Wall clock time and date at job start Wed Apr 1 2020 04:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42899 * 114.00056 * 2 1 4 4 C 1.53009 * 109.49671 * 56.26131 * 3 2 1 5 5 F 1.39900 * 109.47079 * 294.38610 * 4 3 2 6 6 F 1.39900 * 109.46860 * 54.38660 * 4 3 2 7 7 F 1.39897 * 109.47030 * 174.38864 * 4 3 2 8 8 C 1.53038 * 109.50024 * 296.19951 * 3 2 1 9 9 C 1.53046 * 109.53497 * 301.41132 * 8 3 2 10 10 C 1.53194 * 109.33920 * 298.61680 * 9 8 3 11 11 N 1.46993 * 108.73789 * 54.62250 * 10 9 8 12 12 S 1.65598 * 120.61488 * 126.38670 * 11 10 9 13 13 O 1.42100 * 104.27857 * 26.09528 * 12 11 10 14 14 O 1.42102 * 104.27719 * 153.94876 * 12 11 10 15 15 C 1.81399 * 104.44851 * 270.02319 * 12 11 10 16 16 C 1.53001 * 109.46975 * 179.97438 * 15 12 11 17 17 C 1.50698 * 109.47396 * 180.02562 * 16 15 12 18 18 H 1.08000 * 119.99741 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00451 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00297 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99644 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47166 * 90.00438 * 21 19 17 23 23 H 1.48503 * 109.47150 * 209.99849 * 21 19 17 24 24 H 1.48495 * 109.47393 * 330.00283 * 21 19 17 25 25 C 1.46930 * 118.75351 * 306.41111 * 11 10 9 26 26 H 1.09009 * 109.47411 * 53.36309 * 1 2 3 27 27 H 1.09001 * 109.46960 * 173.35913 * 1 2 3 28 28 H 1.08995 * 109.47366 * 293.35695 * 1 2 3 29 29 H 1.08998 * 109.46497 * 181.39291 * 8 3 2 30 30 H 1.08997 * 109.46238 * 61.42954 * 8 3 2 31 31 H 1.08996 * 109.49529 * 58.58774 * 9 8 3 32 32 H 1.09008 * 109.49432 * 178.65238 * 9 8 3 33 33 H 1.08995 * 109.58580 * 174.44114 * 10 9 8 34 34 H 1.09004 * 109.58543 * 294.86513 * 10 9 8 35 35 H 1.09004 * 109.47415 * 299.99571 * 15 12 11 36 36 H 1.09001 * 109.47200 * 60.00391 * 15 12 11 37 37 H 1.08999 * 109.47118 * 300.00267 * 16 15 12 38 38 H 1.09001 * 109.47190 * 59.99795 * 16 15 12 39 39 H 0.96994 * 120.00034 * 180.02562 * 20 19 17 40 40 H 1.09005 * 109.58813 * 293.81774 * 25 11 10 41 41 H 1.09002 * 109.70349 * 173.46477 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4860 2.0978 1.1994 5 9 0.1127 2.3177 1.0489 6 9 1.7164 1.3730 2.3737 7 9 2.1499 3.3271 1.2723 8 6 1.6361 2.0312 -1.2944 9 6 2.1306 1.2223 -2.4959 10 6 3.6566 1.1023 -2.4333 11 7 4.0327 0.5381 -1.1291 12 16 4.9992 -0.8035 -1.0378 13 8 5.7542 -0.7741 -2.2413 14 8 5.6346 -0.6921 0.2284 15 6 3.8395 -2.1983 -1.0476 16 6 4.6206 -3.5115 -0.9668 17 6 3.6573 -4.6703 -0.9757 18 1 2.5942 -4.4884 -1.0327 19 6 4.1329 -5.9628 -0.9098 20 7 3.2922 -6.9741 -0.9170 21 14 5.9715 -6.2774 -0.8105 22 1 6.3911 -6.3146 0.6136 23 1 6.2866 -7.5784 -1.4533 24 1 6.6986 -5.1894 -1.5125 25 6 3.5347 1.1865 0.0917 26 1 -0.3634 0.6133 -0.8247 27 1 -0.3633 -1.0208 -0.1188 28 1 -0.3634 0.4074 0.9434 29 1 2.1000 3.0174 -1.3049 30 1 0.5529 2.1390 -1.3503 31 1 1.6861 0.2274 -2.4724 32 1 1.8430 1.7277 -3.4179 33 1 4.0044 0.4455 -3.2305 34 1 4.1057 2.0889 -2.5477 35 1 3.1699 -2.1202 -0.1911 36 1 3.2560 -2.1792 -1.9681 37 1 5.2899 -3.5894 -1.8236 38 1 5.2045 -3.5309 -0.0467 39 1 3.6268 -7.8833 -0.8703 40 1 3.9739 2.1799 0.1832 41 1 3.8027 0.5870 0.9617 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614857614.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:14 Heat of formation + Delta-G solvation = -262.405931 kcal Electronic energy + Delta-G solvation = -31172.094448 eV Core-core repulsion = 26378.808642 eV Total energy + Delta-G solvation = -4793.285806 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.105 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.51305 -48.04370 -47.87719 -40.01009 -36.88400 -36.69189 -35.60229 -33.90922 -32.53404 -31.78093 -31.44130 -27.08944 -26.47728 -25.95631 -24.88548 -22.81614 -21.36127 -20.60160 -19.19220 -18.66348 -18.60715 -18.21309 -17.56787 -16.94357 -16.51273 -16.01638 -15.82910 -15.50685 -15.09613 -14.82250 -14.71364 -14.61938 -14.36857 -14.28033 -14.14381 -14.07201 -13.91938 -13.70155 -13.56588 -13.29604 -12.99165 -12.78078 -12.51617 -12.12371 -11.87460 -11.76741 -11.75757 -11.55217 -11.43318 -11.25940 -11.20684 -11.16051 -10.79859 -10.41001 -10.15060 -10.08234 -9.73769 -9.41739 -8.98438 -8.63901 -6.14239 -4.14835 0.60038 2.23675 2.78384 3.00083 3.28114 3.33602 3.35330 3.39493 3.54081 3.83178 4.14086 4.21803 4.29060 4.37910 4.43995 4.61321 4.68553 4.78924 4.98625 5.08863 5.12972 5.17761 5.22145 5.31542 5.38890 5.47521 5.50874 5.58324 5.59995 5.65950 5.88673 5.96493 6.35222 6.38407 6.56415 6.86935 6.97460 7.57593 8.39814 8.87785 9.45793 10.98234 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.015449 B = 0.003989 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.943597 B = 7018.256945 C = 7646.581406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.338 6.338 3 C 0.063 3.937 4 C 0.429 3.571 5 F -0.180 7.180 6 F -0.170 7.170 7 F -0.177 7.177 8 C -0.144 4.144 9 C -0.129 4.129 10 C 0.118 3.882 11 N -0.994 5.994 12 S 2.585 3.415 13 O -0.962 6.962 14 O -0.962 6.962 15 C -0.574 4.574 16 C -0.007 4.007 17 C -0.515 4.515 18 H 0.078 0.922 19 C 0.072 3.928 20 N -0.897 5.897 21 Si 0.868 3.132 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.262 1.262 25 C 0.137 3.863 26 H 0.054 0.946 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.125 0.875 37 H 0.031 0.969 38 H 0.027 0.973 39 H 0.266 0.734 40 H 0.099 0.901 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.428 22.243 -0.401 23.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.255 6.255 3 C 0.019 3.981 4 C 0.374 3.626 5 F -0.161 7.161 6 F -0.151 7.151 7 F -0.159 7.159 8 C -0.181 4.181 9 C -0.168 4.168 10 C -0.007 4.007 11 N -0.828 5.828 12 S 2.684 3.316 13 O -0.952 6.952 14 O -0.953 6.953 15 C -0.708 4.708 16 C -0.047 4.047 17 C -0.554 4.554 18 H 0.096 0.904 19 C -0.131 4.131 20 N -0.535 5.535 21 Si 0.694 3.306 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.187 1.187 25 C 0.010 3.990 26 H 0.073 0.927 27 H 0.119 0.881 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.091 0.909 35 H 0.150 0.850 36 H 0.143 0.857 37 H 0.049 0.951 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.117 0.883 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.354 21.951 -0.341 22.597 hybrid contribution -0.324 -0.150 0.396 0.534 sum -5.678 21.800 0.056 22.528 Atomic orbital electron populations 1.23341 0.79949 1.04533 1.01383 1.88213 1.20855 1.22369 1.94108 1.23230 0.97543 0.85834 0.91510 1.21464 0.75883 0.78959 0.86341 1.93151 1.32356 1.94903 1.95716 1.93241 1.94106 1.77210 1.50585 1.93184 1.80441 1.45563 1.96710 1.22108 1.02899 0.99904 0.93238 1.21860 0.96221 1.01760 0.96970 1.21484 0.94561 1.00475 0.84154 1.57880 1.68930 1.45608 1.10408 1.05918 0.76129 0.75353 0.74159 1.93545 1.67974 1.86093 1.47586 1.93545 1.73155 1.85537 1.43034 1.30260 1.15043 1.14093 1.11359 1.19422 0.96393 0.91228 0.97633 1.20837 0.94292 0.88532 1.51756 0.90367 1.24977 0.97813 0.96060 0.94236 1.69879 1.34490 0.98956 1.50157 0.86946 0.86117 0.78315 0.79194 1.19681 1.20795 1.18655 1.21318 0.87115 1.01467 0.89113 0.92732 0.88072 0.92590 0.89349 0.89845 0.89886 0.89737 0.88249 0.90861 0.85001 0.85696 0.95118 0.95504 0.92436 0.88293 0.86968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 9.58 101.05 0.97 1.00 16 2 O -0.34 -3.95 9.40 -35.23 -0.33 -4.28 16 3 C 0.06 0.64 0.37 -90.50 -0.03 0.61 16 4 C 0.43 4.38 2.02 37.16 0.08 4.46 16 5 F -0.18 -1.73 13.56 2.25 0.03 -1.70 16 6 F -0.17 -2.03 16.98 2.25 0.04 -1.99 16 7 F -0.18 -1.72 16.22 2.25 0.04 -1.68 16 8 C -0.14 -1.10 4.17 -26.69 -0.11 -1.21 16 9 C -0.13 -1.01 5.94 -26.61 -0.16 -1.17 16 10 C 0.12 1.15 6.32 -3.67 -0.02 1.13 16 11 N -0.99 -12.51 3.16 -113.47 -0.36 -12.87 16 12 S 2.59 44.14 5.41 -107.50 -0.58 43.56 16 13 O -0.96 -18.38 16.73 -57.54 -0.96 -19.34 16 14 O -0.96 -18.77 16.73 -57.54 -0.96 -19.73 16 15 C -0.57 -10.64 6.12 37.16 0.23 -10.41 16 16 C -0.01 -0.17 4.05 -27.88 -0.11 -0.29 16 17 C -0.52 -14.35 9.66 -34.44 -0.33 -14.69 16 18 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 19 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 20 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 21 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 25 C 0.14 1.55 5.04 -3.71 -0.02 1.53 16 26 H 0.05 0.41 6.25 -51.92 -0.32 0.09 16 27 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.52 6.01 -51.93 -0.31 0.21 16 29 H 0.09 0.56 7.98 -51.93 -0.41 0.15 16 30 H 0.08 0.55 6.04 -51.93 -0.31 0.24 16 31 H 0.08 0.74 7.61 -51.93 -0.40 0.34 16 32 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 33 H 0.10 1.01 7.10 -51.93 -0.37 0.64 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.13 2.34 8.14 -51.92 -0.42 1.92 16 36 H 0.12 2.10 8.14 -51.92 -0.42 1.67 16 37 H 0.03 0.73 7.20 -51.93 -0.37 0.35 16 38 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.10 0.91 7.52 -51.93 -0.39 0.52 16 41 H 0.11 1.40 7.06 -51.93 -0.37 1.04 16 LS Contribution 346.47 15.07 5.22 5.22 Total: -1.00 -33.98 346.47 -6.74 -40.72 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.35 Total: -1.39 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 0.38 Total: -17.07 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.41 Total: -39.17 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -2.26 Total: -43.35 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.11 Total: -5.38 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Atomic # 16 Polarization: 44.14 SS G_CDS: -0.58 Total: 43.56 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.98 -6.74 -40.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614857614.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -221.687 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -262.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds