Wall clock time and date at job start Wed Apr 1 2020 04:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48505 * 109.47160 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47100 * 120.00151 * 3 2 1 6 6 H 1.48502 * 109.47051 * 240.00225 * 3 2 1 7 7 C 1.39937 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00316 * 154.60639 * 7 2 1 9 9 C 1.41401 * 120.00394 * 334.60180 * 7 2 1 10 10 C 1.40739 * 120.23840 * 334.56896 * 9 7 2 11 11 C 1.37593 * 119.74077 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25264 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50051 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24281 * 359.66907 * 13 12 11 15 15 C 1.50707 * 120.12639 * 180.31829 * 14 13 12 16 16 C 1.50694 * 109.47262 * 265.30991 * 15 14 13 17 17 O 1.21282 * 120.00405 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00092 * 179.97438 * 16 15 14 19 19 N 1.40108 * 120.00399 * 179.97438 * 18 16 15 20 20 C 1.34770 * 120.00003 * 180.02562 * 19 18 16 21 21 O 1.21593 * 119.99643 * 180.02562 * 20 19 18 22 22 N 1.34772 * 120.00330 * 0.02562 * 20 19 18 23 23 C 1.46498 * 120.00074 * 179.97438 * 22 20 19 24 24 C 1.53003 * 109.47183 * 179.97438 * 23 22 20 25 25 F 1.39906 * 109.46806 * 60.00328 * 24 23 22 26 26 F 1.39904 * 109.47149 * 179.97438 * 24 23 22 27 27 F 1.39896 * 109.47257 * 300.00383 * 24 23 22 28 28 H 0.96998 * 119.99709 * 174.17561 * 1 2 3 29 29 H 1.07996 * 120.12982 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.87342 * 180.02562 * 11 10 9 31 31 H 1.07996 * 119.75200 * 179.97438 * 12 11 10 32 32 H 1.07998 * 119.87807 * 179.97438 * 13 12 11 33 33 H 1.09001 * 109.47002 * 25.30721 * 15 14 13 34 34 H 1.08991 * 109.47139 * 145.30684 * 15 14 13 35 35 H 0.97000 * 120.00029 * 0.02562 * 18 16 15 36 36 H 0.97000 * 119.99572 * 0.02562 * 19 18 16 37 37 H 0.96999 * 119.99737 * 0.02562 * 22 20 19 38 38 H 1.09001 * 109.47594 * 300.00152 * 23 22 20 39 39 H 1.09000 * 109.47148 * 59.99765 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0960 1.6965 1.2124 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0097 -1.2569 -0.4016 9 6 1.4036 -2.3776 0.5241 10 6 0.3896 -2.2747 1.4946 11 6 -0.1912 -3.4157 1.9986 12 6 0.2195 -4.6634 1.5543 13 6 1.2180 -4.7766 0.5996 14 6 1.8086 -3.6485 0.0769 15 6 2.8891 -3.7745 -0.9661 16 6 4.2391 -3.7413 -0.2975 17 8 4.3165 -3.6271 0.9074 18 7 5.3607 -3.8395 -1.0384 19 7 6.6159 -3.8081 -0.4169 20 6 7.7374 -3.9058 -1.1579 21 8 8.8268 -3.8791 -0.6184 22 7 7.6515 -4.0333 -2.4968 23 6 8.8706 -4.1389 -3.3023 24 6 8.4957 -4.2738 -4.7796 25 9 7.7679 -3.1482 -5.1806 26 9 9.6600 -4.3741 -5.5488 27 9 7.7165 -5.4215 -4.9601 28 1 -0.4849 -0.8357 -0.0852 29 1 0.0691 -1.3040 1.8430 30 1 -0.9698 -3.3393 2.7431 31 1 -0.2416 -5.5537 1.9556 32 1 1.5304 -5.7534 0.2610 33 1 2.7709 -4.7177 -1.4995 34 1 2.8121 -2.9465 -1.6708 35 1 5.2988 -3.9312 -2.0021 36 1 6.6778 -3.7160 0.5468 37 1 6.7824 -4.0543 -2.9272 38 1 9.4779 -3.2449 -3.1614 39 1 9.4374 -5.0160 -2.9901 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776972055.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:05 Heat of formation + Delta-G solvation = -168.379701 kcal Electronic energy + Delta-G solvation = -29663.656533 eV Core-core repulsion = 24771.296810 eV Total energy + Delta-G solvation = -4892.359723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.65277 -48.16747 -48.12250 -40.69369 -39.29539 -37.68218 -35.67009 -35.47454 -33.92866 -32.26858 -30.86541 -29.46921 -29.28808 -26.80625 -24.97338 -24.00875 -21.83003 -21.48798 -21.01926 -20.27081 -19.46858 -19.12063 -18.88400 -18.01944 -17.79224 -17.24897 -16.17693 -15.92693 -15.66970 -15.27437 -15.10767 -14.97966 -14.92611 -14.62977 -14.54900 -14.27237 -14.27146 -14.22443 -14.15683 -13.83286 -13.54325 -13.50547 -12.43988 -12.42386 -12.11629 -11.87477 -11.64427 -11.29217 -11.12463 -10.95637 -10.90685 -10.53866 -10.43394 -9.92264 -9.75655 -9.66971 -9.45725 -9.02730 -8.36079 -7.64999 -7.59094 -7.19947 -4.50887 1.67492 2.04241 2.36823 2.59535 2.74630 2.80491 3.02099 3.12518 3.14262 3.24566 3.33836 3.47828 3.67380 3.97279 4.47554 4.56303 4.62181 4.79028 5.07823 5.49233 5.54130 5.70362 5.79702 6.08390 6.15030 6.19527 6.27465 6.40326 6.60205 6.92391 7.12190 7.25680 7.34157 7.46148 7.62568 7.74937 7.76666 7.88180 8.02208 8.12518 8.26159 8.51910 8.69172 8.84462 10.00531 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.011956 B = 0.002823 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.324193 B = 9917.389338 C =10858.874584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.041 3.959 3 Si 1.059 2.941 4 H -0.273 1.273 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.072 0.928 9 C 0.117 3.883 10 C -0.215 4.215 11 C -0.083 4.083 12 C -0.253 4.253 13 C -0.064 4.064 14 C -0.193 4.193 15 C -0.057 4.057 16 C 0.517 3.483 17 O -0.508 6.508 18 N -0.548 5.548 19 N -0.523 5.523 20 C 0.721 3.279 21 O -0.574 6.574 22 N -0.746 5.746 23 C 0.098 3.902 24 C 0.448 3.552 25 F -0.176 7.176 26 F -0.172 7.172 27 F -0.177 7.177 28 H 0.300 0.700 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.413 0.587 36 H 0.447 0.553 37 H 0.401 0.599 38 H 0.118 0.882 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.153 -6.753 -11.319 18.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.181 4.181 3 Si 0.883 3.117 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.545 4.545 8 H 0.090 0.910 9 C 0.114 3.886 10 C -0.234 4.234 11 C -0.102 4.102 12 C -0.272 4.272 13 C -0.083 4.083 14 C -0.195 4.195 15 C -0.099 4.099 16 C 0.305 3.695 17 O -0.378 6.378 18 N -0.304 5.304 19 N -0.277 5.277 20 C 0.420 3.580 21 O -0.449 6.449 22 N -0.407 5.407 23 C -0.028 4.028 24 C 0.393 3.607 25 F -0.157 7.157 26 F -0.153 7.153 27 F -0.159 7.159 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.254 0.746 36 H 0.293 0.707 37 H 0.237 0.763 38 H 0.136 0.864 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 13.761 -5.009 -10.129 17.806 hybrid contribution -0.288 -1.763 -0.591 1.882 sum 13.473 -6.772 -10.721 18.502 Atomic orbital electron populations 1.70460 1.08204 1.34346 1.28785 1.26927 0.95646 1.04183 0.91332 0.83716 0.75774 0.74172 0.78050 1.19800 1.20002 1.20206 1.20451 1.02675 0.94057 1.37277 0.90961 1.17386 0.90211 0.91742 0.89215 1.21160 1.03435 0.97060 1.01742 1.20634 0.98160 0.93228 0.98180 1.20280 1.04941 0.95874 1.06154 1.20370 0.95945 0.95788 0.96180 1.18891 1.02973 0.93663 1.03988 1.20206 0.87755 1.03254 0.98635 1.21842 0.84301 0.75063 0.88272 1.90738 1.86229 1.46519 1.14293 1.45541 0.96095 1.79732 1.09007 1.44385 0.94830 1.78505 1.09962 1.15389 0.83479 0.78345 0.80766 1.91050 1.24000 1.59062 1.70767 1.44647 1.08753 1.81377 1.05947 1.22312 0.88883 1.08103 0.83531 1.20541 0.75178 0.74176 0.90799 1.93257 1.78208 1.51908 1.92355 1.93236 1.48518 1.95888 1.77686 1.93242 1.75589 1.50723 1.96314 0.88645 0.87676 0.89278 0.89332 0.89438 0.89783 0.87904 0.74614 0.70655 0.76320 0.86445 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.27 12.32 55.55 0.68 -19.58 16 2 C 0.04 1.01 4.94 -17.34 -0.09 0.92 16 3 Si 1.06 21.19 30.00 -169.99 -5.10 16.09 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 6 H -0.28 -5.19 7.11 56.52 0.40 -4.78 16 7 C -0.52 -12.84 8.08 -37.74 -0.30 -13.14 16 8 H 0.07 1.74 6.73 -52.49 -0.35 1.39 16 9 C 0.12 2.93 5.30 -106.82 -0.57 2.37 16 10 C -0.21 -5.40 7.95 -38.87 -0.31 -5.71 16 11 C -0.08 -1.92 10.02 -39.66 -0.40 -2.32 16 12 C -0.25 -5.53 10.05 -39.29 -0.39 -5.92 16 13 C -0.06 -1.37 9.66 -39.66 -0.38 -1.76 16 14 C -0.19 -4.25 4.43 -103.91 -0.46 -4.71 16 15 C -0.06 -0.97 5.18 -29.03 -0.15 -1.12 16 16 C 0.52 8.78 7.58 -10.99 -0.08 8.70 16 17 O -0.51 -10.99 15.87 5.56 0.09 -10.90 16 18 N -0.55 -6.77 6.26 31.22 0.20 -6.57 16 19 N -0.52 -6.74 6.26 27.63 0.17 -6.57 16 20 C 0.72 8.68 8.68 -86.93 -0.75 7.92 16 21 O -0.57 -8.63 17.18 5.28 0.09 -8.54 16 22 N -0.75 -6.24 5.38 -65.23 -0.35 -6.59 16 23 C 0.10 0.64 5.64 -4.04 -0.02 0.62 16 24 C 0.45 2.94 3.11 37.16 0.12 3.06 16 25 F -0.18 -1.36 17.18 2.25 0.04 -1.32 16 26 F -0.17 -1.21 17.32 2.25 0.04 -1.17 16 27 F -0.18 -1.29 17.18 2.25 0.04 -1.26 16 28 H 0.30 7.80 6.68 -40.82 -0.27 7.53 16 29 H 0.11 2.74 6.49 -52.49 -0.34 2.40 16 30 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 31 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 32 H 0.09 1.61 8.06 -52.49 -0.42 1.18 16 33 H 0.08 1.11 8.05 -51.93 -0.42 0.69 16 34 H 0.10 1.68 7.06 -51.93 -0.37 1.32 16 35 H 0.41 3.53 6.70 -182.59 -1.22 2.31 16 36 H 0.45 6.36 8.10 -182.59 -1.48 4.88 16 37 H 0.40 2.69 6.28 -40.82 -0.26 2.44 16 38 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 353.43 15.07 5.33 5.33 Total: -1.00 -31.55 353.43 -8.19 -39.74 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -5.62 Total: 12.44 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -3.80 Total: -11.10 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.70 Total: -39.31 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.18 Total: -19.44 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.12 Total: -3.74 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.10 Total: 16.09 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.55 -8.19 -39.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776972055.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.641 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds