Wall clock time and date at job start Wed Apr 1 2020 03:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.51501 * 2 1 4 4 C 1.53297 * 109.51557 * 120.10512 * 2 1 3 5 5 N 1.47150 * 108.41463 * 67.64895 * 4 2 1 6 6 S 1.65599 * 120.98218 * 230.54133 * 5 4 2 7 7 O 1.42102 * 104.28001 * 206.07218 * 6 5 4 8 8 O 1.42098 * 104.28010 * 333.93409 * 6 5 4 9 9 C 1.81403 * 104.44596 * 90.00574 * 6 5 4 10 10 C 1.53005 * 109.47017 * 179.97438 * 9 6 5 11 11 C 1.53000 * 109.47005 * 179.97438 * 10 9 6 12 12 C 1.50704 * 109.46918 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99989 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00092 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00444 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99974 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.46766 * 89.99506 * 16 14 12 18 18 H 1.48495 * 109.47120 * 209.99685 * 16 14 12 19 19 H 1.48499 * 109.46806 * 330.00034 * 16 14 12 20 20 C 1.47227 * 117.98768 * 50.52570 * 5 4 2 21 21 C 1.53299 * 108.40126 * 309.48190 * 20 5 4 22 22 H 1.08996 * 109.51416 * 292.37699 * 21 20 5 23 23 C 1.53002 * 109.55075 * 172.25500 * 21 20 5 24 24 F 1.39901 * 109.47553 * 300.22554 * 23 21 20 25 25 F 1.39905 * 109.47383 * 60.22881 * 23 21 20 26 26 F 1.39901 * 109.46963 * 180.22811 * 23 21 20 27 27 O 1.42959 * 109.22435 * 52.30769 * 21 20 5 28 28 H 1.09006 * 109.46904 * 299.89457 * 1 2 3 29 29 H 1.08998 * 109.47309 * 59.89515 * 1 2 3 30 30 H 1.08999 * 109.46890 * 179.90009 * 1 2 3 31 31 H 1.09002 * 109.68431 * 187.39510 * 4 2 1 32 32 H 1.08999 * 109.67914 * 307.91095 * 4 2 1 33 33 H 1.09000 * 109.46995 * 299.99489 * 9 6 5 34 34 H 1.08992 * 109.47364 * 60.00184 * 9 6 5 35 35 H 1.08996 * 109.47280 * 299.99998 * 10 9 6 36 36 H 1.09001 * 109.46885 * 60.00107 * 10 9 6 37 37 H 1.09000 * 109.47349 * 299.99832 * 11 10 9 38 38 H 1.09001 * 109.46863 * 60.00520 * 11 10 9 39 39 H 0.97000 * 120.00446 * 179.97438 * 15 14 12 40 40 H 1.09000 * 109.67268 * 189.75452 * 20 5 4 41 41 H 1.09002 * 109.70663 * 69.23167 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0421 -0.7247 1.2500 5 7 1.6969 -2.1505 1.1348 6 16 0.9296 -2.9443 2.3690 7 8 1.3092 -4.3034 2.2013 8 8 1.2976 -2.2193 3.5344 9 6 -0.8368 -2.7288 2.0166 10 6 -1.6618 -3.4270 3.0997 11 6 -3.1516 -3.2447 2.8028 12 6 -3.9642 -3.9328 3.8692 13 1 -3.4677 -4.4483 4.6780 14 6 -5.3414 -3.9036 3.8129 15 7 -6.0506 -4.5036 4.7438 16 14 -6.2003 -3.0115 2.4143 17 1 -6.4219 -3.9539 1.2882 18 1 -7.5075 -2.4903 2.8883 19 1 -5.3540 -1.8811 1.9545 20 6 2.0542 -2.8494 -0.1108 21 6 1.5415 -2.0211 -1.2946 22 1 0.4516 -2.0293 -1.2997 23 6 2.0632 -2.6197 -2.6024 24 9 3.4622 -2.6110 -2.5940 25 9 1.6058 -3.9359 -2.7281 26 9 1.5987 -1.8596 -3.6811 27 8 2.0084 -0.6762 -1.1653 28 1 -0.3633 0.5122 0.8910 29 1 -0.3634 0.5154 -0.8890 30 1 -0.3633 -1.0277 -0.0018 31 1 3.1241 -0.6135 1.3215 32 1 1.5703 -0.3034 2.1377 33 1 -1.0778 -1.6659 2.0045 34 1 -1.0694 -3.1653 1.0454 35 1 -1.4207 -4.4898 3.1115 36 1 -1.4293 -2.9908 4.0712 37 1 -3.3924 -2.1817 2.7913 38 1 -3.3844 -3.6806 1.8312 39 1 -7.0196 -4.4827 4.7043 40 1 1.5900 -3.8355 -0.1244 41 1 3.1373 -2.9527 -0.1767 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610409451.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:23 Heat of formation + Delta-G solvation = -269.516097 kcal Electronic energy + Delta-G solvation = -30166.717039 eV Core-core repulsion = 25373.122913 eV Total energy + Delta-G solvation = -4793.594126 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.105 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.47955 -48.00701 -47.93530 -40.37237 -37.25938 -36.06304 -35.40036 -34.94479 -33.53537 -32.30403 -30.15496 -28.52168 -27.22409 -25.68622 -23.66432 -23.51619 -20.97444 -20.49244 -19.48799 -18.92246 -18.66564 -18.47085 -17.63000 -17.02416 -16.99912 -16.36900 -16.21093 -15.65009 -15.26375 -15.12950 -14.93640 -14.71429 -14.55352 -14.37000 -14.36189 -14.25781 -14.08202 -14.07298 -13.32455 -13.02442 -12.81592 -12.60980 -12.45272 -12.42587 -12.29362 -12.12674 -12.09955 -11.93523 -11.89311 -11.72304 -11.16919 -11.03986 -10.97553 -10.89473 -10.18819 -9.95565 -9.78888 -9.36606 -9.24829 -8.65046 -6.14385 -4.14353 0.08432 1.97277 2.29844 2.87532 3.21219 3.28879 3.30049 3.33924 3.46005 3.72834 3.94481 3.97871 4.00218 4.17941 4.34176 4.34901 4.49687 4.57010 4.61436 4.75647 4.85665 4.87327 5.11769 5.18851 5.20645 5.27105 5.35995 5.52420 5.55931 5.71573 5.91639 6.04689 6.13136 6.28030 6.55627 7.02704 7.16898 7.63847 8.40759 8.89667 9.46316 10.98852 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.013412 B = 0.003387 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.256083 B = 8264.687441 C = 8964.743930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.078 3.922 3 H 0.128 0.872 4 C 0.089 3.911 5 N -1.003 6.003 6 S 2.596 3.404 7 O -0.949 6.949 8 O -0.948 6.948 9 C -0.618 4.618 10 C -0.097 4.097 11 C -0.003 4.003 12 C -0.529 4.529 13 H 0.075 0.925 14 C 0.069 3.931 15 N -0.899 5.899 16 Si 0.880 3.120 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.266 1.266 20 C 0.094 3.906 21 C 0.025 3.975 22 H 0.113 0.887 23 C 0.469 3.531 24 F -0.173 7.173 25 F -0.171 7.171 26 F -0.173 7.173 27 O -0.352 6.352 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.020 0.980 38 H 0.016 0.984 39 H 0.265 0.735 40 H 0.114 0.886 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.003 9.810 -15.017 25.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.020 3.980 3 H 0.145 0.855 4 C -0.036 4.036 5 N -0.839 5.839 6 S 2.693 3.307 7 O -0.940 6.940 8 O -0.939 6.939 9 C -0.750 4.750 10 C -0.136 4.136 11 C -0.042 4.042 12 C -0.567 4.567 13 H 0.093 0.907 14 C -0.133 4.133 15 N -0.537 5.537 16 Si 0.707 3.293 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.191 1.191 20 C -0.033 4.033 21 C -0.036 4.036 22 H 0.131 0.869 23 C 0.414 3.586 24 F -0.154 7.154 25 F -0.152 7.152 26 F -0.154 7.154 27 O -0.270 6.270 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.038 0.962 38 H 0.034 0.966 39 H 0.074 0.926 40 H 0.133 0.867 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 18.433 9.398 -14.389 25.201 hybrid contribution -1.257 0.515 -1.210 1.819 sum 17.176 9.913 -15.598 25.230 Atomic orbital electron populations 1.22613 0.95244 1.03486 1.04408 1.22789 0.94536 0.96699 0.84023 0.85462 1.22203 1.02656 0.79623 0.99137 1.58099 1.74517 1.19998 1.31255 1.05678 0.77661 0.73988 0.73340 1.93593 1.81483 1.33681 1.85208 1.93589 1.81811 1.73194 1.45265 1.30744 1.22624 1.10988 1.10620 1.21329 0.98178 0.99484 0.94611 1.19523 0.89927 0.97258 0.97467 1.21113 0.91197 1.34426 1.09967 0.90709 1.25017 0.97481 0.94951 0.95856 1.69903 1.06339 1.43553 1.33925 0.86786 0.79136 0.80605 0.82777 1.20183 1.21211 1.19119 1.21977 1.03390 0.95680 0.82210 1.23552 1.01643 0.86747 0.91666 0.86903 1.19951 0.76137 0.76384 0.86102 1.93215 1.29228 1.96219 1.96728 1.93245 1.88806 1.36823 1.96345 1.93224 1.88389 1.75611 1.58217 1.88029 1.72092 1.22100 1.44815 0.90035 0.90652 0.91710 0.89530 0.87364 0.85225 0.85381 0.90876 0.90875 0.96179 0.96604 0.92550 0.86744 0.88598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.30 8.59 37.16 0.32 -0.98 16 2 C 0.08 0.50 3.92 -26.58 -0.10 0.40 16 3 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 4 C 0.09 0.67 5.88 -3.53 -0.02 0.65 16 5 N -1.00 -9.62 2.80 -113.00 -0.32 -9.93 16 6 S 2.60 33.72 5.42 -107.50 -0.58 33.13 16 7 O -0.95 -15.03 16.82 -57.54 -0.97 -15.99 16 8 O -0.95 -14.72 16.81 -57.54 -0.97 -15.69 16 9 C -0.62 -7.92 5.39 37.16 0.20 -7.72 16 10 C -0.10 -1.75 5.16 -26.73 -0.14 -1.89 16 11 C 0.00 -0.07 4.04 -27.88 -0.11 -0.18 16 12 C -0.53 -14.61 9.66 -34.44 -0.33 -14.94 16 13 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 14 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 15 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 16 Si 0.88 20.82 27.47 -169.99 -4.67 16.15 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 20 C 0.09 0.82 5.54 -3.49 -0.02 0.80 16 21 C 0.03 0.21 2.37 -26.58 -0.06 0.14 16 22 H 0.11 0.77 6.25 -51.93 -0.32 0.45 16 23 C 0.47 4.22 2.85 37.16 0.11 4.32 16 24 F -0.17 -1.67 16.63 2.25 0.04 -1.63 16 25 F -0.17 -1.57 16.97 2.25 0.04 -1.53 16 26 F -0.17 -1.70 17.26 2.25 0.04 -1.66 16 27 O -0.35 -2.95 10.12 -35.23 -0.36 -3.31 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.45 4.86 -51.93 -0.25 0.19 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.11 0.76 7.22 -51.93 -0.37 0.38 16 33 H 0.13 1.37 7.49 -51.92 -0.39 0.99 16 34 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 38 H 0.02 0.34 7.57 -51.93 -0.39 -0.06 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.11 0.96 7.14 -51.93 -0.37 0.59 16 41 H 0.10 0.79 7.62 -51.93 -0.40 0.40 16 LS Contribution 352.52 15.07 5.31 5.31 Total: -1.00 -34.60 352.52 -7.34 -41.94 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -5.42 Total: -2.89 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -0.26 Total: -17.53 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.46 Total: -36.30 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -2.29 Total: -34.99 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.11 Total: -4.82 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Atomic # 16 Polarization: 33.72 SS G_CDS: -0.58 Total: 33.13 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.60 -7.34 -41.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610409451.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -227.579 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -269.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds