Wall clock time and date at job start Wed Apr 1 2020 04:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 119.99773 * 2 1 4 4 C 1.53007 * 109.46934 * 269.99293 * 3 2 1 5 5 F 1.39904 * 109.46585 * 60.00417 * 4 3 2 6 6 F 1.39902 * 109.47081 * 180.02562 * 4 3 2 7 7 F 1.39898 * 109.47003 * 300.00796 * 4 3 2 8 8 C 1.34770 * 120.00110 * 179.97438 * 2 1 3 9 9 O 1.21283 * 120.00416 * 180.02562 * 8 2 1 10 10 C 1.50705 * 120.00065 * 0.02562 * 8 2 1 11 11 O 1.45197 * 109.47407 * 179.97438 * 10 8 2 12 12 C 1.34777 * 117.00031 * 179.97438 * 11 10 8 13 13 O 1.21504 * 119.99877 * 0.02562 * 12 11 10 14 14 C 1.47511 * 120.00005 * 179.97438 * 12 11 10 15 15 C 1.40062 * 119.90007 * 179.97438 * 14 12 11 16 16 C 1.36301 * 120.09854 * 180.25545 * 15 14 12 17 17 C 1.40898 * 119.89747 * 359.51805 * 16 15 14 18 18 C 1.41088 * 120.09801 * 180.23021 * 17 16 15 19 19 H 1.08004 * 120.00254 * 205.25010 * 18 17 16 20 20 C 1.40247 * 120.00057 * 25.25428 * 18 17 16 21 21 N 1.30633 * 119.99971 * 17.90299 * 20 18 17 22 22 Si 1.86808 * 119.99982 * 197.90967 * 20 18 17 23 23 H 1.48494 * 109.47142 * 94.52344 * 22 20 18 24 24 H 1.48508 * 109.46771 * 214.52492 * 22 20 18 25 25 H 1.48496 * 109.47083 * 334.52055 * 22 20 18 26 26 C 1.40895 * 119.80478 * 0.50708 * 17 16 15 27 27 C 1.36298 * 119.89575 * 359.72208 * 26 17 16 28 28 H 1.09003 * 109.46871 * 270.00615 * 1 2 3 29 29 H 1.09004 * 109.46636 * 30.00297 * 1 2 3 30 30 H 1.09001 * 109.47077 * 150.00366 * 1 2 3 31 31 H 1.08998 * 109.47585 * 29.99614 * 3 2 1 32 32 H 1.09000 * 109.47056 * 149.99972 * 3 2 1 33 33 H 1.08994 * 109.47115 * 59.99551 * 10 8 2 34 34 H 1.09005 * 109.47040 * 299.99992 * 10 8 2 35 35 H 1.07996 * 119.95285 * 359.97438 * 15 14 12 36 36 H 1.08003 * 120.04948 * 179.75205 * 16 15 14 37 37 H 0.97002 * 119.99961 * 180.02562 * 21 20 18 38 38 H 1.08003 * 120.05517 * 179.70820 * 26 17 16 39 39 H 1.08001 * 119.94895 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4426 5 9 1.2302 1.8776 -2.1021 6 9 3.1526 2.9216 -1.4426 7 9 3.2086 0.7352 -2.1019 8 6 2.1389 -1.1671 0.0005 9 8 3.3517 -1.1672 0.0010 10 6 1.3854 -2.4723 0.0005 11 8 2.3289 -3.5759 0.0005 12 6 1.8138 -4.8213 0.0011 13 8 0.6092 -4.9805 0.0010 14 6 2.7123 -5.9912 0.0005 15 6 2.1747 -7.2845 0.0016 16 6 3.0012 -8.3683 0.0064 17 6 4.3984 -8.1861 -0.0001 18 6 5.2578 -9.3050 -0.0001 19 1 6.2594 -9.2167 0.3944 20 6 4.8117 -10.5319 -0.5124 21 7 3.7653 -10.5719 -1.2934 22 14 5.7137 -12.1091 -0.0779 23 1 5.0564 -12.7497 1.0894 24 1 5.6764 -13.0361 -1.2375 25 1 7.1253 -11.7950 0.2596 26 6 4.9347 -6.8832 -0.0006 27 6 4.1006 -5.8052 -0.0006 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5137 32 1 3.1499 1.1384 0.5138 33 1 0.7591 -2.5302 -0.8896 34 1 0.7584 -2.5298 0.8903 35 1 1.1037 -7.4233 0.0033 36 1 2.5858 -9.3653 0.0113 37 1 3.4565 -11.4206 -1.6475 38 1 6.0051 -6.7389 -0.0008 39 1 4.5108 -4.8062 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758690209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:58 Heat of formation + Delta-G solvation = -269.120754 kcal Electronic energy + Delta-G solvation = -29275.423725 eV Core-core repulsion = 24346.402792 eV Total energy + Delta-G solvation = -4929.020934 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -51.12424 -48.65152 -48.62957 -41.65406 -40.77250 -39.24786 -37.35240 -36.90485 -35.77349 -32.36454 -31.90083 -31.43715 -29.42190 -27.89013 -27.38419 -24.70632 -23.95580 -22.93738 -21.67693 -20.99467 -19.63062 -19.55913 -19.42948 -19.02913 -18.62060 -18.09202 -17.71835 -17.61215 -17.11228 -16.78487 -16.07769 -15.77046 -15.55213 -15.52001 -15.24365 -15.06317 -15.03557 -14.80574 -14.77400 -14.57984 -14.39780 -14.05678 -13.99431 -13.91038 -13.64371 -13.56382 -13.29140 -13.22247 -13.00561 -12.86949 -12.66683 -12.41101 -11.83281 -11.82365 -11.45454 -11.34594 -11.18294 -11.12239 -10.15634 -9.64818 -9.54060 -8.86203 -6.56391 0.21185 1.03165 1.12989 1.16747 1.35838 1.41073 1.55037 1.81064 1.86065 2.08505 2.14769 2.66488 2.78619 2.96905 3.15059 3.28891 3.61162 3.91192 3.98736 4.01665 4.14623 4.19168 4.27032 4.35501 4.43178 4.63904 4.89670 4.92037 4.96907 5.05177 5.13526 5.19248 5.28819 5.54409 5.75552 5.85021 5.90868 5.96531 6.14430 6.47980 6.69111 6.75018 6.80553 6.95589 8.09042 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.026080 B = 0.001984 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.347119 B =14108.872944 C =14713.401756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.609 5.609 3 C 0.080 3.920 4 C 0.429 3.571 5 F -0.183 7.183 6 F -0.182 7.182 7 F -0.198 7.198 8 C 0.520 3.480 9 O -0.541 6.541 10 C 0.046 3.954 11 O -0.350 6.350 12 C 0.524 3.476 13 O -0.560 6.560 14 C -0.291 4.291 15 C -0.036 4.036 16 C -0.202 4.202 17 C 0.106 3.894 18 C -0.457 4.457 19 H 0.095 0.905 20 C 0.034 3.966 21 N -0.792 5.792 22 Si 0.993 3.007 23 H -0.259 1.259 24 H -0.265 1.265 25 H -0.253 1.253 26 C -0.251 4.251 27 C -0.023 4.023 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.175 0.825 32 H 0.125 0.875 33 H 0.114 0.886 34 H 0.123 0.877 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.300 0.700 38 H 0.113 0.887 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.086 20.016 3.002 21.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.343 5.343 3 C -0.045 4.045 4 C 0.373 3.627 5 F -0.164 7.164 6 F -0.163 7.163 7 F -0.180 7.180 8 C 0.307 3.693 9 O -0.417 6.417 10 C -0.031 4.031 11 O -0.267 6.267 12 C 0.377 3.623 13 O -0.455 6.455 14 C -0.294 4.294 15 C -0.055 4.055 16 C -0.221 4.221 17 C 0.103 3.897 18 C -0.484 4.484 19 H 0.113 0.887 20 C -0.186 4.186 21 N -0.415 5.415 22 Si 0.812 3.188 23 H -0.183 1.183 24 H -0.189 1.189 25 H -0.176 1.176 26 C -0.271 4.271 27 C -0.041 4.041 28 H 0.113 0.887 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.193 0.807 32 H 0.143 0.857 33 H 0.132 0.868 34 H 0.141 0.859 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.111 0.889 38 H 0.131 0.869 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.945 19.854 2.810 21.220 hybrid contribution 0.145 -0.516 -0.550 0.768 sum -6.800 19.337 2.260 20.622 Atomic orbital electron populations 1.22430 0.75036 1.05682 1.05048 1.47632 1.09327 1.03404 1.73967 1.22849 1.03842 0.88428 0.89342 1.21679 0.73943 0.74764 0.92306 1.93172 1.43982 1.95348 1.83934 1.93192 1.79725 1.46385 1.97028 1.93225 1.77192 1.63545 1.84009 1.20391 0.87591 0.85629 0.75657 1.90775 1.15236 1.87341 1.48349 1.22842 0.91098 0.82548 1.06601 1.86618 1.40098 1.14794 1.85144 1.21273 0.87023 0.82348 0.71679 1.90679 1.16830 1.86730 1.51248 1.18393 0.92611 0.89762 1.28611 1.20528 0.98557 0.91227 0.95151 1.20941 0.93609 0.97512 1.10011 1.18197 0.92953 0.93093 0.85506 1.20274 1.00887 0.94171 1.33024 0.88722 1.27085 0.95378 1.04567 0.91601 1.69773 1.21291 1.30792 1.19634 0.85016 0.79520 0.75102 0.79166 1.18347 1.18931 1.17585 1.20933 0.98829 0.92311 1.14982 1.20747 0.92044 0.98303 0.93017 0.88746 0.87973 0.89994 0.80739 0.85735 0.86837 0.85902 0.87487 0.86886 0.88892 0.86861 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 10.04 127.77 1.28 1.70 16 2 N -0.61 -9.30 2.79 -846.73 -2.36 -11.66 16 3 C 0.08 0.96 5.44 86.38 0.47 1.43 16 4 C 0.43 7.42 3.29 71.98 0.24 7.65 16 5 F -0.18 -2.97 16.23 44.97 0.73 -2.24 16 6 F -0.18 -3.11 17.32 44.97 0.78 -2.34 16 7 F -0.20 -5.19 16.24 44.97 0.73 -4.46 16 8 C 0.52 13.17 7.35 87.66 0.64 13.82 16 9 O -0.54 -18.66 15.48 15.76 0.24 -18.41 16 10 C 0.05 1.22 4.51 71.24 0.32 1.54 16 11 O -0.35 -13.40 8.98 -50.49 -0.45 -13.85 16 12 C 0.52 22.66 7.89 70.27 0.55 23.22 16 13 O -0.56 -24.64 16.11 19.82 0.32 -24.32 16 14 C -0.29 -13.89 5.89 -19.95 -0.12 -14.01 16 15 C -0.04 -1.77 9.52 22.26 0.21 -1.56 16 16 C -0.20 -10.45 8.63 22.47 0.19 -10.25 16 17 C 0.11 5.50 5.57 -21.28 -0.12 5.38 16 18 C -0.46 -22.67 9.04 23.46 0.21 -22.46 16 19 H 0.09 4.41 7.91 -2.91 -0.02 4.39 16 20 C 0.03 1.56 5.13 85.36 0.44 1.99 16 21 N -0.79 -38.17 11.00 21.88 0.24 -37.93 16 22 Si 0.99 34.19 29.60 68.60 2.03 36.22 16 23 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 24 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 25 H -0.25 -8.43 7.11 99.48 0.71 -7.72 16 26 C -0.25 -12.19 9.73 22.47 0.22 -11.97 16 27 C -0.02 -1.05 9.55 22.26 0.21 -0.84 16 28 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.10 0.38 7.25 -2.38 -0.02 0.36 16 30 H 0.08 0.64 6.44 -2.39 -0.02 0.63 16 31 H 0.18 0.37 8.07 -2.39 -0.02 0.35 16 32 H 0.12 1.75 7.42 -2.39 -0.02 1.73 16 33 H 0.11 2.65 7.40 -2.39 -0.02 2.63 16 34 H 0.12 2.64 8.10 -2.38 -0.02 2.62 16 35 H 0.11 5.04 7.63 -2.91 -0.02 5.02 16 36 H 0.11 5.94 6.20 -2.91 -0.02 5.92 16 37 H 0.30 12.79 8.29 -92.71 -0.77 12.02 16 38 H 0.11 5.05 8.06 -2.91 -0.02 5.02 16 39 H 0.12 5.13 7.59 -2.91 -0.02 5.11 16 Total: -1.00 -69.08 355.14 8.13 -60.95 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 1.12 Total: 22.40 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 4.76 Total: -4.35 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: -2.12 Total: -49.59 kcal Atomic # 8 Polarization: -56.69 SS G_CDS: 0.11 Total: -56.58 kcal Atomic # 9 Polarization: -11.27 SS G_CDS: 2.24 Total: -9.04 kcal Atomic # 14 Polarization: 34.19 SS G_CDS: 2.03 Total: 36.22 kcal Total: -69.08 8.13 -60.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758690209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.175 kcal (2) G-P(sol) polarization free energy of solvation -69.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -269.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds