Wall clock time and date at job start Wed Apr 1 2020 04:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42899 * 114.00056 * 2 1 4 4 C 1.53009 * 109.49671 * 56.26131 * 3 2 1 5 5 F 1.39900 * 109.47079 * 294.38610 * 4 3 2 6 6 F 1.39900 * 109.46860 * 54.38660 * 4 3 2 7 7 F 1.39897 * 109.47030 * 174.38864 * 4 3 2 8 8 C 1.53038 * 109.50024 * 296.19951 * 3 2 1 9 9 C 1.53046 * 109.53497 * 301.41132 * 8 3 2 10 10 C 1.53194 * 109.33920 * 298.61680 * 9 8 3 11 11 N 1.46993 * 108.73789 * 54.62250 * 10 9 8 12 12 S 1.65598 * 120.61488 * 126.38670 * 11 10 9 13 13 O 1.42100 * 104.27857 * 26.09528 * 12 11 10 14 14 O 1.42102 * 104.27719 * 153.94876 * 12 11 10 15 15 C 1.81399 * 104.44851 * 270.02319 * 12 11 10 16 16 C 1.53001 * 109.46975 * 179.97438 * 15 12 11 17 17 C 1.50698 * 109.47396 * 180.02562 * 16 15 12 18 18 H 1.08000 * 119.99741 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00451 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00297 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99644 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47166 * 90.00438 * 21 19 17 23 23 H 1.48503 * 109.47150 * 209.99849 * 21 19 17 24 24 H 1.48495 * 109.47393 * 330.00283 * 21 19 17 25 25 C 1.46930 * 118.75351 * 306.41111 * 11 10 9 26 26 H 1.09009 * 109.47411 * 53.36309 * 1 2 3 27 27 H 1.09001 * 109.46960 * 173.35913 * 1 2 3 28 28 H 1.08995 * 109.47366 * 293.35695 * 1 2 3 29 29 H 1.08998 * 109.46497 * 181.39291 * 8 3 2 30 30 H 1.08997 * 109.46238 * 61.42954 * 8 3 2 31 31 H 1.08996 * 109.49529 * 58.58774 * 9 8 3 32 32 H 1.09008 * 109.49432 * 178.65238 * 9 8 3 33 33 H 1.08995 * 109.58580 * 174.44114 * 10 9 8 34 34 H 1.09004 * 109.58543 * 294.86513 * 10 9 8 35 35 H 1.09004 * 109.47415 * 299.99571 * 15 12 11 36 36 H 1.09001 * 109.47200 * 60.00391 * 15 12 11 37 37 H 1.08999 * 109.47118 * 300.00267 * 16 15 12 38 38 H 1.09001 * 109.47190 * 59.99795 * 16 15 12 39 39 H 0.96994 * 120.00034 * 180.02562 * 20 19 17 40 40 H 1.09005 * 109.58813 * 293.81774 * 25 11 10 41 41 H 1.09002 * 109.70349 * 173.46477 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4860 2.0978 1.1994 5 9 0.1127 2.3177 1.0489 6 9 1.7164 1.3730 2.3737 7 9 2.1499 3.3271 1.2723 8 6 1.6361 2.0312 -1.2944 9 6 2.1306 1.2223 -2.4959 10 6 3.6566 1.1023 -2.4333 11 7 4.0327 0.5381 -1.1291 12 16 4.9992 -0.8035 -1.0378 13 8 5.7542 -0.7741 -2.2413 14 8 5.6346 -0.6921 0.2284 15 6 3.8395 -2.1983 -1.0476 16 6 4.6206 -3.5115 -0.9668 17 6 3.6573 -4.6703 -0.9757 18 1 2.5942 -4.4884 -1.0327 19 6 4.1329 -5.9628 -0.9098 20 7 3.2922 -6.9741 -0.9170 21 14 5.9715 -6.2774 -0.8105 22 1 6.3911 -6.3146 0.6136 23 1 6.2866 -7.5784 -1.4533 24 1 6.6986 -5.1894 -1.5125 25 6 3.5347 1.1865 0.0917 26 1 -0.3634 0.6133 -0.8247 27 1 -0.3633 -1.0208 -0.1188 28 1 -0.3634 0.4074 0.9434 29 1 2.1000 3.0174 -1.3049 30 1 0.5529 2.1390 -1.3503 31 1 1.6861 0.2274 -2.4724 32 1 1.8430 1.7277 -3.4179 33 1 4.0044 0.4455 -3.2305 34 1 4.1057 2.0889 -2.5477 35 1 3.1699 -2.1202 -0.1911 36 1 3.2560 -2.1792 -1.9681 37 1 5.2899 -3.5894 -1.8236 38 1 5.2045 -3.5309 -0.0467 39 1 3.6268 -7.8833 -0.8703 40 1 3.9739 2.1799 0.1832 41 1 3.8027 0.5870 0.9617 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614857614.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:13 Heat of formation + Delta-G solvation = -287.303424 kcal Electronic energy + Delta-G solvation = -31173.174084 eV Core-core repulsion = 26378.808642 eV Total energy + Delta-G solvation = -4794.365442 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.105 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.30716 -48.81068 -48.71253 -40.79347 -38.28818 -37.60473 -37.05369 -35.87401 -33.45470 -33.32671 -32.55246 -27.87064 -27.83679 -27.26422 -25.75332 -23.61952 -23.07736 -21.54592 -20.20182 -19.58999 -19.46705 -19.38862 -18.96193 -18.39321 -17.51066 -17.11417 -16.86797 -16.71075 -16.36048 -15.95557 -15.74826 -15.53869 -15.47196 -15.20141 -15.14711 -14.97199 -14.90198 -14.83180 -14.72359 -14.47176 -14.07131 -13.78379 -13.69801 -13.46229 -13.25447 -13.17527 -13.06300 -12.94622 -12.93911 -12.38602 -12.24091 -12.15236 -12.04477 -11.92442 -11.71275 -11.55001 -11.21295 -10.84630 -10.83228 -10.05660 -8.35220 -6.40380 -0.76741 1.32399 1.33850 1.37847 1.44087 1.69388 2.22561 2.30423 2.54914 2.70796 2.81471 2.98682 3.06943 3.15108 3.48864 3.49500 3.75529 3.99188 4.01032 4.08399 4.12562 4.30125 4.37493 4.39037 4.47927 4.58176 4.61027 4.74678 4.82545 4.87517 4.97863 5.04910 5.10111 5.17368 5.35327 5.48747 5.50373 5.81270 6.19227 6.65289 7.23638 8.80469 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.015449 B = 0.003989 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.943597 B = 7018.256945 C = 7646.581406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.362 6.362 3 C 0.061 3.939 4 C 0.430 3.570 5 F -0.175 7.175 6 F -0.185 7.185 7 F -0.173 7.173 8 C -0.141 4.141 9 C -0.125 4.125 10 C 0.106 3.894 11 N -0.985 5.985 12 S 2.614 3.386 13 O -0.980 6.980 14 O -0.987 6.987 15 C -0.581 4.581 16 C -0.016 4.016 17 C -0.523 4.523 18 H 0.048 0.952 19 C 0.014 3.986 20 N -0.940 5.940 21 Si 0.923 3.077 22 H -0.262 1.262 23 H -0.273 1.273 24 H -0.249 1.249 25 C 0.127 3.873 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.033 0.967 38 H 0.027 0.973 39 H 0.269 0.731 40 H 0.126 0.874 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.978 24.755 -1.220 25.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 O -0.281 6.281 3 C 0.018 3.982 4 C 0.375 3.625 5 F -0.157 7.157 6 F -0.166 7.166 7 F -0.154 7.154 8 C -0.178 4.178 9 C -0.164 4.164 10 C -0.017 4.017 11 N -0.821 5.821 12 S 2.712 3.288 13 O -0.970 6.970 14 O -0.978 6.978 15 C -0.712 4.712 16 C -0.055 4.055 17 C -0.562 4.562 18 H 0.066 0.934 19 C -0.184 4.184 20 N -0.580 5.580 21 Si 0.746 3.254 22 H -0.187 1.187 23 H -0.198 1.198 24 H -0.172 1.172 25 C 0.001 3.999 26 H 0.094 0.906 27 H 0.114 0.886 28 H 0.073 0.927 29 H 0.127 0.873 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.133 0.867 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.152 0.848 36 H 0.156 0.844 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.078 0.922 40 H 0.144 0.856 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.918 24.453 -1.163 24.969 hybrid contribution -0.585 -0.832 0.654 1.209 sum -5.503 23.621 -0.509 24.259 Atomic orbital electron populations 1.23433 0.79081 1.04779 1.02223 1.88180 1.21963 1.23611 1.94310 1.23322 0.96535 0.85638 0.92752 1.21488 0.76127 0.79011 0.85855 1.93158 1.32004 1.94865 1.95640 1.93215 1.94227 1.77650 1.51523 1.93192 1.80355 1.45189 1.96661 1.22185 1.04004 1.00325 0.91316 1.21867 0.94491 1.01565 0.98462 1.21865 0.96283 1.01414 0.82160 1.57500 1.68694 1.43668 1.12285 1.04777 0.75698 0.75310 0.73053 1.93516 1.68689 1.86543 1.48262 1.93509 1.73996 1.85992 1.44271 1.30266 1.15553 1.13198 1.12190 1.19371 0.96129 0.92419 0.97566 1.21141 0.93875 0.90267 1.50893 0.93365 1.25851 1.02557 0.95935 0.94056 1.70006 1.36713 0.99547 1.51770 0.86051 0.80592 0.78890 0.79875 1.18694 1.19786 1.17235 1.21551 0.88370 1.02235 0.87790 0.90569 0.88589 0.92679 0.87280 0.88481 0.91287 0.86681 0.88832 0.88080 0.84847 0.84444 0.94924 0.95478 0.92161 0.85594 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.58 113.37 1.09 1.09 16 2 O -0.36 -8.14 9.40 -148.98 -1.40 -9.54 16 3 C 0.06 1.12 0.37 -10.72 0.00 1.12 16 4 C 0.43 8.00 2.02 71.99 0.15 8.14 16 5 F -0.18 -3.01 13.56 44.97 0.61 -2.40 16 6 F -0.18 -4.30 16.98 44.97 0.76 -3.53 16 7 F -0.17 -2.91 16.22 44.97 0.73 -2.18 16 8 C -0.14 -1.64 4.17 30.62 0.13 -1.51 16 9 C -0.13 -1.53 5.94 30.67 0.18 -1.35 16 10 C 0.11 1.75 6.32 86.35 0.55 2.30 16 11 N -0.98 -22.86 3.16 -512.90 -1.62 -24.48 16 12 S 2.61 86.87 5.41 -56.49 -0.31 86.57 16 13 O -0.98 -36.18 16.73 -127.65 -2.14 -38.31 16 14 O -0.99 -37.92 16.73 -127.65 -2.14 -40.05 16 15 C -0.58 -21.60 6.12 71.98 0.44 -21.16 16 16 C -0.02 -0.75 4.05 29.85 0.12 -0.63 16 17 C -0.52 -29.87 9.66 25.60 0.25 -29.63 16 18 H 0.05 2.95 7.99 -2.91 -0.02 2.93 16 19 C 0.01 0.84 5.47 84.65 0.46 1.30 16 20 N -0.94 -58.16 13.96 21.45 0.30 -57.86 16 21 Si 0.92 44.18 27.47 68.60 1.88 46.07 16 22 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 25 C 0.13 2.64 5.04 86.36 0.44 3.07 16 26 H 0.08 0.99 6.25 -2.38 -0.01 0.97 16 27 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.05 0.97 6.01 -2.39 -0.01 0.96 16 29 H 0.11 0.87 7.98 -2.39 -0.02 0.85 16 30 H 0.10 0.91 6.04 -2.39 -0.01 0.89 16 31 H 0.07 1.07 7.61 -2.39 -0.02 1.05 16 32 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.09 1.68 7.10 -2.39 -0.02 1.67 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 35 H 0.13 4.85 8.14 -2.39 -0.02 4.83 16 36 H 0.14 4.63 8.14 -2.39 -0.02 4.61 16 37 H 0.03 1.53 7.20 -2.39 -0.02 1.51 16 38 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 39 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 40 H 0.13 1.94 7.52 -2.38 -0.02 1.92 16 41 H 0.10 2.33 7.06 -2.39 -0.02 2.31 16 Total: -1.00 -74.15 346.47 1.48 -72.66 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 1.01 Total: 10.31 kcal Atomic # 6 Polarization: -41.04 SS G_CDS: 3.79 Total: -37.25 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -1.32 Total: -82.34 kcal Atomic # 8 Polarization: -82.23 SS G_CDS: -5.67 Total: -87.90 kcal Atomic # 9 Polarization: -10.21 SS G_CDS: 2.10 Total: -8.11 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.07 kcal Atomic # 16 Polarization: 86.87 SS G_CDS: -0.31 Total: 86.57 kcal Total: -74.15 1.48 -72.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614857614.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -214.640 kcal (2) G-P(sol) polarization free energy of solvation -74.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -288.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -287.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds