Wall clock time and date at job start Wed Apr 1 2020 02:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46897 * 2 1 4 4 C 1.52996 * 109.47413 * 120.00083 * 2 1 3 5 5 C 1.52997 * 109.47131 * 174.99889 * 4 2 1 6 6 N 1.46506 * 109.47289 * 180.02562 * 5 4 2 7 7 C 1.46495 * 119.99753 * 275.00325 * 6 5 4 8 8 C 1.50698 * 109.47121 * 84.99977 * 7 6 5 9 9 H 1.07997 * 120.00111 * 359.97438 * 8 7 6 10 10 C 1.37885 * 119.99987 * 179.97438 * 8 7 6 11 11 N 1.31511 * 119.99629 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99848 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.47711 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.47098 * 119.99996 * 12 10 8 15 15 H 1.48497 * 109.47023 * 239.99479 * 12 10 8 16 16 S 1.65602 * 120.00006 * 94.99676 * 6 5 4 17 17 O 1.42097 * 106.40599 * 203.54158 * 16 6 5 18 18 O 1.42097 * 106.40158 * 336.46648 * 16 6 5 19 19 C 1.76208 * 107.21383 * 90.00215 * 16 6 5 20 20 C 1.35168 * 125.60734 * 90.00325 * 19 16 6 21 21 C 1.40305 * 107.12823 * 180.02562 * 20 19 16 22 22 C 1.36642 * 106.69864 * 359.97438 * 21 20 19 23 23 C 1.46475 * 125.99314 * 180.02562 * 22 21 20 24 24 O 1.21630 * 119.99974 * 0.02562 * 23 22 21 25 25 O 1.34893 * 120.00091 * 179.97438 * 23 22 21 26 26 O 1.33911 * 125.60943 * 269.69208 * 19 16 6 27 27 H 1.09001 * 109.46843 * 299.99659 * 1 2 3 28 28 H 1.09002 * 109.47423 * 59.99781 * 1 2 3 29 29 H 1.08998 * 109.46646 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47219 * 240.00655 * 2 1 3 31 31 H 1.09001 * 109.47096 * 60.00495 * 3 2 1 32 32 H 1.09001 * 109.47183 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47256 * 300.00321 * 3 2 1 34 34 H 1.09001 * 109.46997 * 55.00316 * 4 2 1 35 35 H 1.08996 * 109.47452 * 294.99889 * 4 2 1 36 36 H 1.09001 * 109.47289 * 60.00050 * 5 4 2 37 37 H 1.09004 * 109.47261 * 300.00306 * 5 4 2 38 38 H 1.09002 * 109.46665 * 204.99493 * 7 6 5 39 39 H 1.08998 * 109.47564 * 324.99734 * 7 6 5 40 40 H 0.97007 * 119.99956 * 180.02562 * 11 10 8 41 41 H 1.08002 * 126.43586 * 359.97438 * 20 19 16 42 42 H 1.08001 * 126.64844 * 180.02562 * 21 20 19 43 43 H 0.96697 * 117.00175 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1878 6 7 4.0533 -1.5222 2.3837 7 6 4.2974 -0.7693 3.6164 8 6 3.0109 -0.6431 4.3911 9 1 2.1023 -1.0796 4.0037 10 6 2.9940 0.0298 5.5945 11 7 4.1006 0.5609 6.0664 12 14 1.3992 0.1868 6.5543 13 1 0.3062 -0.4919 5.8129 14 1 1.5600 -0.4455 7.8884 15 1 1.0634 1.6233 6.7247 16 16 4.3292 -3.1545 2.3420 17 8 4.2436 -3.6105 3.6851 18 8 3.5221 -3.6712 1.2928 19 6 6.0030 -3.3879 1.8430 20 6 7.0678 -3.4654 2.6720 21 6 8.2035 -3.6518 1.8695 22 6 7.7689 -3.6796 0.5743 23 6 8.6096 -3.8548 -0.6122 24 8 9.8119 -3.9930 -0.4907 25 8 8.0503 -3.8638 -1.8398 26 8 6.4286 -3.5234 0.5806 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6055 -1.7198 1.2950 35 1 1.7518 -0.1584 2.1369 36 1 3.9995 0.1675 1.1419 37 1 3.8532 -1.3939 0.3000 38 1 5.0363 -1.2939 4.2222 39 1 4.6707 0.2241 3.3676 40 1 4.0888 1.0340 6.9132 41 1 7.0482 -3.3960 3.7496 42 1 9.2234 -3.7544 2.2096 43 1 8.6455 -3.9828 -2.5925 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736427841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:59 Heat of formation + Delta-G solvation = -177.352138 kcal Electronic energy + Delta-G solvation = -29099.545562 eV Core-core repulsion = 24851.804706 eV Total energy + Delta-G solvation = -4247.740856 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.117 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.09252 -41.19078 -38.68261 -38.40559 -37.43651 -37.07773 -36.28449 -34.58872 -34.43062 -31.83240 -30.44656 -28.46622 -27.89851 -26.21194 -24.76439 -23.75297 -23.54963 -22.27079 -20.80241 -20.59829 -19.73634 -19.15667 -18.66680 -18.59198 -18.15862 -17.80891 -17.21436 -16.48943 -16.39112 -16.07829 -15.50368 -15.28788 -14.98764 -14.92206 -14.50697 -14.45811 -14.42490 -14.39993 -13.94006 -13.59197 -13.37357 -13.33322 -13.08655 -13.01455 -12.87515 -12.85783 -12.81038 -12.67547 -12.43513 -12.31565 -12.25493 -11.96168 -11.74934 -11.54477 -11.50393 -11.32055 -11.20513 -10.59441 -10.52335 -9.86964 -8.15180 -6.23375 -1.02647 -0.76667 0.57283 1.07107 1.42149 1.45898 1.51051 1.55786 1.83928 2.08552 2.44690 2.56959 3.17833 3.31405 3.45063 3.83724 3.85928 3.95937 4.03875 4.14779 4.16028 4.23613 4.44309 4.63217 4.66237 4.73924 4.82510 4.90729 4.94054 5.06186 5.09753 5.15262 5.19811 5.23999 5.31116 5.32726 5.43100 5.47471 5.59889 5.70958 5.75753 5.88546 6.14506 6.67062 6.84026 7.44394 8.93166 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.010667 B = 0.004043 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.259379 B = 6923.451963 C = 8509.969026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.146 4.146 4 C -0.136 4.136 5 C 0.124 3.876 6 N -0.973 5.973 7 C 0.265 3.735 8 C -0.533 4.533 9 H 0.061 0.939 10 C 0.018 3.982 11 N -0.924 5.924 12 Si 0.946 3.054 13 H -0.268 1.268 14 H -0.283 1.283 15 H -0.276 1.276 16 S 2.714 3.286 17 O -0.947 6.947 18 O -0.962 6.962 19 C -0.549 4.549 20 C -0.102 4.102 21 C -0.114 4.114 22 C -0.040 4.040 23 C 0.585 3.415 24 O -0.501 6.501 25 O -0.494 6.494 26 O -0.106 6.106 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.027 0.973 39 H 0.035 0.965 40 H 0.265 0.735 41 H 0.192 0.808 42 H 0.205 0.795 43 H 0.446 0.554 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.259 -3.681 -15.081 16.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.203 4.203 4 C -0.175 4.175 5 C -0.001 4.001 6 N -0.813 5.813 7 C 0.142 3.858 8 C -0.572 4.572 9 H 0.079 0.921 10 C -0.181 4.181 11 N -0.564 5.564 12 Si 0.772 3.228 13 H -0.193 1.193 14 H -0.209 1.209 15 H -0.201 1.201 16 S 2.797 3.203 17 O -0.938 6.938 18 O -0.952 6.952 19 C -0.680 4.680 20 C -0.123 4.123 21 C -0.134 4.134 22 C -0.094 4.094 23 C 0.428 3.572 24 O -0.391 6.391 25 O -0.309 6.309 26 O 0.001 5.999 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.045 0.955 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.209 0.791 42 H 0.222 0.778 43 H 0.310 0.690 Dipole moment (debyes) X Y Z Total from point charges 4.702 -4.229 -14.716 16.017 hybrid contribution 0.463 0.211 0.585 0.775 sum 5.165 -4.018 -14.131 15.573 Atomic orbital electron populations 1.21821 0.94860 1.01622 1.01948 1.21072 0.96220 0.96593 0.97178 1.21879 1.01305 0.95393 1.01771 1.22133 0.95368 1.00620 0.99427 1.21533 0.94921 0.98810 0.84821 1.57393 1.77834 1.26070 1.20026 1.18868 0.96031 0.91849 0.79076 1.21804 0.96092 1.34349 1.04972 0.92095 1.25586 0.99130 0.95308 0.98124 1.69999 1.28089 1.37309 1.20993 0.85681 0.80512 0.77923 0.78681 1.19276 1.20877 1.20129 1.01783 0.72287 0.73352 0.72894 1.93640 1.84818 1.80312 1.34993 1.93526 1.64952 1.78512 1.58229 1.36688 1.25099 1.18980 0.87241 1.22363 0.90271 0.96628 1.03009 1.22546 1.02185 0.99381 0.89290 1.21808 0.82155 1.10241 0.95214 1.18462 0.84020 0.72567 0.82172 1.91027 1.14389 1.46770 1.86906 1.84651 1.46350 1.83573 1.16304 1.84258 1.21394 1.67798 1.26470 0.93490 0.91095 0.93087 0.90155 0.93665 0.92290 0.91321 0.93211 0.91646 0.89039 0.89504 0.95516 0.94699 0.92579 0.79088 0.77774 0.68955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.19 71.98 0.66 -2.76 16 2 C -0.09 -2.33 2.92 -10.79 -0.03 -2.36 16 3 C -0.15 -3.40 8.95 71.98 0.64 -2.76 16 4 C -0.14 -4.51 4.60 30.59 0.14 -4.37 16 5 C 0.12 4.04 5.12 86.38 0.44 4.48 16 6 N -0.97 -37.80 2.80 -519.84 -1.45 -39.26 16 7 C 0.26 12.32 5.12 85.63 0.44 12.76 16 8 C -0.53 -27.83 8.41 25.60 0.22 -27.61 16 9 H 0.06 3.19 6.89 -2.91 -0.02 3.17 16 10 C 0.02 0.96 5.46 84.66 0.46 1.43 16 11 N -0.92 -51.47 13.29 21.45 0.28 -51.18 16 12 Si 0.95 42.85 29.54 68.60 2.03 44.87 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 14 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 15 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 16 S 2.71 103.88 5.75 -56.49 -0.32 103.56 16 17 O -0.95 -42.03 16.80 -128.00 -2.15 -44.18 16 18 O -0.96 -38.32 16.99 -127.90 -2.17 -40.50 16 19 C -0.55 -17.86 7.35 67.11 0.49 -17.37 16 20 C -0.10 -2.89 10.58 22.06 0.23 -2.65 16 21 C -0.11 -2.73 10.62 22.40 0.24 -2.49 16 22 C -0.04 -1.04 7.18 24.04 0.17 -0.87 16 23 C 0.58 12.56 8.30 69.97 0.58 13.14 16 24 O -0.50 -11.92 17.65 19.41 0.34 -11.58 16 25 O -0.49 -7.70 13.44 -56.70 -0.76 -8.46 16 26 O -0.11 -3.25 10.67 -4.76 -0.05 -3.30 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.16 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.33 6.56 -2.39 -0.02 1.31 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 2.49 6.59 -2.39 -0.02 2.47 16 36 H 0.09 2.73 6.43 -2.39 -0.02 2.72 16 37 H 0.09 2.47 7.61 -2.38 -0.02 2.46 16 38 H 0.03 1.31 7.61 -2.39 -0.02 1.30 16 39 H 0.04 1.66 8.00 -2.39 -0.02 1.64 16 40 H 0.27 14.02 8.31 -92.70 -0.77 13.25 16 41 H 0.19 4.90 8.06 -2.91 -0.02 4.88 16 42 H 0.21 3.51 8.06 -2.91 -0.02 3.48 16 43 H 0.45 1.62 9.11 -74.06 -0.67 0.95 16 Total: -1.00 -69.58 382.29 0.80 -68.77 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.37 Total: 12.68 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 4.69 Total: -31.42 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -1.17 Total: -90.44 kcal Atomic # 8 Polarization: -103.22 SS G_CDS: -4.79 Total: -108.02 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: 103.88 SS G_CDS: -0.32 Total: 103.56 kcal Total: -69.58 0.80 -68.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736427841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.577 kcal (2) G-P(sol) polarization free energy of solvation -69.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds