Wall clock time and date at job start Wed Apr 1 2020 02:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46897 * 2 1 4 4 C 1.52996 * 109.47413 * 120.00083 * 2 1 3 5 5 C 1.52997 * 109.47131 * 174.99889 * 4 2 1 6 6 N 1.46506 * 109.47289 * 180.02562 * 5 4 2 7 7 C 1.46495 * 119.99753 * 275.00325 * 6 5 4 8 8 C 1.50698 * 109.47121 * 84.99977 * 7 6 5 9 9 H 1.07997 * 120.00111 * 359.97438 * 8 7 6 10 10 C 1.37885 * 119.99987 * 179.97438 * 8 7 6 11 11 N 1.31511 * 119.99629 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99848 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.47711 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.47098 * 119.99996 * 12 10 8 15 15 H 1.48497 * 109.47023 * 239.99479 * 12 10 8 16 16 S 1.65602 * 120.00006 * 94.99676 * 6 5 4 17 17 O 1.42097 * 106.40599 * 203.54158 * 16 6 5 18 18 O 1.42097 * 106.40158 * 336.46648 * 16 6 5 19 19 C 1.76208 * 107.21383 * 90.00215 * 16 6 5 20 20 C 1.35168 * 125.60734 * 90.00325 * 19 16 6 21 21 C 1.40305 * 107.12823 * 180.02562 * 20 19 16 22 22 C 1.36642 * 106.69864 * 359.97438 * 21 20 19 23 23 C 1.46475 * 125.99314 * 180.02562 * 22 21 20 24 24 O 1.21630 * 119.99974 * 0.02562 * 23 22 21 25 25 O 1.34893 * 120.00091 * 179.97438 * 23 22 21 26 26 O 1.33911 * 125.60943 * 269.69208 * 19 16 6 27 27 H 1.09001 * 109.46843 * 299.99659 * 1 2 3 28 28 H 1.09002 * 109.47423 * 59.99781 * 1 2 3 29 29 H 1.08998 * 109.46646 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47219 * 240.00655 * 2 1 3 31 31 H 1.09001 * 109.47096 * 60.00495 * 3 2 1 32 32 H 1.09001 * 109.47183 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47256 * 300.00321 * 3 2 1 34 34 H 1.09001 * 109.46997 * 55.00316 * 4 2 1 35 35 H 1.08996 * 109.47452 * 294.99889 * 4 2 1 36 36 H 1.09001 * 109.47289 * 60.00050 * 5 4 2 37 37 H 1.09004 * 109.47261 * 300.00306 * 5 4 2 38 38 H 1.09002 * 109.46665 * 204.99493 * 7 6 5 39 39 H 1.08998 * 109.47564 * 324.99734 * 7 6 5 40 40 H 0.97007 * 119.99956 * 180.02562 * 11 10 8 41 41 H 1.08002 * 126.43586 * 359.97438 * 20 19 16 42 42 H 1.08001 * 126.64844 * 180.02562 * 21 20 19 43 43 H 0.96697 * 117.00175 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1878 6 7 4.0533 -1.5222 2.3837 7 6 4.2974 -0.7693 3.6164 8 6 3.0109 -0.6431 4.3911 9 1 2.1023 -1.0796 4.0037 10 6 2.9940 0.0298 5.5945 11 7 4.1006 0.5609 6.0664 12 14 1.3992 0.1868 6.5543 13 1 0.3062 -0.4919 5.8129 14 1 1.5600 -0.4455 7.8884 15 1 1.0634 1.6233 6.7247 16 16 4.3292 -3.1545 2.3420 17 8 4.2436 -3.6105 3.6851 18 8 3.5221 -3.6712 1.2928 19 6 6.0030 -3.3879 1.8430 20 6 7.0678 -3.4654 2.6720 21 6 8.2035 -3.6518 1.8695 22 6 7.7689 -3.6796 0.5743 23 6 8.6096 -3.8548 -0.6122 24 8 9.8119 -3.9930 -0.4907 25 8 8.0503 -3.8638 -1.8398 26 8 6.4286 -3.5234 0.5806 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6055 -1.7198 1.2950 35 1 1.7518 -0.1584 2.1369 36 1 3.9995 0.1675 1.1419 37 1 3.8532 -1.3939 0.3000 38 1 5.0363 -1.2939 4.2222 39 1 4.6707 0.2241 3.3676 40 1 4.0888 1.0340 6.9132 41 1 7.0482 -3.3960 3.7496 42 1 9.2234 -3.7544 2.2096 43 1 8.6455 -3.9828 -2.5925 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736427841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:00 Heat of formation + Delta-G solvation = -154.867685 kcal Electronic energy + Delta-G solvation = -29098.570563 eV Core-core repulsion = 24851.804706 eV Total energy + Delta-G solvation = -4246.765857 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.117 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.94672 -40.28750 -37.29940 -36.86047 -36.58835 -35.48948 -34.88174 -33.44778 -32.52495 -30.70637 -28.96660 -26.92893 -26.70711 -25.15251 -23.09425 -22.46957 -22.16801 -21.23260 -19.63723 -19.34588 -18.66704 -17.95863 -17.31729 -17.16168 -16.61750 -16.39984 -15.60839 -15.48986 -14.90617 -14.60494 -14.23721 -14.06262 -13.81828 -13.71325 -13.50551 -13.31051 -13.04046 -12.85424 -12.46298 -12.04987 -12.01057 -11.95861 -11.79405 -11.71765 -11.57208 -11.45329 -11.29974 -11.25349 -11.08956 -10.87792 -10.72827 -10.50519 -10.41152 -10.33382 -10.20632 -9.85394 -9.65611 -9.40126 -8.51015 -8.25698 -6.13440 -4.16956 0.21626 0.58262 1.68521 2.08735 2.50379 2.95843 3.27353 3.35867 3.38985 3.44786 4.01040 4.39114 4.52556 4.66420 4.85846 5.07731 5.15363 5.19685 5.20368 5.22636 5.26024 5.40343 5.49604 5.83787 5.86764 5.88872 5.93076 5.93651 5.98470 6.07940 6.11251 6.24239 6.35570 6.38080 6.45571 6.54526 6.76060 6.97697 7.08110 7.24416 7.37568 7.44044 7.84078 8.09857 8.85400 9.48426 10.95391 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.010667 B = 0.004043 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.259379 B = 6923.451963 C = 8509.969026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.137 4.137 5 C 0.132 3.868 6 N -0.968 5.968 7 C 0.252 3.748 8 C -0.526 4.526 9 H 0.067 0.933 10 C 0.064 3.936 11 N -0.895 5.895 12 Si 0.895 3.105 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.284 1.284 16 S 2.694 3.306 17 O -0.912 6.912 18 O -0.948 6.948 19 C -0.525 4.525 20 C -0.109 4.109 21 C -0.120 4.120 22 C -0.038 4.038 23 C 0.575 3.425 24 O -0.489 6.489 25 O -0.498 6.498 26 O -0.094 6.094 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.263 0.737 41 H 0.182 0.818 42 H 0.175 0.825 43 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.609 -3.750 -13.392 14.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.206 4.206 4 C -0.177 4.177 5 C 0.006 3.994 6 N -0.810 5.810 7 C 0.130 3.870 8 C -0.565 4.565 9 H 0.085 0.915 10 C -0.138 4.138 11 N -0.534 5.534 12 Si 0.722 3.278 13 H -0.195 1.195 14 H -0.208 1.208 15 H -0.210 1.210 16 S 2.773 3.227 17 O -0.902 6.902 18 O -0.938 6.938 19 C -0.652 4.652 20 C -0.129 4.129 21 C -0.140 4.140 22 C -0.092 4.092 23 C 0.418 3.582 24 O -0.378 6.378 25 O -0.310 6.310 26 O 0.013 5.987 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.199 0.801 42 H 0.192 0.808 43 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 4.104 -4.305 -12.993 14.290 hybrid contribution 0.558 0.297 0.203 0.664 sum 4.662 -4.009 -12.790 14.192 Atomic orbital electron populations 1.21819 0.95572 1.01566 1.01325 1.21069 0.95574 0.96239 0.98482 1.21899 1.01166 0.96114 1.01394 1.22175 0.95269 1.01487 0.98721 1.21270 0.94890 0.97973 0.85250 1.57539 1.77010 1.26186 1.20219 1.19255 0.97610 0.92028 0.78084 1.21498 0.95213 1.35104 1.04685 0.91503 1.24909 0.96563 0.95243 0.97105 1.69920 1.26591 1.36339 1.20502 0.86489 0.83539 0.77657 0.80088 1.19507 1.20836 1.21012 1.02832 0.72062 0.73945 0.73868 1.93688 1.83665 1.79724 1.33089 1.93557 1.63613 1.78402 1.58203 1.37506 1.25916 1.15598 0.86222 1.22055 0.90128 0.98328 1.02384 1.22193 1.01386 1.00406 0.89979 1.21242 0.82796 1.11445 0.93716 1.18780 0.84705 0.72857 0.81846 1.91021 1.14085 1.46075 1.86633 1.84698 1.45617 1.84367 1.16334 1.84292 1.20267 1.67162 1.26967 0.92555 0.93289 0.92813 0.91589 0.92279 0.92501 0.93489 0.91700 0.89047 0.90293 0.91508 0.94220 0.94117 0.92685 0.80067 0.80763 0.71945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.19 37.16 0.34 -1.46 16 2 C -0.09 -1.26 2.92 -90.62 -0.26 -1.52 16 3 C -0.15 -1.84 8.95 37.16 0.33 -1.51 16 4 C -0.14 -2.26 4.60 -26.73 -0.12 -2.38 16 5 C 0.13 2.17 5.12 -4.04 -0.02 2.14 16 6 N -0.97 -18.53 2.80 -115.66 -0.32 -18.85 16 7 C 0.25 5.73 5.12 -5.20 -0.03 5.70 16 8 C -0.53 -13.44 8.41 -34.44 -0.29 -13.73 16 9 H 0.07 1.70 6.89 -52.49 -0.36 1.34 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 12 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 13 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 16 S 2.69 50.79 5.75 -107.50 -0.62 50.17 16 17 O -0.91 -19.67 16.80 -57.17 -0.96 -20.64 16 18 O -0.95 -18.73 16.99 -57.27 -0.97 -19.70 16 19 C -0.53 -8.64 7.35 29.64 0.22 -8.43 16 20 C -0.11 -1.59 10.58 -39.90 -0.42 -2.01 16 21 C -0.12 -1.55 10.62 -39.38 -0.42 -1.97 16 22 C -0.04 -0.53 7.18 -36.84 -0.26 -0.80 16 23 C 0.57 6.90 8.30 34.05 0.28 7.18 16 24 O -0.49 -6.46 17.65 -19.37 -0.34 -6.80 16 25 O -0.50 -4.59 13.44 -42.46 -0.57 -5.16 16 26 O -0.09 -1.50 10.67 4.69 0.05 -1.45 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.69 6.59 -51.93 -0.34 1.34 16 36 H 0.08 1.20 6.43 -51.93 -0.33 0.86 16 37 H 0.07 0.98 7.61 -51.93 -0.40 0.59 16 38 H 0.04 0.94 7.61 -51.93 -0.40 0.55 16 39 H 0.04 0.94 8.00 -51.93 -0.42 0.53 16 40 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.18 2.38 8.06 -52.49 -0.42 1.95 16 42 H 0.17 1.77 8.06 -52.49 -0.42 1.34 16 43 H 0.42 1.44 9.11 45.56 0.42 1.86 16 LS Contribution 382.29 15.07 5.76 5.76 Total: -1.00 -32.49 382.29 -8.12 -40.61 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -5.11 Total: 1.40 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -0.75 Total: -17.16 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.41 Total: -42.72 kcal Atomic # 8 Polarization: -50.96 SS G_CDS: -2.80 Total: -53.76 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 50.79 SS G_CDS: -0.62 Total: 50.17 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.49 -8.12 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736427841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.256 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds