10 9 6 37 37 H 1.08994 * 109.47136 * 300.00040 * 11 10 9 38 38 H 1.08998 * 109.47271 * 60.00194 * 11 10 9 39 39 H 0.97003 * 119.99827 * 180.02562 * 15 14 12 40 40 H 1.09002 * 109.68270 * 189.74276 * 20 5 4 41 41 H 1.09009 * 109.67903 * 69.19093 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 -1.2501 5 7 3.5013 -0.8747 -1.1346 6 16 4.5058 -0.4157 -2.3686 7 8 3.7760 0.5893 -3.0591 8 8 5.7367 -0.1157 -1.7253 9 6 4.6698 -1.9021 -3.3953 10 6 5.5853 -1.6024 -4.5839 11 6 5.7232 -2.8559 -5.4503 12 6 6.6255 -2.5609 -6.6207 13 1 7.0577 -1.5777 -6.7350 14 6 6.9000 -3.5464 -7.5452 15 7 7.6870 -3.2887 -8.5668 16 14 6.1530 -5.2470 -7.3471 17 1 4.8457 -5.2982 -8.0498 18 1 7.0683 -6.2606 -7.9300 19 1 5.9510 -5.5340 -5.9042 20 6 4.0417 -1.4440 0.1100 21 6 3.4322 -0.6844 1.2938 22 1 3.8039 0.3402 1.2991 23 6 3.8232 -1.3766 2.6011 24 9 5.2168 -1.3892 2.7234 25 9 3.3438 -2.6908 2.5944 26 9 3.2671 -0.6823 3.6809 27 8 2.0084 -0.6763 1.1651 28 1 -0.3634 -1.0276 0.0018 29 1 -0.3633 0.5155 0.8890 30 1 -0.3633 0.5123 -0.8909 31 1 1.8022 -0.1393 -2.1378 32 1 1.5764 -1.7077 -1.3211 33 1 5.0981 -2.7089 -2.8007 34 1 3.6874 -2.2018 -3.7603 35 1 5.1566 -0.7956 -5.1785 36 1 6.5677 -1.3025 -4.2192 37 1 6.1517 -3.6629 -4.8561 38 1 4.7407 -3.1554 -5.8150 39 1 7.8799 -3.9819 -9.2174 40 1 5.1261 -1.3351 0.1231 41 1 3.7774 -2.4996 0.1759 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610409448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:15 Heat of formation + Delta-G solvation = -297.446797 kcal Electronic energy + Delta-G solvation = -29506.321738 eV Core-core repulsion = 24711.516447 eV Total energy + Delta-G solvation = -4794.805292 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.105 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.20892 -48.73347 -48.67785 -40.75808 -38.38368 -37.17868 -36.53276 -36.13414 -34.50949 -34.26243 -30.65835 -30.17214 -27.83087 -26.21249 -25.27829 -23.62003 -22.36180 -22.12791 -20.24238 -19.70796 -19.46178 -19.17177 -18.98441 -18.59551 -17.70913 -17.39891 -17.26873 -16.53600 -16.34406 -16.24830 -15.69209 -15.66162 -15.40779 -15.28393 -15.10287 -14.87336 -14.83939 -14.81616 -14.76118 -14.09485 -13.95576 -13.69519 -13.55082 -13.41500 -13.28619 -13.25434 -13.18587 -12.78787 -12.73803 -12.71275 -12.59172 -12.41485 -11.85937 -11.79792 -11.65876 -11.50268 -11.42076 -11.26236 -10.78183 -10.05054 -8.30588 -6.36669 -0.93316 1.26587 1.36679 1.39311 1.44886 1.50686 2.16979 2.35795 2.61983 2.69097 2.78706 3.04376 3.05111 3.26905 3.33222 3.52815 3.68086 3.79882 3.85351 3.92197 4.06965 4.16717 4.25942 4.31389 4.48310 4.57393 4.70631 4.76583 4.83140 4.83877 4.94583 5.02595 5.18073 5.32595 5.33419 5.44732 5.61841 5.74413 6.24217 6.71921 7.28184 8.86391 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.016463 B = 0.002782 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.359086 B =10061.270378 C =10542.625845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.074 3.926 3 H 0.071 0.929 4 C 0.075 3.925 5 N -0.998 5.998 6 S 2.616 3.384 7 O -0.977 6.977 8 O -0.982 6.982 9 C -0.606 4.606 10 C -0.104 4.104 11 C -0.005 4.005 12 C -0.544 4.544 13 H 0.030 0.970 14 C 0.001 3.999 15 N -0.953 5.953 16 Si 0.955 3.045 17 H -0.264 1.264 18 H -0.287 1.287 19 H -0.238 1.238 20 C 0.080 3.920 21 C 0.038 3.962 22 H 0.116 0.884 23 C 0.472 3.528 24 F -0.172 7.172 25 F -0.175 7.175 26 F -0.179 7.179 27 O -0.366 6.366 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.032 0.968 38 H 0.032 0.968 39 H 0.267 0.733 40 H 0.119 0.881 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.898 2.769 24.628 29.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.016 3.984 3 H 0.089 0.911 4 C -0.049 4.049 5 N -0.835 5.835 6 S 2.715 3.285 7 O -0.967 6.967 8 O -0.972 6.972 9 C -0.738 4.738 10 C -0.144 4.144 11 C -0.044 4.044 12 C -0.582 4.582 13 H 0.048 0.952 14 C -0.196 4.196 15 N -0.593 5.593 16 Si 0.777 3.223 17 H -0.189 1.189 18 H -0.212 1.212 19 H -0.161 1.161 20 C -0.046 4.046 21 C -0.024 4.024 22 H 0.134 0.866 23 C 0.417 3.583 24 F -0.154 7.154 25 F -0.156 7.156 26 F -0.160 7.160 27 O -0.285 6.285 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.134 0.866 32 H 0.124 0.876 33 H 0.172 0.828 34 H 0.176 0.824 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.137 0.863 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.567 3.489 24.543 29.817 hybrid contribution 0.485 -1.025 -0.557 1.263 sum -16.083 2.464 23.987 28.984 Atomic orbital electron populations 1.21786 0.89496 1.04290 1.04237 1.22777 0.97268 0.95256 0.83081 0.91123 1.22585 0.77852 1.04041 1.00450 1.57724 1.17658 1.80039 1.28113 1.04763 0.72788 0.76936 0.74062 1.93541 1.72455 1.55730 1.74979 1.93540 1.45682 1.83877 1.74084 1.30531 1.10781 1.21059 1.11419 1.21196 0.98085 1.00559 0.94539 1.19504 0.96471 0.94598 0.93798 1.21563 1.29387 0.98302 1.08990 0.95156 1.26117 0.95165 1.04005 0.94313 1.70084 1.38792 1.35907 1.14517 0.85598 0.78495 0.77810 0.80393 1.18875 1.21248 1.16140 1.22227 1.00889 0.99429 0.82078 1.23417 0.86078 1.01912 0.90994 0.86622 1.19986 0.74761 0.77441 0.86103 1.93244 1.29348 1.96380 1.96380 1.93208 1.87965 1.37713 1.96746 1.93207 1.85277 1.79035 1.58473 1.87956 1.16664 1.78433 1.45447 0.90686 0.91066 0.88475 0.86632 0.87598 0.82755 0.82420 0.91693 0.91869 0.94997 0.94970 0.92425 0.86341 0.87052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.57 71.98 0.69 -0.48 16 2 C 0.07 0.96 3.40 30.69 0.10 1.06 16 3 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 4 C 0.08 0.98 5.96 86.36 0.51 1.50 16 5 N -1.00 -17.04 3.27 -511.59 -1.67 -18.72 16 6 S 2.62 63.68 5.47 -56.49 -0.31 63.37 16 7 O -0.98 -28.80 16.62 -127.65 -2.12 -30.92 16 8 O -0.98 -29.77 16.62 -127.65 -2.12 -31.89 16 9 C -0.61 -14.42 6.18 71.98 0.44 -13.97 16 10 C -0.10 -3.78 5.16 30.60 0.16 -3.62 16 11 C -0.01 -0.22 4.04 29.85 0.12 -0.10 16 12 C -0.54 -30.98 9.66 25.60 0.25 -30.73 16 13 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 14 C 0.00 0.04 5.47 84.66 0.46 0.51 16 15 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 16 Si 0.95 42.45 27.47 68.60 1.88 44.34 16 17 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 18 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.24 -9.47 6.54 99.48 0.65 -8.82 16 20 C 0.08 1.23 5.70 86.35 0.49 1.73 16 21 C 0.04 0.59 2.76 30.69 0.08 0.67 16 22 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 23 C 0.47 7.89 2.85 71.98 0.21 8.10 16 24 F -0.17 -2.99 16.96 44.97 0.76 -2.23 16 25 F -0.17 -3.07 16.63 44.97 0.75 -2.32 16 26 F -0.18 -3.28 17.26 44.97 0.78 -2.51 16 27 O -0.37 -5.82 9.92 -148.98 -1.48 -7.29 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.12 1.48 6.88 -2.39 -0.02 1.46 16 32 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.15 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.16 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.03 1.32 7.20 -2.39 -0.02 1.31 16 38 H 0.03 1.31 7.57 -2.39 -0.02 1.29 16 39 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 40 H 0.12 1.89 6.78 -2.39 -0.02 1.88 16 41 H 0.11 1.32 7.62 -2.38 -0.02 1.30 16 Total: -1.00 -75.85 359.44 1.28 -74.57 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 0.99 Total: 8.21 kcal Atomic # 6 Polarization: -38.87 SS G_CDS: 3.52 Total: -35.35 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: -1.37 Total: -77.99 kcal Atomic # 8 Polarization: -64.38 SS G_CDS: -5.72 Total: -70.10 kcal Atomic # 9 Polarization: -9.35 SS G_CDS: 2.29 Total: -7.06 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.88 Total: 44.34 kcal Atomic # 16 Polarization: 63.68 SS G_CDS: -0.31 Total: 63.37 kcal Total: -75.85 1.28 -74.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610409448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -222.875 kcal (2) G-P(sol) polarization free energy of solvation -75.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -298.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -297.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds