Wall clock time and date at job start Wed Apr 1 2020 03:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47302 * 2 1 4 4 O 1.45203 * 109.47334 * 119.99695 * 2 1 3 5 5 C 1.34749 * 117.00325 * 270.00242 * 4 2 1 6 6 O 1.21501 * 119.99627 * 359.97438 * 5 4 2 7 7 C 1.47413 * 120.00229 * 179.97438 * 5 4 2 8 8 C 1.39985 * 120.18346 * 270.00492 * 7 5 4 9 9 F 1.35102 * 120.07619 * 0.02562 * 8 7 5 10 10 C 1.38152 * 119.84627 * 180.02562 * 8 7 5 11 11 C 1.38342 * 120.22173 * 359.97047 * 10 8 7 12 12 C 1.38450 * 120.36922 * 0.02562 * 11 10 8 13 13 F 1.35104 * 119.92376 * 180.02562 * 12 11 10 14 14 C 1.38438 * 120.15221 * 359.76147 * 12 11 10 15 15 F 1.35095 * 120.11102 * 180.25872 * 14 12 11 16 16 C 1.50704 * 109.47206 * 240.00015 * 2 1 3 17 17 O 1.21277 * 119.99609 * 256.02174 * 16 2 1 18 18 N 1.34770 * 119.99988 * 76.02693 * 16 2 1 19 19 C 1.46505 * 120.00163 * 5.36190 * 18 16 2 20 20 C 1.46492 * 119.99995 * 185.36709 * 18 16 2 21 21 C 1.50706 * 109.47383 * 89.99778 * 20 18 16 22 22 H 1.08003 * 119.99717 * 0.02562 * 21 20 18 23 23 C 1.37875 * 120.00132 * 180.02562 * 21 20 18 24 24 N 1.31519 * 119.99880 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00189 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47035 * 59.99844 * 25 23 21 27 27 H 1.48498 * 109.47209 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47100 * 300.00017 * 25 23 21 29 29 H 1.08996 * 109.47066 * 186.13842 * 1 2 3 30 30 H 1.08996 * 109.47391 * 66.13644 * 1 2 3 31 31 H 1.09002 * 109.47301 * 306.13413 * 1 2 3 32 32 H 1.08004 * 119.89021 * 179.97438 * 10 8 7 33 33 H 1.08000 * 119.81982 * 180.02562 * 11 10 8 34 34 H 1.09000 * 109.47126 * 84.82548 * 19 18 16 35 35 H 1.08997 * 109.47350 * 204.82954 * 19 18 16 36 36 H 1.09000 * 109.46993 * 324.82627 * 19 18 16 37 37 H 1.09003 * 109.47777 * 209.99457 * 20 18 16 38 38 H 1.09000 * 109.47111 * 329.99601 * 20 18 16 39 39 H 0.97005 * 119.99915 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2179 0.0670 2.2854 6 8 1.9977 1.2614 2.2544 7 6 2.7082 -0.5602 3.5261 8 6 1.8012 -1.0610 4.4675 9 9 0.4722 -0.9716 4.2415 10 6 2.2683 -1.6470 5.6282 11 6 3.6285 -1.7407 5.8623 12 6 4.5335 -1.2485 4.9374 13 9 5.8600 -1.3452 5.1750 14 6 4.0825 -0.6623 3.7671 15 9 4.9665 -0.1870 2.8628 16 6 2.0323 -0.7104 -1.2305 17 8 2.4736 -1.8366 -1.1427 18 7 1.9913 -0.0942 -2.4283 19 6 1.5689 1.3058 -2.5178 20 6 2.3688 -0.8243 -3.6410 21 6 1.1505 -1.4919 -4.2252 22 1 0.1909 -1.3828 -3.7418 23 6 1.2610 -2.2419 -5.3769 24 7 2.4295 -2.3742 -5.9658 25 14 -0.2489 -3.0700 -6.1007 26 1 -1.2638 -2.0401 -6.4392 27 1 0.1339 -3.8099 -7.3300 28 1 -0.8171 -4.0177 -5.1086 29 1 -0.3633 -1.0217 0.1099 30 1 -0.3634 0.4157 -0.9398 31 1 -0.3634 0.6060 0.8300 32 1 1.5691 -2.0333 6.3551 33 1 3.9865 -2.2004 6.7717 34 1 2.4228 1.9558 -2.3268 35 1 1.1773 1.5042 -3.5155 36 1 0.7924 1.4991 -1.7777 37 1 2.7860 -0.1285 -4.3690 38 1 3.1136 -1.5804 -3.3928 39 1 2.5072 -2.9016 -6.7763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772730411.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:38 Heat of formation + Delta-G solvation = -232.779272 kcal Electronic energy + Delta-G solvation = -30168.867600 eV Core-core repulsion = 25241.422552 eV Total energy + Delta-G solvation = -4927.445049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.87858 -50.38434 -49.90460 -42.18609 -40.75272 -39.66815 -37.89616 -36.76094 -34.90175 -33.51432 -32.51847 -31.34147 -29.74903 -27.66050 -26.78332 -25.87624 -24.35643 -24.22860 -22.56394 -20.56607 -20.08452 -19.51929 -19.29475 -18.72146 -18.66364 -18.15763 -17.78070 -17.53896 -17.30621 -17.09408 -16.80900 -16.79339 -16.30668 -16.27888 -16.15994 -15.74589 -15.63246 -14.96346 -14.85351 -14.43759 -14.24629 -14.16303 -13.79254 -13.62593 -13.62066 -13.39465 -13.18774 -13.15511 -13.07442 -12.92192 -12.73146 -12.55337 -12.21996 -12.16509 -12.13281 -11.76290 -10.75761 -10.65893 -10.56782 -9.97365 -9.58706 -8.24775 -6.40195 -0.79495 -0.55757 0.43965 0.93521 1.37010 1.41745 1.46983 1.52064 1.81973 2.12333 2.20651 2.38892 2.64112 3.00340 3.05446 3.08701 3.27546 3.35858 3.43503 3.60468 3.70177 3.94331 4.22512 4.27846 4.41907 4.48810 4.50739 4.59099 4.62297 4.73849 4.78435 4.83896 4.96405 5.01537 5.16764 5.31516 5.47112 5.74089 6.00082 6.07475 6.50602 6.68064 7.11846 7.32140 8.82921 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.016983 B = 0.002656 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.283207 B =10541.419139 C =10858.677135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.076 3.924 3 H 0.124 0.876 4 O -0.332 6.332 5 C 0.517 3.483 6 O -0.495 6.495 7 C -0.179 4.179 8 C 0.156 3.844 9 F -0.120 7.120 10 C -0.103 4.103 11 C -0.042 4.042 12 C 0.060 3.940 13 F -0.122 7.122 14 C 0.110 3.890 15 F -0.130 7.130 16 C 0.502 3.498 17 O -0.577 6.577 18 N -0.598 5.598 19 C 0.065 3.935 20 C 0.259 3.741 21 C -0.547 4.547 22 H 0.060 0.940 23 C 0.008 3.992 24 N -0.929 5.929 25 Si 0.971 3.029 26 H -0.258 1.258 27 H -0.280 1.280 28 H -0.276 1.276 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.213 0.787 33 H 0.216 0.784 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.031 0.969 38 H -0.001 1.001 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.416 5.569 28.035 28.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.018 3.982 3 H 0.141 0.859 4 O -0.248 6.248 5 C 0.359 3.641 6 O -0.382 6.382 7 C -0.182 4.182 8 C 0.136 3.864 9 F -0.098 7.098 10 C -0.121 4.121 11 C -0.060 4.060 12 C 0.040 3.960 13 F -0.100 7.100 14 C 0.089 3.911 15 F -0.108 7.108 16 C 0.288 3.712 17 O -0.457 6.457 18 N -0.330 5.330 19 C -0.077 4.077 20 C 0.138 3.862 21 C -0.585 4.585 22 H 0.078 0.922 23 C -0.191 4.191 24 N -0.568 5.568 25 Si 0.794 3.206 26 H -0.182 1.182 27 H -0.205 1.205 28 H -0.202 1.202 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.230 0.770 33 H 0.232 0.768 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.049 0.951 38 H 0.017 0.983 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.132 5.323 27.793 28.378 hybrid contribution 0.021 -0.177 -1.562 1.572 sum -2.112 5.145 26.231 26.814 Atomic orbital electron populations 1.22199 0.89148 1.04515 1.05748 1.22762 0.98043 0.97089 0.80291 0.85859 1.86787 1.76305 1.41781 1.19886 1.21008 0.73987 0.85165 0.83976 1.90848 1.47437 1.15674 1.84243 1.18940 0.93018 1.11035 0.95211 1.17563 0.76789 0.97612 0.94448 1.91602 1.29873 1.93662 1.94708 1.21570 0.97005 0.98288 0.95253 1.21697 0.90520 0.94578 0.99200 1.17645 0.79781 1.04254 0.94349 1.91589 1.30161 1.94221 1.94024 1.17534 0.84853 0.99838 0.88835 1.91571 1.67280 1.85802 1.66159 1.20507 0.79210 0.86402 0.85038 1.90663 1.47603 1.21077 1.86316 1.48061 1.64762 1.13871 1.06320 1.22189 1.01062 0.79457 1.04965 1.18888 0.95317 0.91298 0.80688 1.21674 0.95128 1.32115 1.09619 0.92178 1.25897 0.99546 0.96589 0.97116 1.70056 1.25509 1.41074 1.20177 0.85422 0.78951 0.78732 0.77450 1.18200 1.20478 1.20181 0.91373 0.87873 0.88595 0.77047 0.76755 0.90963 0.89756 0.88961 0.95062 0.98302 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.40 9.19 71.98 0.66 -3.74 16 2 C 0.08 2.63 2.14 29.85 0.06 2.70 16 3 H 0.12 3.78 6.32 -2.39 -0.02 3.76 16 4 O -0.33 -12.18 9.48 -50.36 -0.48 -12.66 16 5 C 0.52 16.44 6.66 70.24 0.47 16.90 16 6 O -0.49 -16.41 16.37 19.83 0.32 -16.09 16 7 C -0.18 -4.45 5.76 -20.03 -0.12 -4.56 16 8 C 0.16 2.68 7.29 22.67 0.17 2.84 16 9 F -0.12 -2.34 16.83 44.97 0.76 -1.59 16 10 C -0.10 -0.68 10.01 22.27 0.22 -0.46 16 11 C -0.04 -0.25 10.01 22.35 0.22 -0.03 16 12 C 0.06 0.95 7.29 22.37 0.16 1.11 16 13 F -0.12 -2.15 17.18 44.97 0.77 -1.38 16 14 C 0.11 2.62 7.30 22.72 0.17 2.79 16 15 F -0.13 -3.89 16.74 44.97 0.75 -3.13 16 16 C 0.50 22.73 6.95 87.66 0.61 23.34 16 17 O -0.58 -32.27 16.13 15.24 0.25 -32.03 16 18 N -0.60 -26.30 2.86 -851.14 -2.43 -28.73 16 19 C 0.06 1.99 9.79 127.77 1.25 3.24 16 20 C 0.26 14.18 5.18 85.64 0.44 14.62 16 21 C -0.55 -31.37 9.39 25.60 0.24 -31.13 16 22 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 23 C 0.01 0.44 5.46 84.65 0.46 0.91 16 24 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 25 Si 0.97 44.53 29.54 68.60 2.03 46.55 16 26 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 28 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 29 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.10 2.57 6.33 -2.39 -0.02 2.56 16 31 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.21 -0.48 8.06 -2.91 -0.02 -0.50 16 33 H 0.22 -0.72 8.06 -2.91 -0.02 -0.75 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.08 2.57 8.03 -2.39 -0.02 2.55 16 36 H 0.09 2.22 4.92 -2.39 -0.01 2.20 16 37 H 0.03 1.72 8.07 -2.39 -0.02 1.70 16 38 H 0.00 -0.07 7.36 -2.39 -0.02 -0.09 16 39 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -83.68 359.82 8.40 -75.28 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: 1.12 Total: 1.35 kcal Atomic # 6 Polarization: 23.50 SS G_CDS: 5.02 Total: 28.53 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -2.15 Total: -84.83 kcal Atomic # 8 Polarization: -60.87 SS G_CDS: 0.09 Total: -60.77 kcal Atomic # 9 Polarization: -8.38 SS G_CDS: 2.28 Total: -6.10 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -83.68 8.40 -75.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772730411.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.502 kcal (2) G-P(sol) polarization free energy of solvation -83.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds