Wall clock time and date at job start Wed Apr 1 2020 03:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.47034 * 2 1 4 4 C 1.46501 * 119.99840 * 270.00025 * 3 2 1 5 5 C 1.50696 * 109.47155 * 269.99733 * 4 3 2 6 6 H 1.08003 * 120.00128 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00063 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99760 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47287 * 90.00018 * 9 7 5 11 11 H 1.48500 * 109.46827 * 210.00385 * 9 7 5 12 12 H 1.48505 * 109.47161 * 329.99744 * 9 7 5 13 13 C 1.34771 * 119.99867 * 89.99895 * 3 2 1 14 14 O 1.21285 * 119.99959 * 180.02562 * 13 3 2 15 15 C 1.50695 * 120.00260 * 0.02562 * 13 3 2 16 16 O 1.45205 * 109.47702 * 180.02562 * 15 13 3 17 17 C 1.34741 * 117.00455 * 180.02562 * 16 15 13 18 18 O 1.21513 * 119.99820 * 359.97438 * 17 16 15 19 19 C 1.47411 * 120.00162 * 180.27225 * 17 16 15 20 20 C 1.39984 * 120.18482 * 89.44256 * 19 17 16 21 21 F 1.35106 * 120.07531 * 0.02562 * 20 19 17 22 22 C 1.38161 * 119.84606 * 179.76720 * 20 19 17 23 23 C 1.38338 * 120.21993 * 0.51708 * 22 20 19 24 24 C 1.38454 * 120.37021 * 359.73806 * 23 22 20 25 25 F 1.35103 * 119.92159 * 179.97438 * 24 23 22 26 26 C 1.38434 * 120.15250 * 359.97438 * 24 23 22 27 27 F 1.35094 * 120.11346 * 180.02562 * 26 24 23 28 28 H 1.08999 * 109.46842 * 299.99969 * 1 2 3 29 29 H 1.09000 * 109.47195 * 59.99778 * 1 2 3 30 30 H 1.08996 * 109.47077 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46842 * 240.00031 * 2 1 3 32 32 H 1.08996 * 109.46757 * 120.00066 * 2 1 3 33 33 H 1.08999 * 109.47410 * 30.00578 * 4 3 2 34 34 H 1.09008 * 109.46780 * 150.00292 * 4 3 2 35 35 H 0.97005 * 119.99879 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.47553 * 59.99845 * 15 13 3 37 37 H 1.09010 * 109.47374 * 299.99590 * 15 13 3 38 38 H 1.08001 * 119.88459 * 180.23253 * 22 20 19 39 39 H 1.07998 * 119.81743 * 179.72277 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3427 1.2303 -1.0962 7 6 4.1494 2.3906 -2.8775 8 7 5.3913 2.1835 -3.2573 9 14 3.0134 3.4371 -3.9280 10 1 3.1172 4.8571 -3.5059 11 1 3.4065 3.3149 -5.3549 12 1 1.6136 2.9713 -3.7587 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9924 1.3060 2.4722 16 8 2.3061 2.1958 3.5760 17 6 2.1353 1.7099 4.8211 18 8 1.7347 0.5738 4.9803 19 6 2.4283 2.5587 5.9901 20 6 1.4282 3.3698 6.5393 21 9 0.1898 3.3770 5.9993 22 6 1.7091 4.1590 7.6380 23 6 2.9776 4.1580 8.1899 24 6 3.9750 3.3633 7.6508 25 9 5.2108 3.3697 8.1968 26 6 3.7088 2.5621 6.5537 27 9 4.6824 1.7866 6.0286 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6878 -2.0284 34 1 2.0956 3.1411 -1.1384 35 1 5.7176 2.5746 -4.0829 36 1 2.6229 0.4187 2.5299 37 1 0.9444 1.0114 2.5303 38 1 0.9370 4.7822 8.0645 39 1 3.1913 4.7808 9.0460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772735957.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:16 Heat of formation + Delta-G solvation = -232.762286 kcal Electronic energy + Delta-G solvation = -29837.324054 eV Core-core repulsion = 24909.879742 eV Total energy + Delta-G solvation = -4927.444312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.87464 -50.39290 -49.90114 -42.06289 -40.78918 -39.67544 -37.88548 -37.09974 -34.91283 -33.05561 -32.07346 -31.36286 -30.80508 -28.88521 -26.24867 -24.54441 -24.27023 -24.14374 -22.72943 -20.43761 -19.97893 -19.49746 -19.33285 -19.15582 -18.71400 -18.09133 -17.83604 -17.77422 -17.52276 -17.18379 -16.87627 -16.81106 -16.35478 -16.28639 -15.87056 -15.71716 -15.64043 -15.11558 -14.82099 -14.58633 -14.34698 -14.19258 -14.15466 -13.81750 -13.61905 -13.44913 -13.21213 -13.14545 -13.07881 -12.60002 -12.46836 -12.28067 -12.17925 -12.05244 -11.90543 -11.76640 -10.90918 -10.84934 -10.57715 -9.97354 -9.59027 -8.35982 -6.42238 -0.79794 -0.55682 0.43747 0.89875 1.32402 1.36828 1.44949 1.47663 1.81856 2.10796 2.19822 2.29755 2.63698 2.97838 3.01681 3.09930 3.27990 3.35585 3.43267 3.73791 3.82010 3.95499 4.08137 4.28930 4.32621 4.48645 4.54776 4.62143 4.68409 4.74194 4.78339 4.85651 4.92922 4.96549 5.31350 5.33625 5.41990 5.50889 6.04696 6.19175 6.46156 6.59423 7.08443 7.24214 8.81034 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.002719 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.411389 B =10295.289369 C =10988.909013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.090 3.910 3 N -0.590 5.590 4 C 0.227 3.773 5 C -0.542 4.542 6 H 0.028 0.972 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.949 3.051 10 H -0.276 1.276 11 H -0.274 1.274 12 H -0.234 1.234 13 C 0.503 3.497 14 O -0.573 6.573 15 C 0.056 3.944 16 O -0.336 6.336 17 C 0.518 3.482 18 O -0.495 6.495 19 C -0.179 4.179 20 C 0.155 3.845 21 F -0.122 7.122 22 C -0.104 4.104 23 C -0.042 4.042 24 C 0.060 3.940 25 F -0.121 7.121 26 C 0.112 3.888 27 F -0.128 7.128 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.022 0.978 35 H 0.269 0.731 36 H 0.117 0.883 37 H 0.134 0.866 38 H 0.212 0.788 39 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.193 1.551 25.851 29.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.031 4.031 3 N -0.322 5.322 4 C 0.105 3.895 5 C -0.580 4.580 6 H 0.046 0.954 7 C -0.187 4.187 8 N -0.585 5.585 9 Si 0.771 3.229 10 H -0.202 1.202 11 H -0.200 1.200 12 H -0.157 1.157 13 C 0.290 3.710 14 O -0.452 6.452 15 C -0.020 4.020 16 O -0.251 6.251 17 C 0.360 3.640 18 O -0.382 6.382 19 C -0.182 4.182 20 C 0.135 3.865 21 F -0.100 7.100 22 C -0.122 4.122 23 C -0.060 4.060 24 C 0.040 3.960 25 F -0.100 7.100 26 C 0.091 3.909 27 F -0.107 7.107 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.135 0.865 37 H 0.151 0.849 38 H 0.229 0.771 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -12.952 1.761 25.665 28.802 hybrid contribution 0.755 -0.250 -1.356 1.572 sum -12.196 1.511 24.309 27.239 Atomic orbital electron populations 1.22186 0.93461 1.04045 1.02373 1.21932 0.96069 0.80634 1.04499 1.47964 1.63691 1.15378 1.05172 1.19403 0.95126 0.93204 0.81764 1.21553 0.97056 1.32455 1.06939 0.95360 1.25872 0.96771 0.97125 0.98915 1.70051 1.17494 1.46401 1.24513 0.85703 0.80531 0.78945 0.77712 1.20163 1.19956 1.15730 1.20380 0.78275 0.86681 0.85713 1.90687 1.46786 1.20071 1.87663 1.23030 1.05411 0.91952 0.81639 1.86706 1.78386 1.45416 1.14617 1.20955 0.74068 0.85649 0.83313 1.90874 1.41611 1.18937 1.86812 1.18916 0.95245 1.05802 0.98208 1.17580 0.78787 0.95696 0.94417 1.91602 1.38274 1.94859 1.85239 1.21565 0.99289 0.98485 0.92821 1.21693 0.89047 0.95101 1.00141 1.17643 0.83234 1.00928 0.94231 1.91591 1.38990 1.95350 1.84054 1.17504 0.84047 0.94239 0.95097 1.91574 1.60766 1.72565 1.85776 0.92263 0.92667 0.88418 0.89779 0.88981 0.92347 0.95995 0.92181 0.86478 0.84861 0.77112 0.76789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 10.24 71.98 0.74 -2.79 16 2 C 0.09 2.62 5.93 86.38 0.51 3.14 16 3 N -0.59 -24.07 2.46 -826.16 -2.03 -26.10 16 4 C 0.23 11.00 4.23 85.63 0.36 11.36 16 5 C -0.54 -32.07 9.94 25.60 0.25 -31.82 16 6 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 7 C 0.01 0.67 5.47 84.66 0.46 1.14 16 8 N -0.94 -60.18 13.96 21.45 0.30 -59.88 16 9 Si 0.95 44.27 27.47 68.60 1.88 46.15 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.23 -9.67 6.54 99.48 0.65 -9.02 16 13 C 0.50 21.39 7.75 87.66 0.68 22.07 16 14 O -0.57 -30.25 16.08 15.75 0.25 -29.99 16 15 C 0.06 1.82 4.51 71.23 0.32 2.14 16 16 O -0.34 -11.96 9.77 -50.12 -0.49 -12.45 16 17 C 0.52 16.11 6.68 70.24 0.47 16.58 16 18 O -0.49 -16.15 16.90 19.79 0.33 -15.82 16 19 C -0.18 -4.37 5.76 -20.03 -0.12 -4.49 16 20 C 0.16 2.67 7.29 22.67 0.17 2.84 16 21 F -0.12 -2.41 16.83 44.97 0.76 -1.66 16 22 C -0.10 -0.69 10.01 22.28 0.22 -0.47 16 23 C -0.04 -0.25 10.01 22.35 0.22 -0.02 16 24 C 0.06 0.93 7.29 22.37 0.16 1.10 16 25 F -0.12 -2.13 17.18 44.97 0.77 -1.36 16 26 C 0.11 2.60 7.30 22.72 0.17 2.77 16 27 F -0.13 -3.73 16.74 44.97 0.75 -2.98 16 28 H 0.06 1.21 7.22 -2.39 -0.02 1.19 16 29 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 30 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 2.57 8.07 -2.39 -0.02 2.55 16 32 H 0.09 2.22 6.44 -2.39 -0.02 2.20 16 33 H 0.06 2.55 7.13 -2.39 -0.02 2.53 16 34 H 0.02 1.14 6.85 -2.38 -0.02 1.12 16 35 H 0.27 15.89 8.31 -92.70 -0.77 15.12 16 36 H 0.12 3.42 7.40 -2.39 -0.02 3.41 16 37 H 0.13 3.40 7.18 -2.38 -0.02 3.38 16 38 H 0.21 -0.43 8.06 -2.91 -0.02 -0.46 16 39 H 0.22 -0.71 8.06 -2.91 -0.02 -0.74 16 Total: -1.00 -86.66 359.59 8.22 -78.43 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: 1.07 Total: 2.10 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: 4.62 Total: 23.54 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -1.73 Total: -85.97 kcal Atomic # 8 Polarization: -58.36 SS G_CDS: 0.10 Total: -58.26 kcal Atomic # 9 Polarization: -8.27 SS G_CDS: 2.28 Total: -5.99 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.15 kcal Total: -86.66 8.22 -78.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772735957.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.331 kcal (2) G-P(sol) polarization free energy of solvation -86.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds