Wall clock time and date at job start Wed Apr 1 2020 03:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47302 * 2 1 4 4 O 1.45203 * 109.47334 * 119.99695 * 2 1 3 5 5 C 1.34749 * 117.00325 * 270.00242 * 4 2 1 6 6 O 1.21501 * 119.99627 * 359.97438 * 5 4 2 7 7 C 1.47413 * 120.00229 * 179.97438 * 5 4 2 8 8 C 1.39985 * 120.18346 * 270.00492 * 7 5 4 9 9 F 1.35102 * 120.07619 * 0.02562 * 8 7 5 10 10 C 1.38152 * 119.84627 * 180.02562 * 8 7 5 11 11 C 1.38342 * 120.22173 * 359.97047 * 10 8 7 12 12 C 1.38450 * 120.36922 * 0.02562 * 11 10 8 13 13 F 1.35104 * 119.92376 * 180.02562 * 12 11 10 14 14 C 1.38438 * 120.15221 * 359.76147 * 12 11 10 15 15 F 1.35095 * 120.11102 * 180.25872 * 14 12 11 16 16 C 1.50704 * 109.47206 * 240.00015 * 2 1 3 17 17 O 1.21277 * 119.99609 * 256.02174 * 16 2 1 18 18 N 1.34770 * 119.99988 * 76.02693 * 16 2 1 19 19 C 1.46505 * 120.00163 * 5.36190 * 18 16 2 20 20 C 1.46492 * 119.99995 * 185.36709 * 18 16 2 21 21 C 1.50706 * 109.47383 * 89.99778 * 20 18 16 22 22 H 1.08003 * 119.99717 * 0.02562 * 21 20 18 23 23 C 1.37875 * 120.00132 * 180.02562 * 21 20 18 24 24 N 1.31519 * 119.99880 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00189 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47035 * 59.99844 * 25 23 21 27 27 H 1.48498 * 109.47209 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47100 * 300.00017 * 25 23 21 29 29 H 1.08996 * 109.47066 * 186.13842 * 1 2 3 30 30 H 1.08996 * 109.47391 * 66.13644 * 1 2 3 31 31 H 1.09002 * 109.47301 * 306.13413 * 1 2 3 32 32 H 1.08004 * 119.89021 * 179.97438 * 10 8 7 33 33 H 1.08000 * 119.81982 * 180.02562 * 11 10 8 34 34 H 1.09000 * 109.47126 * 84.82548 * 19 18 16 35 35 H 1.08997 * 109.47350 * 204.82954 * 19 18 16 36 36 H 1.09000 * 109.46993 * 324.82627 * 19 18 16 37 37 H 1.09003 * 109.47777 * 209.99457 * 20 18 16 38 38 H 1.09000 * 109.47111 * 329.99601 * 20 18 16 39 39 H 0.97005 * 119.99915 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2179 0.0670 2.2854 6 8 1.9977 1.2614 2.2544 7 6 2.7082 -0.5602 3.5261 8 6 1.8012 -1.0610 4.4675 9 9 0.4722 -0.9716 4.2415 10 6 2.2683 -1.6470 5.6282 11 6 3.6285 -1.7407 5.8623 12 6 4.5335 -1.2485 4.9374 13 9 5.8600 -1.3452 5.1750 14 6 4.0825 -0.6623 3.7671 15 9 4.9665 -0.1870 2.8628 16 6 2.0323 -0.7104 -1.2305 17 8 2.4736 -1.8366 -1.1427 18 7 1.9913 -0.0942 -2.4283 19 6 1.5689 1.3058 -2.5178 20 6 2.3688 -0.8243 -3.6410 21 6 1.1505 -1.4919 -4.2252 22 1 0.1909 -1.3828 -3.7418 23 6 1.2610 -2.2419 -5.3769 24 7 2.4295 -2.3742 -5.9658 25 14 -0.2489 -3.0700 -6.1007 26 1 -1.2638 -2.0401 -6.4392 27 1 0.1339 -3.8099 -7.3300 28 1 -0.8171 -4.0177 -5.1086 29 1 -0.3633 -1.0217 0.1099 30 1 -0.3634 0.4157 -0.9398 31 1 -0.3634 0.6060 0.8300 32 1 1.5691 -2.0333 6.3551 33 1 3.9865 -2.2004 6.7717 34 1 2.4228 1.9558 -2.3268 35 1 1.1773 1.5042 -3.5155 36 1 0.7924 1.4991 -1.7777 37 1 2.7860 -0.1285 -4.3690 38 1 3.1136 -1.5804 -3.3928 39 1 2.5072 -2.9016 -6.7763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772730411.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:38 Heat of formation + Delta-G solvation = -211.222228 kcal Electronic energy + Delta-G solvation = -30167.932817 eV Core-core repulsion = 25241.422552 eV Total energy + Delta-G solvation = -4926.510265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.05003 -49.64502 -49.11069 -40.92177 -39.34094 -38.70756 -36.57483 -34.93044 -32.93553 -32.36196 -31.39487 -30.66976 -27.82122 -26.17184 -25.77105 -24.30728 -23.57468 -22.73970 -21.35551 -19.15235 -18.90597 -18.67336 -18.52747 -17.58465 -17.00946 -16.84358 -16.58634 -16.43158 -16.07284 -16.00129 -15.80321 -15.46445 -15.22060 -15.08825 -14.95343 -14.65493 -14.35251 -13.75552 -13.60532 -13.33004 -13.02399 -12.78549 -12.49399 -12.40587 -12.35336 -12.20585 -12.09692 -11.79112 -11.52269 -11.26039 -11.03968 -10.94525 -10.84480 -10.58477 -10.20021 -9.89595 -9.70262 -9.28442 -8.97441 -8.46955 -7.75994 -6.08061 -4.13766 -0.09911 0.10331 1.60329 2.04393 2.46196 2.90454 3.17713 3.29869 3.30539 3.34615 3.37910 3.64629 3.74549 3.87626 4.03972 4.26344 4.40850 4.67726 4.76699 4.87722 4.95854 5.01925 5.03986 5.11629 5.25107 5.26386 5.47817 5.58904 5.65893 5.83864 5.89525 6.02181 6.12311 6.21071 6.94226 7.29679 7.37247 7.44889 7.87356 8.16907 8.24587 8.79502 8.94784 9.51365 11.00039 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.016983 B = 0.002656 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.283207 B =10541.419139 C =10858.677135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.068 3.932 3 H 0.106 0.894 4 O -0.310 6.310 5 C 0.517 3.483 6 O -0.479 6.479 7 C -0.148 4.148 8 C 0.166 3.834 9 F -0.112 7.112 10 C -0.133 4.133 11 C -0.073 4.073 12 C 0.062 3.938 13 F -0.116 7.116 14 C 0.142 3.858 15 F -0.104 7.104 16 C 0.511 3.489 17 O -0.518 6.518 18 N -0.595 5.595 19 C 0.072 3.928 20 C 0.246 3.754 21 C -0.532 4.532 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.893 5.893 25 Si 0.900 3.100 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.276 1.276 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.166 0.834 33 H 0.166 0.834 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.037 0.963 38 H 0.047 0.953 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.357 5.487 25.268 25.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.010 3.990 3 H 0.124 0.876 4 O -0.225 6.225 5 C 0.357 3.643 6 O -0.365 6.365 7 C -0.152 4.152 8 C 0.145 3.855 9 F -0.090 7.090 10 C -0.152 4.152 11 C -0.092 4.092 12 C 0.041 3.959 13 F -0.094 7.094 14 C 0.121 3.879 15 F -0.082 7.082 16 C 0.295 3.705 17 O -0.393 6.393 18 N -0.328 5.328 19 C -0.072 4.072 20 C 0.127 3.873 21 C -0.570 4.570 22 H 0.076 0.924 23 C -0.140 4.140 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.183 0.817 33 H 0.184 0.816 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.057 5.177 25.012 25.542 hybrid contribution -0.689 -0.153 -0.806 1.071 sum -0.746 5.024 24.207 24.734 Atomic orbital electron populations 1.22185 0.91615 1.04440 1.04065 1.22857 0.96440 0.97502 0.82193 0.87636 1.86782 1.75799 1.40679 1.19193 1.20433 0.74790 0.85231 0.83795 1.90890 1.46623 1.15102 1.83923 1.18917 0.92128 1.08378 0.95749 1.17211 0.77518 0.97074 0.93658 1.91624 1.29345 1.93516 1.94505 1.21026 0.96188 1.01264 0.96699 1.21117 0.91495 0.97401 0.99189 1.17375 0.79453 1.04378 0.94661 1.91602 1.29497 1.94198 1.94108 1.17173 0.85231 0.97746 0.87709 1.91651 1.66534 1.85059 1.64937 1.19664 0.80338 0.86847 0.83700 1.90706 1.45054 1.18342 1.85248 1.48073 1.65211 1.11946 1.07614 1.21855 0.99047 0.82606 1.03642 1.19381 0.96720 0.92093 0.79073 1.21387 0.94744 1.31621 1.09276 0.92374 1.24939 0.96289 0.96089 0.96707 1.69926 1.23233 1.40345 1.19687 0.86536 0.82724 0.79632 0.78404 1.20201 1.21127 1.20119 0.90384 0.89097 0.91101 0.81667 0.81617 0.93322 0.89935 0.92246 0.94539 0.93536 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 9.19 37.16 0.34 -2.05 16 2 C 0.07 1.18 2.14 -27.88 -0.06 1.12 16 3 H 0.11 1.65 6.32 -51.93 -0.33 1.32 16 4 O -0.31 -5.49 9.48 -47.15 -0.45 -5.93 16 5 C 0.52 8.02 6.66 34.47 0.23 8.25 16 6 O -0.48 -7.88 16.37 -19.27 -0.32 -8.19 16 7 C -0.15 -1.83 5.76 -104.88 -0.60 -2.44 16 8 C 0.17 1.57 7.29 -38.96 -0.28 1.29 16 9 F -0.11 -1.18 16.83 2.25 0.04 -1.14 16 10 C -0.13 -0.73 10.01 -39.57 -0.40 -1.13 16 11 C -0.07 -0.38 10.01 -39.46 -0.39 -0.78 16 12 C 0.06 0.54 7.29 -39.43 -0.29 0.25 16 13 F -0.12 -1.09 17.18 2.25 0.04 -1.05 16 14 C 0.14 1.66 7.30 -38.88 -0.28 1.37 16 15 F -0.10 -1.44 16.74 2.25 0.04 -1.40 16 16 C 0.51 11.14 6.95 -10.99 -0.08 11.06 16 17 O -0.52 -13.62 16.13 -13.54 -0.22 -13.84 16 18 N -0.59 -12.75 2.86 -182.95 -0.52 -13.28 16 19 C 0.07 1.14 9.79 59.85 0.59 1.73 16 20 C 0.25 6.43 5.18 -5.20 -0.03 6.40 16 21 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 22 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 23 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 25 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.09 1.23 6.33 -51.93 -0.33 0.90 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.17 0.37 8.06 -52.48 -0.42 -0.06 16 33 H 0.17 0.29 8.06 -52.49 -0.42 -0.14 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 36 H 0.06 0.78 4.92 -51.93 -0.26 0.52 16 37 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 38 H 0.05 1.38 7.36 -51.93 -0.38 0.99 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 359.82 15.07 5.42 5.42 Total: -1.00 -35.22 359.82 -5.72 -40.94 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: -3.79 Total: -3.97 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: -1.68 Total: 11.52 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.21 Total: -38.97 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.98 Total: -27.96 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.11 Total: -3.59 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.22 -5.72 -40.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772730411.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.284 kcal (2) G-P(sol) polarization free energy of solvation -35.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds