Wall clock time and date at job start Wed Apr 1 2020 03:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47080 * 2 1 4 4 C 1.50695 * 109.47204 * 240.00145 * 2 1 3 5 5 O 1.20822 * 119.99953 * 239.99686 * 4 2 1 6 6 O 1.34231 * 120.00196 * 60.00164 * 4 2 1 7 7 C 1.45196 * 117.00194 * 179.97438 * 6 4 2 8 8 C 1.50700 * 109.47104 * 179.97438 * 7 6 4 9 9 O 1.21284 * 120.00378 * 0.02562 * 8 7 6 10 10 N 1.34784 * 120.00122 * 180.02562 * 8 7 6 11 11 C 1.37136 * 119.99614 * 354.95700 * 10 8 7 12 12 H 1.08001 * 120.00124 * 344.73942 * 11 10 8 13 13 C 1.38892 * 119.99721 * 164.74054 * 11 10 8 14 14 N 1.31416 * 120.00039 * 343.62442 * 13 11 10 15 15 Si 1.86800 * 120.00006 * 163.62040 * 13 11 10 16 16 H 1.48500 * 109.47030 * 89.99727 * 15 13 11 17 17 H 1.48493 * 109.47392 * 209.99939 * 15 13 11 18 18 H 1.48500 * 109.47279 * 330.00447 * 15 13 11 19 19 C 1.39784 * 120.00065 * 174.95713 * 10 8 7 20 20 C 1.38963 * 120.07733 * 101.20835 * 19 10 8 21 21 C 1.38081 * 119.92027 * 179.79138 * 20 19 10 22 22 C 1.38312 * 120.08052 * 0.46277 * 21 20 19 23 23 C 1.38308 * 120.15173 * 359.78930 * 22 21 20 24 24 C 1.38085 * 120.07961 * 359.97438 * 23 22 21 25 25 C 1.52996 * 109.46999 * 119.99842 * 2 1 3 26 26 F 1.39904 * 109.46978 * 180.02562 * 25 2 1 27 27 F 1.39901 * 109.47424 * 300.00316 * 25 2 1 28 28 F 1.39901 * 109.46774 * 60.00434 * 25 2 1 29 29 H 1.08994 * 109.46904 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47351 * 300.00155 * 1 2 3 31 31 H 1.09008 * 109.46872 * 59.99823 * 1 2 3 32 32 H 1.08995 * 109.47450 * 300.00091 * 7 6 4 33 33 H 1.09004 * 109.46780 * 60.00544 * 7 6 4 34 34 H 0.97000 * 119.99874 * 185.01724 * 14 13 11 35 35 H 1.08000 * 120.04169 * 359.97438 * 20 19 10 36 36 H 1.08000 * 119.96350 * 180.25370 * 21 20 19 37 37 H 1.07994 * 119.92249 * 179.76767 * 22 21 20 38 38 H 1.08001 * 119.96243 * 180.02562 * 23 22 21 39 39 H 1.08004 * 120.03718 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 2.7270 -1.6927 -1.1196 6 8 1.7081 -0.2517 -2.4496 7 6 2.2278 -0.9856 -3.5896 8 6 1.7628 -0.3291 -4.8639 9 8 1.0627 0.6602 -4.8161 10 7 2.1248 -0.8413 -6.0569 11 6 2.9992 -1.8962 -6.1132 12 1 3.5849 -2.1591 -5.2448 13 6 3.1316 -2.6265 -7.2872 14 7 2.2174 -2.5318 -8.2266 15 14 4.6090 -3.7433 -7.5309 16 1 4.2945 -5.0999 -7.0152 17 1 4.9333 -3.8266 -8.9776 18 1 5.7738 -3.1913 -6.7935 19 6 1.6090 -0.2972 -7.2367 20 6 2.3804 0.5725 -7.9981 21 6 1.8693 1.1047 -9.1652 22 6 0.5876 0.7807 -9.5717 23 6 -0.1849 -0.0804 -8.8137 24 6 0.3216 -0.6202 -7.6480 25 6 2.0400 -0.7212 1.2492 26 9 3.4390 -0.7207 1.2495 27 9 1.5736 -0.0618 2.3915 28 9 1.5737 -2.0402 1.2491 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.3172 -0.9845 -3.5565 33 1 1.8642 -2.0127 -3.5569 34 1 2.2712 -3.0954 -9.0142 35 1 3.3797 0.8295 -7.6789 36 1 2.4697 1.7774 -9.7596 37 1 0.1890 1.2013 -10.4830 38 1 -1.1852 -0.3316 -9.1342 39 1 -0.2824 -1.2922 -7.0563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745620774.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:48 Heat of formation + Delta-G solvation = -230.130553 kcal Electronic energy + Delta-G solvation = -30438.967209 eV Core-core repulsion = 25511.637017 eV Total energy + Delta-G solvation = -4927.330192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.28171 -47.79880 -47.68055 -40.58747 -39.40780 -37.45445 -36.27541 -34.84912 -34.44105 -31.83767 -29.96135 -29.74519 -27.64180 -26.69996 -25.10533 -24.12074 -21.85162 -21.59779 -20.81498 -19.49086 -19.00510 -18.62575 -18.14710 -17.64186 -17.30410 -16.58795 -16.16267 -15.68444 -15.54019 -14.95191 -14.71226 -14.64609 -14.51806 -14.34539 -14.13493 -13.91765 -13.83907 -13.81942 -13.64316 -13.34632 -13.07314 -12.81114 -12.53733 -12.44087 -12.19940 -12.10251 -11.70896 -11.65986 -11.57160 -11.23053 -11.05177 -10.61622 -10.58540 -10.52550 -10.43043 -10.33144 -9.54778 -8.78974 -8.28607 -7.94344 -7.67239 -6.39210 -4.19133 2.02452 2.06640 2.37902 2.43690 2.65482 2.99926 3.12801 3.14947 3.42496 3.50167 3.77688 3.82143 3.99893 4.31046 4.53027 4.64553 4.75412 4.82519 4.93736 5.26434 5.34615 5.51880 5.65875 5.73657 5.77576 5.79654 5.84269 5.95110 6.33570 6.43679 6.49028 6.70979 6.96659 7.15692 7.25264 7.38251 7.48100 7.59846 7.65821 7.86643 8.26503 8.82053 9.13558 9.56006 10.45081 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.014860 B = 0.003036 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.830350 B = 9219.520899 C =10530.104520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.133 4.133 3 H 0.152 0.848 4 C 0.467 3.533 5 O -0.491 6.491 6 O -0.322 6.322 7 C 0.072 3.928 8 C 0.462 3.538 9 O -0.577 6.577 10 N -0.403 5.403 11 C -0.366 4.366 12 H 0.104 0.896 13 C 0.050 3.950 14 N -0.841 5.841 15 Si 0.921 3.079 16 H -0.275 1.275 17 H -0.280 1.280 18 H -0.267 1.267 19 C 0.237 3.763 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.143 4.143 23 C -0.121 4.121 24 C -0.066 4.066 25 C 0.472 3.528 26 F -0.172 7.172 27 F -0.177 7.177 28 F -0.170 7.170 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.275 0.725 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.277 3.915 10.184 11.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 H 0.169 0.831 4 C 0.307 3.693 5 O -0.378 6.378 6 O -0.236 6.236 7 C -0.004 4.004 8 C 0.251 3.749 9 O -0.461 6.461 10 N -0.121 5.121 11 C -0.491 4.491 12 H 0.122 0.878 13 C -0.159 4.159 14 N -0.475 5.475 15 Si 0.747 3.253 16 H -0.200 1.200 17 H -0.205 1.205 18 H -0.191 1.191 19 C 0.147 3.853 20 C -0.141 4.141 21 C -0.141 4.141 22 C -0.161 4.161 23 C -0.140 4.140 24 C -0.085 4.085 25 C 0.417 3.583 26 F -0.154 7.154 27 F -0.158 7.158 28 F -0.151 7.151 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.399 4.025 9.986 11.031 hybrid contribution 1.121 -1.153 -0.183 1.618 sum -1.278 2.873 9.803 10.294 Atomic orbital electron populations 1.21884 0.88187 1.05020 1.05840 1.22223 1.02211 1.02942 0.87964 0.83062 1.22564 0.78281 0.83042 0.85369 1.90779 1.34731 1.25000 1.87294 1.86446 1.68710 1.54807 1.13668 1.22757 0.99987 0.95741 0.81886 1.19420 0.84591 0.86927 0.83974 1.90622 1.41462 1.27243 1.86751 1.41172 1.39996 1.29206 1.01728 1.19626 1.19282 1.09457 1.00770 0.87836 1.25273 0.97738 0.97460 0.95402 1.69931 1.31227 1.36827 1.09511 0.86010 0.81356 0.79884 0.78083 1.20017 1.20472 1.19146 1.17035 0.91509 0.90685 0.86091 1.20981 0.99367 0.98078 0.95652 1.20671 0.95819 1.00991 0.96650 1.20764 0.94996 1.00662 0.99723 1.20692 0.99070 0.98737 0.95493 1.20800 0.94995 0.97005 0.95710 1.19758 0.76008 0.77915 0.84604 1.93235 1.29125 1.96336 1.96661 1.93193 1.88556 1.80823 1.53262 1.93223 1.88253 1.37012 1.96655 0.90549 0.89672 0.88185 0.88743 0.88230 0.91408 0.87391 0.87490 0.87657 0.87458 0.87625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.88 37.16 0.33 -1.03 16 2 C -0.13 -1.44 2.81 -91.77 -0.26 -1.70 16 3 H 0.15 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.47 7.11 7.02 36.00 0.25 7.36 16 5 O -0.49 -8.68 14.58 -18.75 -0.27 -8.95 16 6 O -0.32 -5.66 9.66 -45.91 -0.44 -6.11 16 7 C 0.07 1.40 4.49 36.01 0.16 1.57 16 8 C 0.46 10.72 7.66 -10.98 -0.08 10.63 16 9 O -0.58 -14.69 16.48 -14.11 -0.23 -14.92 16 10 N -0.40 -9.74 2.66 -58.98 -0.16 -9.90 16 11 C -0.37 -8.74 9.19 -14.94 -0.14 -8.87 16 12 H 0.10 2.31 6.46 -52.49 -0.34 1.97 16 13 C 0.05 1.20 5.24 -17.49 -0.09 1.11 16 14 N -0.84 -20.79 10.34 55.49 0.57 -20.22 16 15 Si 0.92 18.74 29.59 -169.99 -5.03 13.71 16 16 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 17 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 19 C 0.24 5.67 2.29 -83.70 -0.19 5.48 16 20 C -0.12 -2.71 9.95 -39.37 -0.39 -3.10 16 21 C -0.12 -2.39 10.04 -39.61 -0.40 -2.79 16 22 C -0.14 -2.67 10.04 -39.53 -0.40 -3.07 16 23 C -0.12 -2.40 10.04 -39.61 -0.40 -2.80 16 24 C -0.07 -1.50 8.66 -39.37 -0.34 -1.84 16 25 C 0.47 5.52 2.42 37.16 0.09 5.61 16 26 F -0.17 -2.30 16.40 2.25 0.04 -2.26 16 27 F -0.18 -1.81 16.80 2.25 0.04 -1.77 16 28 F -0.17 -2.26 15.88 2.25 0.04 -2.22 16 29 H 0.08 0.71 7.80 -51.93 -0.41 0.30 16 30 H 0.08 0.56 7.80 -51.93 -0.41 0.16 16 31 H 0.10 0.93 8.11 -51.92 -0.42 0.51 16 32 H 0.09 1.74 7.52 -51.93 -0.39 1.35 16 33 H 0.10 1.87 8.13 -51.93 -0.42 1.45 16 34 H 0.27 6.55 8.32 -40.82 -0.34 6.21 16 35 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 36 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 38 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.11 2.44 8.06 -52.48 -0.42 2.02 16 LS Contribution 355.02 15.07 5.35 5.35 Total: -1.00 -29.60 355.02 -6.01 -35.61 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -4.06 Total: 5.11 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -1.85 Total: 6.56 kcal Atomic # 7 Polarization: -30.54 SS G_CDS: 0.42 Total: -30.12 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.95 Total: -29.98 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.11 Total: -6.25 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.60 -6.01 -35.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745620774.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.520 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds