Wall clock time and date at job start Wed Apr 1 2020 03:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47080 * 2 1 4 4 C 1.50695 * 109.47204 * 240.00145 * 2 1 3 5 5 O 1.20822 * 119.99953 * 239.99686 * 4 2 1 6 6 O 1.34231 * 120.00196 * 60.00164 * 4 2 1 7 7 C 1.45196 * 117.00194 * 179.97438 * 6 4 2 8 8 C 1.50700 * 109.47104 * 179.97438 * 7 6 4 9 9 O 1.21284 * 120.00378 * 0.02562 * 8 7 6 10 10 N 1.34784 * 120.00122 * 180.02562 * 8 7 6 11 11 C 1.37136 * 119.99614 * 354.95700 * 10 8 7 12 12 H 1.08001 * 120.00124 * 344.73942 * 11 10 8 13 13 C 1.38892 * 119.99721 * 164.74054 * 11 10 8 14 14 N 1.31416 * 120.00039 * 343.62442 * 13 11 10 15 15 Si 1.86800 * 120.00006 * 163.62040 * 13 11 10 16 16 H 1.48500 * 109.47030 * 89.99727 * 15 13 11 17 17 H 1.48493 * 109.47392 * 209.99939 * 15 13 11 18 18 H 1.48500 * 109.47279 * 330.00447 * 15 13 11 19 19 C 1.39784 * 120.00065 * 174.95713 * 10 8 7 20 20 C 1.38963 * 120.07733 * 101.20835 * 19 10 8 21 21 C 1.38081 * 119.92027 * 179.79138 * 20 19 10 22 22 C 1.38312 * 120.08052 * 0.46277 * 21 20 19 23 23 C 1.38308 * 120.15173 * 359.78930 * 22 21 20 24 24 C 1.38085 * 120.07961 * 359.97438 * 23 22 21 25 25 C 1.52996 * 109.46999 * 119.99842 * 2 1 3 26 26 F 1.39904 * 109.46978 * 180.02562 * 25 2 1 27 27 F 1.39901 * 109.47424 * 300.00316 * 25 2 1 28 28 F 1.39901 * 109.46774 * 60.00434 * 25 2 1 29 29 H 1.08994 * 109.46904 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47351 * 300.00155 * 1 2 3 31 31 H 1.09008 * 109.46872 * 59.99823 * 1 2 3 32 32 H 1.08995 * 109.47450 * 300.00091 * 7 6 4 33 33 H 1.09004 * 109.46780 * 60.00544 * 7 6 4 34 34 H 0.97000 * 119.99874 * 185.01724 * 14 13 11 35 35 H 1.08000 * 120.04169 * 359.97438 * 20 19 10 36 36 H 1.08000 * 119.96350 * 180.25370 * 21 20 19 37 37 H 1.07994 * 119.92249 * 179.76767 * 22 21 20 38 38 H 1.08001 * 119.96243 * 180.02562 * 23 22 21 39 39 H 1.08004 * 120.03718 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 2.7270 -1.6927 -1.1196 6 8 1.7081 -0.2517 -2.4496 7 6 2.2278 -0.9856 -3.5896 8 6 1.7628 -0.3291 -4.8639 9 8 1.0627 0.6602 -4.8161 10 7 2.1248 -0.8413 -6.0569 11 6 2.9992 -1.8962 -6.1132 12 1 3.5849 -2.1591 -5.2448 13 6 3.1316 -2.6265 -7.2872 14 7 2.2174 -2.5318 -8.2266 15 14 4.6090 -3.7433 -7.5309 16 1 4.2945 -5.0999 -7.0152 17 1 4.9333 -3.8266 -8.9776 18 1 5.7738 -3.1913 -6.7935 19 6 1.6090 -0.2972 -7.2367 20 6 2.3804 0.5725 -7.9981 21 6 1.8693 1.1047 -9.1652 22 6 0.5876 0.7807 -9.5717 23 6 -0.1849 -0.0804 -8.8137 24 6 0.3216 -0.6202 -7.6480 25 6 2.0400 -0.7212 1.2492 26 9 3.4390 -0.7207 1.2495 27 9 1.5736 -0.0618 2.3915 28 9 1.5737 -2.0402 1.2491 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.3172 -0.9845 -3.5565 33 1 1.8642 -2.0127 -3.5569 34 1 2.2712 -3.0954 -9.0142 35 1 3.3797 0.8295 -7.6789 36 1 2.4697 1.7774 -9.7596 37 1 0.1890 1.2013 -10.4830 38 1 -1.1852 -0.3316 -9.1342 39 1 -0.2824 -1.2922 -7.0563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745620774.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:47 Heat of formation + Delta-G solvation = -243.976172 kcal Electronic energy + Delta-G solvation = -30439.567600 eV Core-core repulsion = 25511.637017 eV Total energy + Delta-G solvation = -4927.930583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -51.22878 -48.71106 -48.68096 -41.94766 -41.08844 -39.07281 -37.70193 -36.63464 -35.37902 -33.66676 -31.57046 -31.36028 -29.20998 -27.53436 -26.92095 -25.25848 -23.38958 -23.21084 -22.00572 -21.25783 -20.02909 -19.77743 -19.56396 -18.79073 -18.56585 -17.95540 -17.71903 -17.24988 -16.96626 -16.58188 -16.28282 -16.07900 -15.63739 -15.56618 -15.23710 -15.14920 -15.06855 -14.85219 -14.79166 -14.59387 -14.39277 -14.10655 -14.02629 -13.87674 -13.47067 -13.37001 -13.24097 -13.09281 -12.87946 -12.74082 -12.51165 -12.25268 -12.09818 -12.02177 -11.91806 -11.79664 -11.29467 -10.61090 -10.07385 -9.57408 -9.35435 -8.17349 -6.05120 0.72886 0.80203 0.81990 0.94241 1.34592 1.45697 1.54964 1.62988 1.75106 2.21755 2.48555 2.63599 2.87406 3.02423 3.10796 3.22378 3.48294 3.67726 3.85960 3.91982 4.09455 4.17804 4.24935 4.29493 4.40280 4.60862 4.62313 4.75132 4.90467 5.05839 5.08112 5.14064 5.33208 5.35881 5.62083 5.76919 5.80208 5.98763 6.19837 6.31631 6.52617 6.98688 7.34195 7.76124 8.64127 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.014860 B = 0.003036 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.830350 B = 9219.520899 C =10530.104520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 H 0.185 0.815 4 C 0.466 3.534 5 O -0.518 6.518 6 O -0.330 6.330 7 C 0.083 3.917 8 C 0.451 3.549 9 O -0.608 6.608 10 N -0.411 5.411 11 C -0.383 4.383 12 H 0.113 0.887 13 C 0.014 3.986 14 N -0.860 5.860 15 Si 0.983 3.017 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.263 1.263 19 C 0.208 3.792 20 C -0.148 4.148 21 C -0.120 4.120 22 C -0.138 4.138 23 C -0.120 4.120 24 C -0.093 4.093 25 C 0.473 3.527 26 F -0.183 7.183 27 F -0.164 7.164 28 F -0.182 7.182 29 H 0.069 0.931 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.273 0.727 35 H 0.101 0.899 36 H 0.141 0.859 37 H 0.149 0.851 38 H 0.137 0.863 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.302 4.632 9.853 11.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.144 4.144 3 H 0.202 0.798 4 C 0.308 3.692 5 O -0.406 6.406 6 O -0.244 6.244 7 C 0.007 3.993 8 C 0.241 3.759 9 O -0.495 6.495 10 N -0.128 5.128 11 C -0.508 4.508 12 H 0.130 0.870 13 C -0.193 4.193 14 N -0.495 5.495 15 Si 0.806 3.194 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.187 1.187 19 C 0.118 3.882 20 C -0.167 4.167 21 C -0.138 4.138 22 C -0.156 4.156 23 C -0.139 4.139 24 C -0.113 4.113 25 C 0.418 3.582 26 F -0.165 7.165 27 F -0.145 7.145 28 F -0.163 7.163 29 H 0.089 0.911 30 H 0.133 0.867 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.119 0.881 36 H 0.159 0.841 37 H 0.166 0.834 38 H 0.155 0.845 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.427 4.742 9.668 11.038 hybrid contribution 1.073 -1.337 -0.087 1.716 sum -1.354 3.405 9.581 10.258 Atomic orbital electron populations 1.21951 0.86482 1.05100 1.07147 1.22393 1.03402 1.03675 0.84959 0.79784 1.23409 0.77448 0.82807 0.85497 1.90766 1.36040 1.26364 1.87468 1.86458 1.68984 1.54856 1.14144 1.22468 1.00223 0.95329 0.81289 1.19988 0.84257 0.86724 0.84920 1.90571 1.42921 1.28617 1.87351 1.41408 1.39823 1.29174 1.02361 1.19976 1.19587 1.09779 1.01460 0.86976 1.26019 0.99668 0.98613 0.95001 1.70078 1.32379 1.37330 1.09672 0.85075 0.78456 0.78181 0.77650 1.19676 1.20635 1.18684 1.17364 0.92344 0.91860 0.86600 1.21147 0.99349 0.99112 0.97136 1.21103 0.96614 1.00476 0.95605 1.21241 0.94302 0.99400 1.00609 1.21085 1.00507 0.98048 0.94243 1.20841 0.94941 0.98207 0.97265 1.19841 0.75487 0.77566 0.85277 1.93216 1.30143 1.96355 1.96759 1.93219 1.88311 1.80436 1.52573 1.93203 1.88318 1.38039 1.96754 0.91149 0.86653 0.88537 0.87983 0.88109 0.91634 0.88059 0.84098 0.83367 0.84543 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 8.88 71.98 0.64 -1.76 16 2 C -0.12 -2.49 2.81 -11.54 -0.03 -2.53 16 3 H 0.19 2.48 8.14 -2.38 -0.02 2.46 16 4 C 0.47 14.02 7.02 71.23 0.50 14.52 16 5 O -0.52 -18.35 14.58 21.98 0.32 -18.03 16 6 O -0.33 -11.69 9.66 -45.07 -0.44 -12.12 16 7 C 0.08 3.31 4.49 71.24 0.32 3.63 16 8 C 0.45 21.66 7.66 87.66 0.67 22.33 16 9 O -0.61 -32.03 16.48 15.76 0.26 -31.77 16 10 N -0.41 -20.48 2.66 -458.89 -1.22 -21.70 16 11 C -0.38 -18.64 9.19 84.02 0.77 -17.87 16 12 H 0.11 5.08 6.46 -2.91 -0.02 5.06 16 13 C 0.01 0.66 5.24 84.91 0.44 1.11 16 14 N -0.86 -42.99 10.34 21.65 0.22 -42.76 16 15 Si 0.98 38.39 29.59 68.60 2.03 40.42 16 16 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 17 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 18 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 19 C 0.21 10.20 2.29 38.22 0.09 10.29 16 20 C -0.15 -6.66 9.95 22.41 0.22 -6.44 16 21 C -0.12 -4.45 10.04 22.25 0.22 -4.22 16 22 C -0.14 -4.75 10.04 22.30 0.22 -4.53 16 23 C -0.12 -4.61 10.04 22.25 0.22 -4.39 16 24 C -0.09 -4.33 8.66 22.41 0.19 -4.14 16 25 C 0.47 10.39 2.42 71.98 0.17 10.56 16 26 F -0.18 -4.72 16.40 44.97 0.74 -3.98 16 27 F -0.16 -2.99 16.80 44.97 0.76 -2.23 16 28 F -0.18 -4.70 15.88 44.97 0.71 -3.99 16 29 H 0.07 1.22 7.80 -2.39 -0.02 1.20 16 30 H 0.11 1.17 7.80 -2.39 -0.02 1.15 16 31 H 0.10 1.67 8.11 -2.38 -0.02 1.65 16 32 H 0.10 3.84 7.52 -2.39 -0.02 3.82 16 33 H 0.10 3.93 8.13 -2.38 -0.02 3.91 16 34 H 0.27 13.08 8.32 -92.71 -0.77 12.31 16 35 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 36 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 37 H 0.15 3.84 8.06 -2.91 -0.02 3.81 16 38 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 39 H 0.09 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -65.47 355.02 9.15 -56.32 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 1.10 Total: 23.28 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: 4.67 Total: 16.57 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: -1.00 Total: -64.46 kcal Atomic # 8 Polarization: -62.07 SS G_CDS: 0.14 Total: -61.93 kcal Atomic # 9 Polarization: -12.41 SS G_CDS: 2.21 Total: -10.20 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -65.47 9.15 -56.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745620774.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.658 kcal (2) G-P(sol) polarization free energy of solvation -65.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -253.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds