Wall clock time and date at job start Wed Apr 1 2020 03:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.47051 * 2 1 4 4 O 1.45199 * 109.47359 * 240.00070 * 2 1 3 5 5 C 1.34775 * 117.00086 * 89.99611 * 4 2 1 6 6 O 1.21505 * 120.00052 * 0.02562 * 5 4 2 7 7 C 1.47506 * 119.99881 * 180.02562 * 5 4 2 8 8 C 1.40074 * 119.90068 * 180.02562 * 7 5 4 9 9 C 1.36300 * 120.10268 * 179.69843 * 8 7 5 10 10 C 1.40901 * 119.89681 * 0.28287 * 9 8 7 11 11 C 1.41088 * 120.09762 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99824 * 204.64650 * 11 10 9 13 13 C 1.40244 * 119.99910 * 24.63847 * 11 10 9 14 14 N 1.30633 * 120.00105 * 17.88774 * 13 11 10 15 15 Si 1.86802 * 119.99995 * 197.87719 * 13 11 10 16 16 H 1.48505 * 109.47060 * 60.00153 * 15 13 11 17 17 H 1.48496 * 109.47375 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47084 * 300.00541 * 15 13 11 19 19 C 1.40898 * 119.80165 * 359.97438 * 10 9 8 20 20 C 1.36301 * 119.89990 * 0.02562 * 19 10 9 21 21 C 1.50703 * 109.47040 * 119.99929 * 2 1 3 22 22 O 1.21274 * 119.99763 * 120.00043 * 21 2 1 23 23 N 1.34775 * 119.99581 * 300.00241 * 21 2 1 24 24 C 1.46506 * 119.99500 * 179.97438 * 23 21 2 25 25 C 1.52999 * 109.47251 * 179.97438 * 24 23 21 26 26 F 1.39897 * 109.46708 * 60.00019 * 25 24 23 27 27 F 1.39893 * 109.47311 * 180.02562 * 25 24 23 28 28 F 1.39902 * 109.47211 * 300.00224 * 25 24 23 29 29 H 1.09000 * 109.47295 * 299.99983 * 1 2 3 30 30 H 1.09003 * 109.46981 * 60.00258 * 1 2 3 31 31 H 1.09003 * 109.47051 * 180.02562 * 1 2 3 32 32 H 1.08004 * 119.94254 * 359.97438 * 8 7 5 33 33 H 1.07992 * 120.05043 * 180.29427 * 9 8 7 34 34 H 0.97005 * 120.00049 * 179.97438 * 14 13 11 35 35 H 1.08002 * 120.04811 * 180.02562 * 19 10 9 36 36 H 1.08001 * 119.95017 * 180.02562 * 20 19 10 37 37 H 0.96989 * 120.00506 * 359.97438 * 23 21 2 38 38 H 1.09003 * 109.47323 * 299.99984 * 24 23 21 39 39 H 1.09002 * 109.47265 * 59.99866 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6844 -1.1855 5 6 2.2180 0.0671 -2.2856 6 8 1.9978 1.2616 -2.2547 7 6 2.7085 -0.5606 -3.5270 8 6 2.9203 0.2225 -4.6689 9 6 3.3793 -0.3521 -5.8165 10 6 3.6352 -1.7372 -5.8547 11 6 4.1110 -2.3363 -7.0401 12 1 3.9382 -3.3869 -7.2211 13 6 4.8080 -1.5676 -7.9835 14 7 5.3219 -0.4174 -7.6376 15 14 5.0020 -2.1884 -9.7346 16 1 3.6611 -2.3757 -10.3448 17 1 5.7735 -1.1984 -10.5282 18 1 5.7259 -3.4850 -9.7228 19 6 3.4156 -2.5218 -4.7052 20 6 2.9565 -1.9387 -3.5620 21 6 2.0324 -0.7104 1.2305 22 8 2.7296 -1.6964 1.1192 23 7 1.7067 -0.2499 2.4545 24 6 2.1946 -0.9409 3.6508 25 6 1.6852 -0.2192 4.9000 26 9 0.2862 -0.2182 4.9000 27 9 2.1515 -0.8787 6.0422 28 9 2.1524 1.0995 4.9000 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.7237 1.2841 -4.6387 33 1 3.5468 0.2532 -6.6950 34 1 5.8043 0.1141 -8.2900 35 1 3.6109 -3.5838 -4.7299 36 1 2.7883 -2.5393 -2.6803 37 1 1.1494 0.5389 2.5435 38 1 1.8308 -1.9684 3.6506 39 1 3.2846 -0.9413 3.6510 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758696472.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:11 Heat of formation + Delta-G solvation = -264.978832 kcal Electronic energy + Delta-G solvation = -28936.923232 eV Core-core repulsion = 24008.081906 eV Total energy + Delta-G solvation = -4928.841326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.66605 -48.17580 -48.14113 -40.48482 -39.31736 -37.48550 -35.83962 -35.39872 -33.99812 -32.31214 -30.26066 -29.63015 -29.36697 -26.30056 -25.00243 -23.66104 -22.36605 -21.22705 -20.80074 -19.89651 -19.13553 -18.92478 -18.71325 -17.63086 -17.39411 -16.78756 -16.35037 -15.90926 -15.56914 -15.39741 -15.23906 -14.96237 -14.85778 -14.56378 -14.32094 -14.27970 -14.20905 -14.00927 -13.68434 -13.50137 -13.17911 -12.91444 -12.69375 -12.48930 -12.42072 -12.23208 -11.94304 -11.69501 -11.37384 -11.26821 -11.04802 -10.74480 -10.52363 -10.17796 -9.99848 -9.79745 -9.61330 -9.53673 -9.40381 -7.77324 -7.66562 -7.11882 -4.70152 1.88966 2.01077 2.24475 2.30689 2.86054 2.91049 2.94013 3.02237 3.14338 3.31435 3.46702 3.56907 3.68776 3.72680 4.28365 4.43383 4.61624 4.77641 4.80101 4.93737 5.23080 5.49579 5.55593 5.61304 5.83929 5.97569 6.20309 6.24742 6.72064 6.75644 6.80724 6.91831 7.03052 7.04919 7.39394 7.59355 7.73770 7.77217 7.84061 7.98904 8.33433 8.54039 8.62472 8.67895 9.79227 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.031944 B = 0.001832 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.310630 B =15280.183067 C =15564.771866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.072 3.928 3 H 0.112 0.888 4 O -0.332 6.332 5 C 0.515 3.485 6 O -0.550 6.550 7 C -0.275 4.275 8 C -0.031 4.031 9 C -0.185 4.185 10 C 0.132 3.868 11 C -0.432 4.432 12 H 0.088 0.912 13 C 0.072 3.928 14 N -0.762 5.762 15 Si 0.917 3.083 16 H -0.259 1.259 17 H -0.275 1.275 18 H -0.261 1.261 19 C -0.240 4.240 20 C -0.025 4.025 21 C 0.527 3.473 22 O -0.502 6.502 23 N -0.732 5.732 24 C 0.080 3.920 25 C 0.449 3.551 26 F -0.178 7.178 27 F -0.173 7.173 28 F -0.177 7.177 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.290 0.710 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.409 0.591 38 H 0.117 0.883 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.958 1.340 17.910 19.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.013 3.987 3 H 0.129 0.871 4 O -0.249 6.249 5 C 0.368 3.632 6 O -0.443 6.443 7 C -0.278 4.278 8 C -0.050 4.050 9 C -0.204 4.204 10 C 0.128 3.872 11 C -0.459 4.459 12 H 0.106 0.894 13 C -0.151 4.151 14 N -0.384 5.384 15 Si 0.740 3.260 16 H -0.183 1.183 17 H -0.199 1.199 18 H -0.185 1.185 19 C -0.259 4.259 20 C -0.043 4.043 21 C 0.313 3.687 22 O -0.373 6.373 23 N -0.390 5.390 24 C -0.046 4.046 25 C 0.394 3.606 26 F -0.159 7.159 27 F -0.154 7.154 28 F -0.159 7.159 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.141 0.859 34 H 0.101 0.899 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.245 0.755 38 H 0.135 0.865 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.348 1.148 17.778 18.912 hybrid contribution -0.147 0.482 -0.262 0.568 sum -6.495 1.630 17.516 18.752 Atomic orbital electron populations 1.22162 0.92125 1.03929 1.03917 1.22117 0.95702 0.97701 0.83179 0.87087 1.86762 1.78107 1.41111 1.18908 1.21725 0.73696 0.84816 0.82976 1.90690 1.52820 1.16468 1.84362 1.18150 1.23996 0.94419 0.91201 1.20445 0.95172 0.97682 0.91735 1.20974 1.05926 0.95831 0.97681 1.17857 0.85813 0.92078 0.91438 1.19913 1.27776 0.97446 1.00765 0.89431 1.26180 0.93171 0.94179 1.01549 1.69733 1.21397 1.10629 1.36670 0.86204 0.79799 0.79799 0.80193 1.18333 1.19938 1.18541 1.20730 1.12557 0.99049 0.93577 1.20593 0.93714 0.93029 0.96998 1.20404 0.80044 0.84710 0.83556 1.90784 1.35560 1.24910 1.86088 1.45565 1.55918 1.33170 1.04355 1.22451 1.03233 0.98000 0.80901 1.20531 0.75906 0.77953 0.86160 1.93234 1.29567 1.96370 1.96751 1.93233 1.88424 1.80661 1.53091 1.93242 1.88309 1.37584 1.96745 0.90784 0.90117 0.90865 0.88005 0.85891 0.89861 0.88143 0.87730 0.75539 0.86485 0.86517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.45 37.16 0.35 -1.42 16 2 C 0.07 1.01 2.99 -27.88 -0.08 0.93 16 3 H 0.11 1.51 7.16 -51.93 -0.37 1.14 16 4 O -0.33 -6.30 8.64 -47.38 -0.41 -6.71 16 5 C 0.51 11.09 7.86 34.51 0.27 11.36 16 6 O -0.55 -12.21 15.58 -19.27 -0.30 -12.51 16 7 C -0.28 -6.43 5.89 -104.75 -0.62 -7.05 16 8 C -0.03 -0.76 9.52 -39.59 -0.38 -1.13 16 9 C -0.19 -4.63 8.63 -39.27 -0.34 -4.97 16 10 C 0.13 3.32 5.58 -106.80 -0.60 2.72 16 11 C -0.43 -10.51 9.04 -37.75 -0.34 -10.85 16 12 H 0.09 2.00 7.91 -52.49 -0.42 1.59 16 13 C 0.07 1.65 5.14 -17.31 -0.09 1.56 16 14 N -0.76 -18.12 10.95 55.56 0.61 -17.51 16 15 Si 0.92 16.89 29.60 -169.99 -5.03 11.85 16 16 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 17 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 18 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 19 C -0.24 -5.66 9.73 -39.27 -0.38 -6.04 16 20 C -0.02 -0.56 9.55 -39.59 -0.38 -0.94 16 21 C 0.53 6.80 7.23 -10.98 -0.08 6.72 16 22 O -0.50 -8.49 16.50 -14.10 -0.23 -8.73 16 23 N -0.73 -6.17 5.31 -60.29 -0.32 -6.49 16 24 C 0.08 0.55 5.64 -4.04 -0.02 0.53 16 25 C 0.45 2.97 3.11 37.16 0.12 3.09 16 26 F -0.18 -1.27 17.18 2.25 0.04 -1.23 16 27 F -0.17 -1.25 17.32 2.25 0.04 -1.21 16 28 F -0.18 -1.33 17.18 2.25 0.04 -1.29 16 29 H 0.07 0.53 7.56 -51.93 -0.39 0.13 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.10 2.34 7.63 -52.48 -0.40 1.94 16 33 H 0.12 3.11 6.15 -52.49 -0.32 2.78 16 34 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 35 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 36 H 0.10 2.20 7.59 -52.49 -0.40 1.80 16 37 H 0.41 2.50 7.78 -40.82 -0.32 2.18 16 38 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 359.64 15.07 5.42 5.42 Total: -1.00 -29.77 359.64 -6.58 -36.35 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -3.87 Total: 7.55 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -2.57 Total: -5.49 kcal Atomic # 7 Polarization: -24.29 SS G_CDS: 0.29 Total: -24.00 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.94 Total: -27.95 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.12 Total: -3.73 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.03 Total: 11.85 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.77 -6.58 -36.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758696472.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -228.631 kcal (2) G-P(sol) polarization free energy of solvation -29.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -264.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds