Wall clock time and date at job start Wed Apr 1 2020 03:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 O 1.45194 * 109.47067 * 120.00112 * 2 1 3 5 5 C 1.34776 * 117.00051 * 269.99810 * 4 2 1 6 6 O 1.21509 * 120.00089 * 0.02562 * 5 4 2 7 7 C 1.47508 * 119.99817 * 180.02562 * 5 4 2 8 8 C 1.40064 * 119.90259 * 359.72799 * 7 5 4 9 9 C 1.36302 * 120.10243 * 179.76319 * 8 7 5 10 10 C 1.40902 * 119.89635 * 0.50927 * 9 8 7 11 11 C 1.41088 * 120.09993 * 179.72413 * 10 9 8 12 12 H 1.08004 * 119.99890 * 205.09519 * 11 10 9 13 13 C 1.40247 * 120.00148 * 25.08439 * 11 10 9 14 14 N 1.30631 * 119.99921 * 18.01843 * 13 11 10 15 15 Si 1.86799 * 120.00025 * 198.02211 * 13 11 10 16 16 H 1.48497 * 109.47296 * 94.52616 * 15 13 11 17 17 H 1.48507 * 109.46819 * 214.52854 * 15 13 11 18 18 H 1.48499 * 109.46936 * 334.52417 * 15 13 11 19 19 C 1.40901 * 119.80181 * 359.73974 * 10 9 8 20 20 C 1.36297 * 119.89880 * 0.02562 * 19 10 9 21 21 C 1.50698 * 109.47207 * 240.00261 * 2 1 3 22 22 O 1.21281 * 120.00235 * 244.99871 * 21 2 1 23 23 N 1.34786 * 119.99849 * 64.72304 * 21 2 1 24 24 C 1.46502 * 119.99780 * 179.97438 * 23 21 2 25 25 C 1.52999 * 109.46962 * 180.02562 * 24 23 21 26 26 F 1.39894 * 109.47243 * 60.00085 * 25 24 23 27 27 F 1.39898 * 109.47080 * 180.02562 * 25 24 23 28 28 F 1.39899 * 109.46898 * 299.99755 * 25 24 23 29 29 H 1.08997 * 109.47252 * 300.00041 * 1 2 3 30 30 H 1.09006 * 109.47148 * 60.00074 * 1 2 3 31 31 H 1.08992 * 109.47237 * 179.97438 * 1 2 3 32 32 H 1.07994 * 119.94751 * 0.02562 * 8 7 5 33 33 H 1.07996 * 120.05171 * 180.23311 * 9 8 7 34 34 H 0.96995 * 120.00061 * 180.02562 * 14 13 11 35 35 H 1.08003 * 120.04896 * 179.97438 * 19 10 9 36 36 H 1.08003 * 119.95333 * 179.97438 * 20 19 10 37 37 H 0.96998 * 119.99975 * 0.02562 * 23 21 2 38 38 H 1.09001 * 109.47062 * 300.00015 * 24 23 21 39 39 H 1.08998 * 109.47087 * 60.00303 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2179 0.0670 2.2855 6 8 1.9970 1.2615 2.2549 7 6 2.7095 -0.5605 3.5267 8 6 2.9581 -1.9385 3.5614 9 6 3.4170 -2.5218 4.7046 10 6 3.6309 -1.7381 5.8559 11 6 4.1003 -2.3384 7.0433 12 1 3.8912 -1.8807 7.9989 13 6 4.8381 -3.5295 6.9827 14 7 5.3915 -3.8986 5.8584 15 14 5.0294 -4.5884 8.5096 16 1 3.9823 -5.6414 8.5161 17 1 6.3713 -5.2246 8.5058 18 1 4.8868 -3.7410 9.7207 19 6 3.3745 -0.3531 5.8179 20 6 2.9204 0.2224 4.6689 21 6 2.0323 -0.7103 -1.2305 22 8 2.6530 -1.7466 -1.1216 23 7 1.7871 -0.1969 -2.4523 24 6 2.2759 -0.8872 -3.6485 25 6 1.8656 -0.1003 -4.8948 26 9 2.4184 1.1836 -4.8387 27 9 2.3319 -0.7597 -6.0371 28 9 0.4709 -0.0056 -4.9483 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 2.7900 -2.5390 2.6797 33 1 3.6120 -3.5837 4.7293 34 1 5.9015 -4.7225 5.8164 35 1 3.5367 0.2513 6.6981 36 1 2.7231 1.2839 4.6389 37 1 1.2875 0.6300 -2.5396 38 1 3.3627 -0.9606 -3.6070 39 1 1.8455 -1.8877 -3.6920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758696469.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:06 Heat of formation + Delta-G solvation = -281.029405 kcal Electronic energy + Delta-G solvation = -29011.161886 eV Core-core repulsion = 24081.624554 eV Total energy + Delta-G solvation = -4929.537331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -51.24098 -48.75210 -48.71618 -41.76781 -40.68086 -39.25091 -37.35777 -36.34065 -35.75482 -33.42963 -32.04837 -31.38322 -30.21365 -28.04164 -26.03654 -24.59864 -23.78886 -22.84320 -22.08690 -21.49051 -19.70797 -19.58850 -19.55475 -19.40196 -18.83935 -17.95089 -17.49503 -17.19831 -17.04733 -16.63163 -16.32683 -15.77879 -15.65681 -15.56787 -15.26336 -15.17822 -15.13841 -14.86169 -14.85693 -14.72452 -14.55898 -14.31462 -13.98784 -13.93358 -13.65690 -13.37987 -13.32287 -13.05419 -12.89674 -12.72361 -12.64799 -12.40338 -11.89842 -11.81275 -11.42777 -11.32887 -11.15195 -11.07009 -10.62474 -9.63788 -9.53823 -8.85404 -6.55675 0.21843 1.04337 1.13551 1.22279 1.36318 1.41431 1.55251 1.58208 1.86768 2.11115 2.14830 2.57766 2.67151 2.90958 3.07231 3.37089 3.61568 3.74663 3.85136 4.06805 4.09469 4.24450 4.35911 4.41871 4.61738 4.62784 4.80949 4.92727 4.98143 5.05142 5.11419 5.21066 5.32747 5.55723 5.80054 5.89417 5.96163 6.01965 6.14399 6.48984 6.69674 6.79526 6.81565 6.97153 8.09554 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.021768 B = 0.001989 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.997924 B =14071.645279 C =14898.248859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.061 3.939 3 H 0.118 0.882 4 O -0.345 6.345 5 C 0.523 3.477 6 O -0.558 6.558 7 C -0.291 4.291 8 C -0.040 4.040 9 C -0.204 4.204 10 C 0.105 3.895 11 C -0.457 4.457 12 H 0.095 0.905 13 C 0.034 3.966 14 N -0.792 5.792 15 Si 0.992 3.008 16 H -0.260 1.260 17 H -0.266 1.266 18 H -0.252 1.252 19 C -0.249 4.249 20 C -0.019 4.019 21 C 0.534 3.466 22 O -0.548 6.548 23 N -0.711 5.711 24 C 0.078 3.922 25 C 0.461 3.539 26 F -0.181 7.181 27 F -0.174 7.174 28 F -0.178 7.178 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.299 0.701 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.423 0.577 38 H 0.122 0.878 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.278 4.046 -17.359 19.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.002 3.998 3 H 0.136 0.864 4 O -0.261 6.261 5 C 0.376 3.624 6 O -0.453 6.453 7 C -0.294 4.294 8 C -0.059 4.059 9 C -0.223 4.223 10 C 0.102 3.898 11 C -0.483 4.483 12 H 0.113 0.887 13 C -0.187 4.187 14 N -0.415 5.415 15 Si 0.812 3.188 16 H -0.184 1.184 17 H -0.190 1.190 18 H -0.175 1.175 19 C -0.268 4.268 20 C -0.038 4.038 21 C 0.320 3.680 22 O -0.424 6.424 23 N -0.369 5.369 24 C -0.047 4.047 25 C 0.406 3.594 26 F -0.162 7.162 27 F -0.156 7.156 28 F -0.159 7.159 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.090 0.910 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.111 0.889 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.261 0.739 38 H 0.139 0.861 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.744 3.474 -17.487 19.062 hybrid contribution 0.054 0.146 0.084 0.177 sum -6.690 3.620 -17.403 18.993 Atomic orbital electron populations 1.22172 0.89453 1.04374 1.05468 1.22599 0.97864 0.97613 0.81675 0.86433 1.86707 1.77978 1.41607 1.19830 1.21302 0.73357 0.84484 0.83306 1.90664 1.53203 1.16580 1.84849 1.18414 1.23931 0.94773 0.92253 1.20750 0.94592 0.93375 0.97157 1.20990 1.07333 0.99808 0.94210 1.18206 0.86664 0.91591 0.93382 1.20268 1.27200 1.06091 0.94744 0.88652 1.27084 0.92235 0.98077 1.01271 1.69778 1.20525 1.21648 1.29512 0.85023 0.78859 0.77877 0.77091 1.18415 1.18998 1.17484 1.20882 1.12971 0.94553 0.98366 1.20522 0.93535 0.98322 0.91418 1.20189 0.78816 0.84677 0.84346 1.90784 1.40376 1.24476 1.86717 1.45308 1.58774 1.29098 1.03686 1.22582 1.04502 0.97480 0.80174 1.20315 0.75036 0.78313 0.85718 1.93240 1.85336 1.41121 1.96520 1.93235 1.88509 1.80688 1.53134 1.93239 1.29763 1.96198 1.96740 0.91236 0.86475 0.91030 0.87292 0.87157 0.88939 0.86531 0.86491 0.73869 0.86052 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 9.50 71.98 0.68 -2.47 16 2 C 0.06 1.65 2.98 29.85 0.09 1.74 16 3 H 0.12 3.00 7.16 -2.38 -0.02 2.99 16 4 O -0.34 -13.28 8.65 -50.49 -0.44 -13.71 16 5 C 0.52 22.48 7.86 70.27 0.55 23.03 16 6 O -0.56 -24.04 15.58 19.81 0.31 -23.73 16 7 C -0.29 -13.78 5.89 -19.95 -0.12 -13.90 16 8 C -0.04 -1.94 9.55 22.26 0.21 -1.73 16 9 C -0.20 -10.55 8.63 22.47 0.19 -10.35 16 10 C 0.11 5.41 5.57 -21.28 -0.12 5.30 16 11 C -0.46 -22.47 9.04 23.46 0.21 -22.26 16 12 H 0.10 4.39 7.91 -2.91 -0.02 4.37 16 13 C 0.03 1.54 5.13 85.36 0.44 1.97 16 14 N -0.79 -38.25 10.99 21.88 0.24 -38.01 16 15 Si 0.99 34.08 29.60 68.60 2.03 36.11 16 16 H -0.26 -8.70 7.11 99.48 0.71 -8.00 16 17 H -0.27 -8.71 7.11 99.48 0.71 -8.00 16 18 H -0.25 -8.33 7.11 99.48 0.71 -7.62 16 19 C -0.25 -11.88 9.73 22.47 0.22 -11.66 16 20 C -0.02 -0.90 9.52 22.26 0.21 -0.69 16 21 C 0.53 13.41 7.18 87.66 0.63 14.04 16 22 O -0.55 -18.86 16.51 15.72 0.26 -18.60 16 23 N -0.71 -10.77 5.37 -463.05 -2.49 -13.26 16 24 C 0.08 0.96 5.64 86.38 0.49 1.45 16 25 C 0.46 5.29 3.11 71.98 0.22 5.51 16 26 F -0.18 -2.39 17.18 44.97 0.77 -1.62 16 27 F -0.17 -2.27 17.32 44.97 0.78 -1.50 16 28 F -0.18 -2.16 17.18 44.97 0.77 -1.38 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.12 1.31 7.90 -2.38 -0.02 1.29 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.11 5.06 7.59 -2.91 -0.02 5.04 16 33 H 0.11 5.82 6.19 -2.91 -0.02 5.80 16 34 H 0.30 12.85 8.29 -92.71 -0.77 12.08 16 35 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 36 H 0.12 5.00 7.63 -2.91 -0.02 4.98 16 37 H 0.42 4.06 8.12 -92.71 -0.75 3.31 16 38 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -65.07 360.45 6.53 -58.53 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.38 Total: 27.19 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 3.92 Total: -10.02 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -2.25 Total: -51.27 kcal Atomic # 8 Polarization: -56.18 SS G_CDS: 0.13 Total: -56.05 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 2.32 Total: -4.50 kcal Atomic # 14 Polarization: 34.08 SS G_CDS: 2.03 Total: 36.11 kcal Total: -65.07 6.53 -58.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758696469.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -222.494 kcal (2) G-P(sol) polarization free energy of solvation -65.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -287.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -281.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds