Wall clock time and date at job start Wed Apr 1 2020 03:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 O 1.45194 * 109.47067 * 120.00112 * 2 1 3 5 5 C 1.34776 * 117.00051 * 269.99810 * 4 2 1 6 6 O 1.21509 * 120.00089 * 0.02562 * 5 4 2 7 7 C 1.47508 * 119.99817 * 180.02562 * 5 4 2 8 8 C 1.40064 * 119.90259 * 359.72799 * 7 5 4 9 9 C 1.36302 * 120.10243 * 179.76319 * 8 7 5 10 10 C 1.40902 * 119.89635 * 0.50927 * 9 8 7 11 11 C 1.41088 * 120.09993 * 179.72413 * 10 9 8 12 12 H 1.08004 * 119.99890 * 205.09519 * 11 10 9 13 13 C 1.40247 * 120.00148 * 25.08439 * 11 10 9 14 14 N 1.30631 * 119.99921 * 18.01843 * 13 11 10 15 15 Si 1.86799 * 120.00025 * 198.02211 * 13 11 10 16 16 H 1.48497 * 109.47296 * 94.52616 * 15 13 11 17 17 H 1.48507 * 109.46819 * 214.52854 * 15 13 11 18 18 H 1.48499 * 109.46936 * 334.52417 * 15 13 11 19 19 C 1.40901 * 119.80181 * 359.73974 * 10 9 8 20 20 C 1.36297 * 119.89880 * 0.02562 * 19 10 9 21 21 C 1.50698 * 109.47207 * 240.00261 * 2 1 3 22 22 O 1.21281 * 120.00235 * 244.99871 * 21 2 1 23 23 N 1.34786 * 119.99849 * 64.72304 * 21 2 1 24 24 C 1.46502 * 119.99780 * 179.97438 * 23 21 2 25 25 C 1.52999 * 109.46962 * 180.02562 * 24 23 21 26 26 F 1.39894 * 109.47243 * 60.00085 * 25 24 23 27 27 F 1.39898 * 109.47080 * 180.02562 * 25 24 23 28 28 F 1.39899 * 109.46898 * 299.99755 * 25 24 23 29 29 H 1.08997 * 109.47252 * 300.00041 * 1 2 3 30 30 H 1.09006 * 109.47148 * 60.00074 * 1 2 3 31 31 H 1.08992 * 109.47237 * 179.97438 * 1 2 3 32 32 H 1.07994 * 119.94751 * 0.02562 * 8 7 5 33 33 H 1.07996 * 120.05171 * 180.23311 * 9 8 7 34 34 H 0.96995 * 120.00061 * 180.02562 * 14 13 11 35 35 H 1.08003 * 120.04896 * 179.97438 * 19 10 9 36 36 H 1.08003 * 119.95333 * 179.97438 * 20 19 10 37 37 H 0.96998 * 119.99975 * 0.02562 * 23 21 2 38 38 H 1.09001 * 109.47062 * 300.00015 * 24 23 21 39 39 H 1.08998 * 109.47087 * 60.00303 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2179 0.0670 2.2855 6 8 1.9970 1.2615 2.2549 7 6 2.7095 -0.5605 3.5267 8 6 2.9581 -1.9385 3.5614 9 6 3.4170 -2.5218 4.7046 10 6 3.6309 -1.7381 5.8559 11 6 4.1003 -2.3384 7.0433 12 1 3.8912 -1.8807 7.9989 13 6 4.8381 -3.5295 6.9827 14 7 5.3915 -3.8986 5.8584 15 14 5.0294 -4.5884 8.5096 16 1 3.9823 -5.6414 8.5161 17 1 6.3713 -5.2246 8.5058 18 1 4.8868 -3.7410 9.7207 19 6 3.3745 -0.3531 5.8179 20 6 2.9204 0.2224 4.6689 21 6 2.0323 -0.7103 -1.2305 22 8 2.6530 -1.7466 -1.1216 23 7 1.7871 -0.1969 -2.4523 24 6 2.2759 -0.8872 -3.6485 25 6 1.8656 -0.1003 -4.8948 26 9 2.4184 1.1836 -4.8387 27 9 2.3319 -0.7597 -6.0371 28 9 0.4709 -0.0056 -4.9483 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 2.7900 -2.5390 2.6797 33 1 3.6120 -3.5837 4.7293 34 1 5.9015 -4.7225 5.8164 35 1 3.5367 0.2513 6.6981 36 1 2.7231 1.2839 4.6389 37 1 1.2875 0.6300 -2.5396 38 1 3.3627 -0.9606 -3.6070 39 1 1.8455 -1.8877 -3.6920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758696469.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:07 Heat of formation + Delta-G solvation = -265.092400 kcal Electronic energy + Delta-G solvation = -29010.470805 eV Core-core repulsion = 24081.624554 eV Total energy + Delta-G solvation = -4928.846251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.65363 -48.16216 -48.12993 -40.46992 -39.31196 -37.48546 -35.84702 -35.37305 -33.97712 -32.30030 -30.30442 -29.53026 -29.42774 -26.30163 -24.99687 -23.64888 -22.38725 -21.06703 -20.86862 -19.96719 -19.12320 -18.91085 -18.69610 -17.58075 -17.39071 -16.79375 -16.29447 -15.88312 -15.69243 -15.31800 -15.25870 -14.94119 -14.84595 -14.55160 -14.30987 -14.26819 -14.19935 -14.00457 -13.66708 -13.50617 -13.13282 -12.93618 -12.68259 -12.48753 -12.42516 -12.15528 -11.97485 -11.64782 -11.40013 -11.33959 -11.00854 -10.74080 -10.53414 -10.16566 -9.97007 -9.77914 -9.64474 -9.50955 -9.40226 -7.77378 -7.66755 -7.11663 -4.70047 1.90165 2.00564 2.26631 2.31508 2.84964 2.92056 2.95482 3.01963 3.15671 3.32415 3.48088 3.56833 3.69131 3.74024 4.29832 4.43422 4.63306 4.79328 4.81973 4.94042 5.24856 5.49329 5.56940 5.62821 5.84679 5.98577 6.19744 6.24464 6.71904 6.78615 6.79325 6.93661 6.97093 7.06184 7.39893 7.63577 7.74402 7.77977 7.82083 7.98327 8.33578 8.54099 8.62892 8.67390 9.79713 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.021768 B = 0.001989 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.997924 B =14071.645279 C =14898.248859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.073 3.927 3 H 0.110 0.890 4 O -0.330 6.330 5 C 0.515 3.485 6 O -0.552 6.552 7 C -0.275 4.275 8 C -0.040 4.040 9 C -0.185 4.185 10 C 0.132 3.868 11 C -0.433 4.433 12 H 0.088 0.912 13 C 0.072 3.928 14 N -0.761 5.761 15 Si 0.916 3.084 16 H -0.264 1.264 17 H -0.274 1.274 18 H -0.258 1.258 19 C -0.239 4.239 20 C -0.017 4.017 21 C 0.526 3.474 22 O -0.500 6.500 23 N -0.732 5.732 24 C 0.080 3.920 25 C 0.449 3.551 26 F -0.177 7.177 27 F -0.173 7.173 28 F -0.178 7.178 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.290 0.710 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.408 0.592 38 H 0.117 0.883 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.694 3.766 -16.788 18.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.013 3.987 3 H 0.128 0.872 4 O -0.247 6.247 5 C 0.369 3.631 6 O -0.446 6.446 7 C -0.278 4.278 8 C -0.059 4.059 9 C -0.204 4.204 10 C 0.128 3.872 11 C -0.460 4.460 12 H 0.106 0.894 13 C -0.151 4.151 14 N -0.383 5.383 15 Si 0.740 3.260 16 H -0.189 1.189 17 H -0.199 1.199 18 H -0.181 1.181 19 C -0.258 4.258 20 C -0.035 4.035 21 C 0.312 3.688 22 O -0.372 6.372 23 N -0.390 5.390 24 C -0.046 4.046 25 C 0.395 3.605 26 F -0.159 7.159 27 F -0.154 7.154 28 F -0.159 7.159 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.139 0.861 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.244 0.756 38 H 0.135 0.865 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.130 3.146 -16.856 18.210 hybrid contribution -0.097 0.169 0.087 0.213 sum -6.228 3.314 -16.769 18.192 Atomic orbital electron populations 1.22146 0.92047 1.03970 1.03902 1.22111 0.95758 0.97613 0.83189 0.87230 1.86775 1.78026 1.41016 1.18892 1.21715 0.73651 0.84741 0.83035 1.90685 1.52987 1.16481 1.84441 1.18143 1.23925 0.94787 0.90924 1.20688 0.94933 0.92880 0.97384 1.21003 1.05875 1.00153 0.93383 1.17866 0.85796 0.90708 0.92802 1.19955 1.26529 1.04747 0.94724 0.89391 1.26176 0.93306 0.97505 0.98100 1.69742 1.20252 1.20884 1.27415 0.86148 0.78674 0.79941 0.81277 1.18852 1.19862 1.18135 1.20680 1.12836 0.94830 0.97500 1.20339 0.93951 0.97627 0.91604 1.20408 0.79413 0.85423 0.83554 1.90793 1.37967 1.22403 1.85998 1.45563 1.59931 1.29012 1.04527 1.22451 1.04069 0.97120 0.80947 1.20532 0.75202 0.78701 0.86107 1.93240 1.85263 1.40847 1.96523 1.93234 1.88463 1.80633 1.53082 1.93233 1.29734 1.96221 1.96755 0.90135 0.90750 0.90849 0.87797 0.86093 0.89909 0.88013 0.87913 0.75564 0.86508 0.86482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.50 37.16 0.35 -1.44 16 2 C 0.07 1.03 2.98 -27.88 -0.08 0.95 16 3 H 0.11 1.49 7.16 -51.93 -0.37 1.11 16 4 O -0.33 -6.37 8.65 -47.37 -0.41 -6.78 16 5 C 0.52 11.09 7.86 34.51 0.27 11.36 16 6 O -0.55 -12.08 15.58 -19.27 -0.30 -12.38 16 7 C -0.28 -6.43 5.89 -104.75 -0.62 -7.05 16 8 C -0.04 -0.95 9.55 -39.59 -0.38 -1.32 16 9 C -0.19 -4.62 8.63 -39.27 -0.34 -4.96 16 10 C 0.13 3.32 5.57 -106.80 -0.59 2.72 16 11 C -0.43 -10.52 9.04 -37.75 -0.34 -10.86 16 12 H 0.09 2.02 7.91 -52.48 -0.42 1.61 16 13 C 0.07 1.65 5.13 -17.31 -0.09 1.56 16 14 N -0.76 -18.14 10.99 55.56 0.61 -17.53 16 15 Si 0.92 16.92 29.60 -169.99 -5.03 11.88 16 16 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 17 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 18 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 19 C -0.24 -5.65 9.73 -39.27 -0.38 -6.03 16 20 C -0.02 -0.38 9.52 -39.59 -0.38 -0.76 16 21 C 0.53 6.93 7.18 -10.98 -0.08 6.85 16 22 O -0.50 -8.65 16.51 -14.05 -0.23 -8.89 16 23 N -0.73 -6.34 5.37 -60.29 -0.32 -6.66 16 24 C 0.08 0.57 5.64 -4.04 -0.02 0.55 16 25 C 0.45 3.05 3.11 37.16 0.12 3.17 16 26 F -0.18 -1.36 17.18 2.25 0.04 -1.32 16 27 F -0.17 -1.28 17.32 2.25 0.04 -1.25 16 28 F -0.18 -1.30 17.18 2.25 0.04 -1.26 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.55 7.90 -51.93 -0.41 0.14 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.10 2.33 7.59 -52.49 -0.40 1.94 16 33 H 0.12 3.06 6.19 -52.49 -0.33 2.74 16 34 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 35 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 36 H 0.10 2.22 7.63 -52.48 -0.40 1.82 16 37 H 0.41 2.57 8.12 -40.82 -0.33 2.23 16 38 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 360.45 15.07 5.43 5.43 Total: -1.00 -29.78 360.45 -6.60 -36.39 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -3.90 Total: 7.62 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -2.56 Total: -5.26 kcal Atomic # 7 Polarization: -24.47 SS G_CDS: 0.29 Total: -24.18 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.94 Total: -28.05 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.12 Total: -3.82 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.88 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.78 -6.60 -36.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758696469.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -228.707 kcal (2) G-P(sol) polarization free energy of solvation -29.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -265.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds