Wall clock time and date at job start Wed Apr 1 2020 03:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.47051 * 2 1 4 4 O 1.45199 * 109.47359 * 240.00070 * 2 1 3 5 5 C 1.34775 * 117.00086 * 89.99611 * 4 2 1 6 6 O 1.21505 * 120.00052 * 0.02562 * 5 4 2 7 7 C 1.47506 * 119.99881 * 180.02562 * 5 4 2 8 8 C 1.40074 * 119.90068 * 180.02562 * 7 5 4 9 9 C 1.36300 * 120.10268 * 179.69843 * 8 7 5 10 10 C 1.40901 * 119.89681 * 0.28287 * 9 8 7 11 11 C 1.41088 * 120.09762 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99824 * 204.64650 * 11 10 9 13 13 C 1.40244 * 119.99910 * 24.63847 * 11 10 9 14 14 N 1.30633 * 120.00105 * 17.88774 * 13 11 10 15 15 Si 1.86802 * 119.99995 * 197.87719 * 13 11 10 16 16 H 1.48505 * 109.47060 * 60.00153 * 15 13 11 17 17 H 1.48496 * 109.47375 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47084 * 300.00541 * 15 13 11 19 19 C 1.40898 * 119.80165 * 359.97438 * 10 9 8 20 20 C 1.36301 * 119.89990 * 0.02562 * 19 10 9 21 21 C 1.50703 * 109.47040 * 119.99929 * 2 1 3 22 22 O 1.21274 * 119.99763 * 120.00043 * 21 2 1 23 23 N 1.34775 * 119.99581 * 300.00241 * 21 2 1 24 24 C 1.46506 * 119.99500 * 179.97438 * 23 21 2 25 25 C 1.52999 * 109.47251 * 179.97438 * 24 23 21 26 26 F 1.39897 * 109.46708 * 60.00019 * 25 24 23 27 27 F 1.39893 * 109.47311 * 180.02562 * 25 24 23 28 28 F 1.39902 * 109.47211 * 300.00224 * 25 24 23 29 29 H 1.09000 * 109.47295 * 299.99983 * 1 2 3 30 30 H 1.09003 * 109.46981 * 60.00258 * 1 2 3 31 31 H 1.09003 * 109.47051 * 180.02562 * 1 2 3 32 32 H 1.08004 * 119.94254 * 359.97438 * 8 7 5 33 33 H 1.07992 * 120.05043 * 180.29427 * 9 8 7 34 34 H 0.97005 * 120.00049 * 179.97438 * 14 13 11 35 35 H 1.08002 * 120.04811 * 180.02562 * 19 10 9 36 36 H 1.08001 * 119.95017 * 180.02562 * 20 19 10 37 37 H 0.96989 * 120.00506 * 359.97438 * 23 21 2 38 38 H 1.09003 * 109.47323 * 299.99984 * 24 23 21 39 39 H 1.09002 * 109.47265 * 59.99866 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6844 -1.1855 5 6 2.2180 0.0671 -2.2856 6 8 1.9978 1.2616 -2.2547 7 6 2.7085 -0.5606 -3.5270 8 6 2.9203 0.2225 -4.6689 9 6 3.3793 -0.3521 -5.8165 10 6 3.6352 -1.7372 -5.8547 11 6 4.1110 -2.3363 -7.0401 12 1 3.9382 -3.3869 -7.2211 13 6 4.8080 -1.5676 -7.9835 14 7 5.3219 -0.4174 -7.6376 15 14 5.0020 -2.1884 -9.7346 16 1 3.6611 -2.3757 -10.3448 17 1 5.7735 -1.1984 -10.5282 18 1 5.7259 -3.4850 -9.7228 19 6 3.4156 -2.5218 -4.7052 20 6 2.9565 -1.9387 -3.5620 21 6 2.0324 -0.7104 1.2305 22 8 2.7296 -1.6964 1.1192 23 7 1.7067 -0.2499 2.4545 24 6 2.1946 -0.9409 3.6508 25 6 1.6852 -0.2192 4.9000 26 9 0.2862 -0.2182 4.9000 27 9 2.1515 -0.8787 6.0422 28 9 2.1524 1.0995 4.9000 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.7237 1.2841 -4.6387 33 1 3.5468 0.2532 -6.6950 34 1 5.8043 0.1141 -8.2900 35 1 3.6109 -3.5838 -4.7299 36 1 2.7883 -2.5393 -2.6803 37 1 1.1494 0.5389 2.5435 38 1 1.8308 -1.9684 3.6506 39 1 3.2846 -0.9413 3.6510 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758696472.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:10 Heat of formation + Delta-G solvation = -280.870859 kcal Electronic energy + Delta-G solvation = -28937.612362 eV Core-core repulsion = 24008.081906 eV Total energy + Delta-G solvation = -4929.530456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -51.23480 -48.74618 -48.71069 -41.76656 -40.67818 -39.25085 -37.35053 -36.34053 -35.77592 -33.41267 -32.03607 -31.42103 -30.17766 -28.04014 -26.02623 -24.57257 -23.80248 -22.94571 -21.99394 -21.46573 -19.70191 -19.60117 -19.54527 -19.40991 -18.89103 -17.89044 -17.53101 -17.20320 -16.94638 -16.68959 -16.32632 -15.77636 -15.65035 -15.56633 -15.27481 -15.17179 -15.13253 -14.85536 -14.85239 -14.72536 -14.54887 -14.27507 -14.05227 -13.93176 -13.65664 -13.38094 -13.30723 -13.04540 -12.87624 -12.68393 -12.66881 -12.40119 -11.90101 -11.84605 -11.42994 -11.31500 -11.15461 -11.06928 -10.61709 -9.64368 -9.53469 -8.85561 -6.55820 0.22156 1.04588 1.13822 1.22930 1.37074 1.42029 1.53398 1.58773 1.87068 2.10889 2.14754 2.58525 2.67321 2.91574 3.07771 3.37264 3.61606 3.74807 3.85816 4.07721 4.09231 4.25148 4.35086 4.42534 4.62510 4.63333 4.81577 4.92655 4.97403 5.05740 5.14624 5.20123 5.33190 5.54730 5.76541 5.91334 5.96936 6.02266 6.14752 6.48419 6.69452 6.79730 6.81327 6.97408 8.08992 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.031944 B = 0.001832 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.310630 B =15280.183067 C =15564.771866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.060 3.940 3 H 0.116 0.884 4 O -0.342 6.342 5 C 0.523 3.477 6 O -0.561 6.561 7 C -0.292 4.292 8 C -0.037 4.037 9 C -0.202 4.202 10 C 0.105 3.895 11 C -0.457 4.457 12 H 0.096 0.904 13 C 0.033 3.967 14 N -0.792 5.792 15 Si 0.993 3.007 16 H -0.256 1.256 17 H -0.266 1.266 18 H -0.254 1.254 19 C -0.252 4.252 20 C -0.021 4.021 21 C 0.535 3.465 22 O -0.547 6.547 23 N -0.711 5.711 24 C 0.078 3.922 25 C 0.460 3.540 26 F -0.178 7.178 27 F -0.174 7.174 28 F -0.181 7.181 29 H 0.116 0.884 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.300 0.700 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.422 0.578 38 H 0.128 0.872 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.528 1.073 18.670 20.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.002 3.998 3 H 0.134 0.866 4 O -0.259 6.259 5 C 0.375 3.625 6 O -0.456 6.456 7 C -0.294 4.294 8 C -0.056 4.056 9 C -0.221 4.221 10 C 0.101 3.899 11 C -0.483 4.483 12 H 0.114 0.886 13 C -0.187 4.187 14 N -0.415 5.415 15 Si 0.812 3.188 16 H -0.180 1.180 17 H -0.190 1.190 18 H -0.178 1.178 19 C -0.271 4.271 20 C -0.040 4.040 21 C 0.321 3.679 22 O -0.423 6.423 23 N -0.369 5.369 24 C -0.047 4.047 25 C 0.406 3.594 26 F -0.160 7.160 27 F -0.156 7.156 28 F -0.163 7.163 29 H 0.135 0.865 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.111 0.889 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.261 0.739 38 H 0.146 0.854 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.949 0.914 18.605 19.882 hybrid contribution -0.001 0.623 -0.319 0.699 sum -6.950 1.536 18.287 19.623 Atomic orbital electron populations 1.22188 0.89470 1.04508 1.05376 1.22598 0.97853 0.97602 0.81755 0.86640 1.86686 1.78010 1.41463 1.19697 1.21314 0.73329 0.84498 0.83331 1.90669 1.53216 1.16841 1.84848 1.18397 1.24062 0.94858 0.92096 1.20532 0.95143 0.97968 0.91978 1.20953 1.07236 0.96125 0.97816 1.18201 0.86684 0.92421 0.92571 1.20245 1.28397 0.98242 1.01381 0.88611 1.27096 0.92098 0.94044 1.05458 1.69770 1.21574 1.11690 1.38452 0.85075 0.79847 0.79438 0.74463 1.18014 1.18985 1.17792 1.20937 1.12889 0.99776 0.93482 1.20744 0.92979 0.93002 0.97276 1.20139 0.79477 0.83981 0.84284 1.90774 1.37812 1.26933 1.86769 1.45314 1.54910 1.33125 1.03538 1.22586 1.03679 0.98375 0.80055 1.20334 0.75717 0.77578 0.85811 1.93238 1.29634 1.96349 1.96738 1.93234 1.88468 1.80710 1.53155 1.93241 1.88365 1.37906 1.96746 0.86537 0.91425 0.90721 0.87707 0.86868 0.88902 0.86728 0.86125 0.73903 0.85435 0.85983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 9.45 71.98 0.68 -2.40 16 2 C 0.06 1.61 2.99 29.85 0.09 1.70 16 3 H 0.12 2.99 7.16 -2.39 -0.02 2.97 16 4 O -0.34 -12.86 8.64 -50.47 -0.44 -13.30 16 5 C 0.52 22.57 7.86 70.27 0.55 23.12 16 6 O -0.56 -24.87 15.58 19.82 0.31 -24.56 16 7 C -0.29 -13.84 5.89 -19.95 -0.12 -13.96 16 8 C -0.04 -1.85 9.52 22.26 0.21 -1.64 16 9 C -0.20 -10.47 8.63 22.47 0.19 -10.27 16 10 C 0.10 5.40 5.58 -21.28 -0.12 5.28 16 11 C -0.46 -22.44 9.04 23.46 0.21 -22.23 16 12 H 0.10 4.39 7.91 -2.91 -0.02 4.37 16 13 C 0.03 1.52 5.14 85.36 0.44 1.96 16 14 N -0.79 -38.10 10.95 21.87 0.24 -37.86 16 15 Si 0.99 33.94 29.60 68.60 2.03 35.97 16 16 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 17 H -0.27 -8.62 7.11 99.48 0.71 -7.91 16 18 H -0.25 -8.36 7.11 99.48 0.71 -7.65 16 19 C -0.25 -12.04 9.73 22.47 0.22 -11.82 16 20 C -0.02 -0.99 9.55 22.26 0.21 -0.77 16 21 C 0.54 13.01 7.23 87.66 0.63 13.64 16 22 O -0.55 -18.14 16.50 15.79 0.26 -17.88 16 23 N -0.71 -10.33 5.31 -463.05 -2.46 -12.79 16 24 C 0.08 0.91 5.64 86.38 0.49 1.40 16 25 C 0.46 5.06 3.11 71.98 0.22 5.28 16 26 F -0.18 -2.09 17.18 44.97 0.77 -1.32 16 27 F -0.17 -2.19 17.32 44.97 0.78 -1.41 16 28 F -0.18 -2.32 17.18 44.97 0.77 -1.55 16 29 H 0.12 1.24 7.56 -2.39 -0.02 1.22 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.10 4.98 7.63 -2.91 -0.02 4.95 16 33 H 0.11 5.96 6.15 -2.91 -0.02 5.94 16 34 H 0.30 12.83 8.29 -92.70 -0.77 12.06 16 35 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 36 H 0.12 5.06 7.59 -2.91 -0.02 5.03 16 37 H 0.42 3.88 7.78 -92.72 -0.72 3.16 16 38 H 0.13 1.33 8.14 -2.39 -0.02 1.32 16 39 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -65.10 359.64 6.60 -58.51 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.41 Total: 26.89 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 3.92 Total: -10.70 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -2.22 Total: -50.65 kcal Atomic # 8 Polarization: -55.88 SS G_CDS: 0.13 Total: -55.74 kcal Atomic # 9 Polarization: -6.60 SS G_CDS: 2.32 Total: -4.28 kcal Atomic # 14 Polarization: 33.94 SS G_CDS: 2.03 Total: 35.97 kcal Total: -65.10 6.60 -58.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758696472.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -222.364 kcal (2) G-P(sol) polarization free energy of solvation -65.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -287.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -280.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds