Wall clock time and date at job start Wed Apr 1 2020 04:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48505 * 109.47160 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47100 * 120.00151 * 3 2 1 6 6 H 1.48502 * 109.47051 * 240.00225 * 3 2 1 7 7 C 1.39937 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00316 * 154.60639 * 7 2 1 9 9 C 1.41401 * 120.00394 * 334.60180 * 7 2 1 10 10 C 1.40739 * 120.23840 * 334.56896 * 9 7 2 11 11 C 1.37593 * 119.74077 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25264 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50051 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24281 * 359.66907 * 13 12 11 15 15 C 1.50707 * 120.12639 * 180.31829 * 14 13 12 16 16 C 1.50694 * 109.47262 * 265.30991 * 15 14 13 17 17 O 1.21282 * 120.00405 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00092 * 179.97438 * 16 15 14 19 19 N 1.40108 * 120.00399 * 179.97438 * 18 16 15 20 20 C 1.34770 * 120.00003 * 180.02562 * 19 18 16 21 21 O 1.21593 * 119.99643 * 180.02562 * 20 19 18 22 22 N 1.34772 * 120.00330 * 0.02562 * 20 19 18 23 23 C 1.46498 * 120.00074 * 179.97438 * 22 20 19 24 24 C 1.53003 * 109.47183 * 179.97438 * 23 22 20 25 25 F 1.39906 * 109.46806 * 60.00328 * 24 23 22 26 26 F 1.39904 * 109.47149 * 179.97438 * 24 23 22 27 27 F 1.39896 * 109.47257 * 300.00383 * 24 23 22 28 28 H 0.96998 * 119.99709 * 174.17561 * 1 2 3 29 29 H 1.07996 * 120.12982 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.87342 * 180.02562 * 11 10 9 31 31 H 1.07996 * 119.75200 * 179.97438 * 12 11 10 32 32 H 1.07998 * 119.87807 * 179.97438 * 13 12 11 33 33 H 1.09001 * 109.47002 * 25.30721 * 15 14 13 34 34 H 1.08991 * 109.47139 * 145.30684 * 15 14 13 35 35 H 0.97000 * 120.00029 * 0.02562 * 18 16 15 36 36 H 0.97000 * 119.99572 * 0.02562 * 19 18 16 37 37 H 0.96999 * 119.99737 * 0.02562 * 22 20 19 38 38 H 1.09001 * 109.47594 * 300.00152 * 23 22 20 39 39 H 1.09000 * 109.47148 * 59.99765 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0960 1.6965 1.2124 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0097 -1.2569 -0.4016 9 6 1.4036 -2.3776 0.5241 10 6 0.3896 -2.2747 1.4946 11 6 -0.1912 -3.4157 1.9986 12 6 0.2195 -4.6634 1.5543 13 6 1.2180 -4.7766 0.5996 14 6 1.8086 -3.6485 0.0769 15 6 2.8891 -3.7745 -0.9661 16 6 4.2391 -3.7413 -0.2975 17 8 4.3165 -3.6271 0.9074 18 7 5.3607 -3.8395 -1.0384 19 7 6.6159 -3.8081 -0.4169 20 6 7.7374 -3.9058 -1.1579 21 8 8.8268 -3.8791 -0.6184 22 7 7.6515 -4.0333 -2.4968 23 6 8.8706 -4.1389 -3.3023 24 6 8.4957 -4.2738 -4.7796 25 9 7.7679 -3.1482 -5.1806 26 9 9.6600 -4.3741 -5.5488 27 9 7.7165 -5.4215 -4.9601 28 1 -0.4849 -0.8357 -0.0852 29 1 0.0691 -1.3040 1.8430 30 1 -0.9698 -3.3393 2.7431 31 1 -0.2416 -5.5537 1.9556 32 1 1.5304 -5.7534 0.2610 33 1 2.7709 -4.7177 -1.4995 34 1 2.8121 -2.9465 -1.6708 35 1 5.2988 -3.9312 -2.0021 36 1 6.6778 -3.7160 0.5468 37 1 6.7824 -4.0543 -2.9272 38 1 9.4779 -3.2449 -3.1614 39 1 9.4374 -5.0160 -2.9901 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776972055.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:04 Heat of formation + Delta-G solvation = -189.683525 kcal Electronic energy + Delta-G solvation = -29664.580336 eV Core-core repulsion = 24771.296810 eV Total energy + Delta-G solvation = -4893.283526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -51.20702 -48.71874 -48.68638 -41.74312 -40.61482 -39.31985 -36.86001 -36.28555 -35.71922 -33.76938 -32.09955 -31.07808 -30.19243 -28.32770 -26.75006 -24.61962 -23.05859 -22.80092 -22.51294 -21.57403 -20.63959 -19.67074 -19.57357 -19.48789 -18.92719 -18.23555 -17.14767 -16.96139 -16.86431 -16.57863 -16.53710 -15.99525 -15.75092 -15.68801 -15.56584 -15.32973 -15.25317 -15.10655 -14.90455 -14.82717 -14.81013 -14.41118 -14.19511 -13.84659 -13.54721 -13.00379 -12.98397 -12.92857 -12.60746 -12.43836 -12.23308 -12.00929 -11.98465 -11.47225 -11.20223 -11.09254 -10.81861 -10.69947 -9.45878 -9.42522 -9.41166 -9.03661 -6.37779 0.59931 1.00507 1.03316 1.37517 1.47360 1.49577 1.63733 1.71802 1.77164 1.86857 2.32278 2.61057 2.73350 2.94616 3.09846 3.39249 3.71157 3.99677 4.12015 4.24833 4.31199 4.34059 4.51098 4.60204 4.74476 4.80468 4.98739 5.10513 5.24825 5.33162 5.35125 5.52741 5.81869 5.87140 6.00568 6.08448 6.21668 6.31289 6.45563 6.48871 6.87110 7.02277 7.05173 7.34215 8.11643 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.011956 B = 0.002823 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.324193 B = 9917.389338 C =10858.874584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.007 3.993 3 Si 1.104 2.896 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.251 1.251 7 C -0.540 4.540 8 H 0.074 0.926 9 C 0.088 3.912 10 C -0.247 4.247 11 C -0.096 4.096 12 C -0.253 4.253 13 C -0.075 4.075 14 C -0.192 4.192 15 C -0.058 4.058 16 C 0.523 3.477 17 O -0.561 6.561 18 N -0.523 5.523 19 N -0.529 5.529 20 C 0.726 3.274 21 O -0.603 6.603 22 N -0.734 5.734 23 C 0.096 3.904 24 C 0.457 3.543 25 F -0.182 7.182 26 F -0.173 7.173 27 F -0.180 7.180 28 H 0.285 0.715 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.109 0.891 35 H 0.434 0.566 36 H 0.440 0.560 37 H 0.410 0.590 38 H 0.126 0.874 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.559 -8.145 -13.064 21.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.210 4.210 3 Si 0.922 3.078 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.175 1.175 7 C -0.568 4.568 8 H 0.093 0.907 9 C 0.085 3.915 10 C -0.266 4.266 11 C -0.115 4.115 12 C -0.272 4.272 13 C -0.093 4.093 14 C -0.194 4.194 15 C -0.099 4.099 16 C 0.311 3.689 17 O -0.436 6.436 18 N -0.278 5.278 19 N -0.282 5.282 20 C 0.425 3.575 21 O -0.479 6.479 22 N -0.394 5.394 23 C -0.029 4.029 24 C 0.402 3.598 25 F -0.163 7.163 26 F -0.154 7.154 27 F -0.161 7.161 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.124 0.876 31 H 0.135 0.865 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.127 0.873 35 H 0.279 0.721 36 H 0.285 0.715 37 H 0.248 0.752 38 H 0.144 0.856 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.178 -6.429 -11.981 20.377 hybrid contribution -0.692 -1.521 -0.068 1.672 sum 14.486 -7.950 -12.048 20.450 Atomic orbital electron populations 1.70552 1.08971 1.33357 1.31527 1.28102 0.95680 1.07059 0.90146 0.83159 0.74934 0.70841 0.78823 1.19792 1.20315 1.17526 1.20572 1.02859 0.94745 1.38630 0.90743 1.17773 0.90666 0.93417 0.89628 1.21159 1.05260 0.96851 1.03373 1.20901 0.98615 0.93322 0.98639 1.20724 1.04615 0.96208 1.05659 1.20849 0.95431 0.97297 0.95735 1.19413 1.03335 0.92711 1.03931 1.20253 0.86255 1.05981 0.97371 1.21627 0.85237 0.74529 0.87522 1.90731 1.87015 1.49315 1.16515 1.45052 0.95329 1.77803 1.09648 1.44444 0.94900 1.78889 1.09923 1.15386 0.82598 0.77976 0.81553 1.91035 1.24915 1.60355 1.71633 1.44529 1.10035 1.80081 1.04748 1.22476 0.88166 1.09216 0.83061 1.20427 0.74915 0.73826 0.90605 1.93251 1.78364 1.52251 1.92437 1.93238 1.48615 1.95875 1.77707 1.93240 1.75676 1.50878 1.96334 0.90229 0.90098 0.87640 0.86520 0.85740 0.85188 0.87294 0.72138 0.71483 0.75221 0.85580 0.85282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.49 12.32 21.82 0.27 -43.22 16 2 C 0.01 0.34 4.94 85.25 0.42 0.76 16 3 Si 1.10 43.10 30.00 68.60 2.06 45.16 16 4 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 5 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 7 C -0.54 -27.30 8.08 23.46 0.19 -27.11 16 8 H 0.07 3.60 6.73 -2.91 -0.02 3.58 16 9 C 0.09 4.46 5.30 -21.29 -0.11 4.35 16 10 C -0.25 -12.89 7.95 22.73 0.18 -12.71 16 11 C -0.10 -4.46 10.02 22.22 0.22 -4.24 16 12 C -0.25 -10.62 10.05 22.46 0.23 -10.39 16 13 C -0.08 -3.02 9.66 22.22 0.21 -2.80 16 14 C -0.19 -8.22 4.43 -19.40 -0.09 -8.31 16 15 C -0.06 -1.80 5.18 29.10 0.15 -1.65 16 16 C 0.52 16.74 7.58 87.66 0.66 17.40 16 17 O -0.56 -23.99 15.87 -3.04 -0.05 -24.04 16 18 N -0.52 -11.58 6.26 -173.54 -1.09 -12.66 16 19 N -0.53 -12.74 6.26 -184.75 -1.16 -13.89 16 20 C 0.73 16.01 8.68 179.06 1.55 17.57 16 21 O -0.60 -17.24 17.18 -4.01 -0.07 -17.31 16 22 N -0.73 -10.29 5.38 -478.54 -2.57 -12.86 16 23 C 0.10 1.01 5.64 86.38 0.49 1.50 16 24 C 0.46 4.88 3.11 71.98 0.22 5.10 16 25 F -0.18 -2.36 17.18 44.97 0.77 -1.59 16 26 F -0.17 -2.06 17.32 44.97 0.78 -1.28 16 27 F -0.18 -2.16 17.18 44.97 0.77 -1.38 16 28 H 0.29 15.65 6.68 -92.71 -0.62 15.03 16 29 H 0.08 4.49 6.49 -2.91 -0.02 4.48 16 30 H 0.11 4.36 8.06 -2.91 -0.02 4.33 16 31 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 32 H 0.12 4.04 8.06 -2.91 -0.02 4.01 16 33 H 0.13 2.82 8.05 -2.39 -0.02 2.80 16 34 H 0.11 3.31 7.06 -2.39 -0.02 3.30 16 35 H 0.43 5.89 6.70 -213.32 -1.43 4.46 16 36 H 0.44 12.22 8.10 -213.32 -1.73 10.50 16 37 H 0.41 4.18 6.28 -92.71 -0.58 3.60 16 38 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -70.75 353.43 1.63 -69.12 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: -2.42 Total: 34.51 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: 4.34 Total: -20.55 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -4.55 Total: -82.63 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -0.12 Total: -41.35 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 2.32 Total: -4.25 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.06 Total: 45.16 kcal Total: -70.75 1.63 -69.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776972055.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.566 kcal (2) G-P(sol) polarization free energy of solvation -70.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds