Wall clock time and date at job start Wed Apr 1 2020 03:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46670 * 2 1 4 4 O 1.45197 * 109.47339 * 120.00165 * 2 1 3 5 5 C 1.34749 * 116.99899 * 270.00152 * 4 2 1 6 6 O 1.21509 * 119.99993 * 359.97438 * 5 4 2 7 7 C 1.47432 * 119.99685 * 180.02562 * 5 4 2 8 8 C 1.39811 * 120.14029 * 0.02562 * 7 5 4 9 9 C 1.37893 * 119.87263 * 180.02562 * 8 7 5 10 10 F 1.35108 * 119.92721 * 179.97438 * 9 8 7 11 11 C 1.38966 * 120.15368 * 0.02562 * 9 8 7 12 12 F 1.35102 * 119.86217 * 179.97438 * 11 9 8 13 13 C 1.38457 * 120.27604 * 359.97438 * 11 9 8 14 14 C 1.38198 * 120.12658 * 359.76571 * 13 11 9 15 15 F 1.35095 * 120.08110 * 180.27922 * 14 13 11 16 16 C 1.50702 * 109.47230 * 240.00733 * 2 1 3 17 17 O 1.21283 * 119.99478 * 244.99823 * 16 2 1 18 18 N 1.34773 * 120.00430 * 64.99170 * 16 2 1 19 19 C 1.46506 * 119.99969 * 0.02562 * 18 16 2 20 20 C 1.46499 * 120.00036 * 179.72648 * 18 16 2 21 21 C 1.50703 * 109.47126 * 270.27831 * 20 18 16 22 22 H 1.08002 * 119.99820 * 359.97438 * 21 20 18 23 23 C 1.37876 * 119.99889 * 180.02562 * 21 20 18 24 24 N 1.31518 * 120.00192 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00045 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46980 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47015 * 119.99649 * 25 23 21 28 28 H 1.48496 * 109.47036 * 240.00093 * 25 23 21 29 29 H 1.09002 * 109.46624 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46972 * 299.99294 * 1 2 3 31 31 H 1.09005 * 109.47553 * 60.00228 * 1 2 3 32 32 H 1.07996 * 120.06748 * 0.02829 * 8 7 5 33 33 H 1.07997 * 119.93650 * 180.02562 * 13 11 9 34 34 H 1.08999 * 109.46892 * 269.72362 * 19 18 16 35 35 H 1.09000 * 109.46803 * 29.71536 * 19 18 16 36 36 H 1.09000 * 109.47214 * 149.72329 * 19 18 16 37 37 H 1.08994 * 109.47173 * 30.28203 * 20 18 16 38 38 H 1.09005 * 109.47077 * 150.28374 * 20 18 16 39 39 H 0.96995 * 119.99689 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2179 0.0669 2.2853 6 8 1.9977 1.2615 2.2544 7 6 2.7093 -0.5603 3.5258 8 6 2.9651 -1.9343 3.5641 9 6 3.4241 -2.5153 4.7274 10 9 3.6712 -3.8430 4.7658 11 6 3.6320 -1.7385 5.8608 12 9 4.0813 -2.3139 6.9975 13 6 3.3807 -0.3772 5.8298 14 6 2.9256 0.2179 4.6685 15 9 2.6861 1.5470 4.6377 16 6 2.0324 -0.7103 -1.2306 17 8 2.6530 -1.7465 -1.1216 18 7 1.7918 -0.1940 -2.4521 19 6 1.0425 1.0580 -2.5836 20 6 2.2854 -0.8814 -3.6479 21 6 3.6681 -0.3821 -3.9797 22 1 4.1325 0.3722 -3.3618 23 6 4.3397 -0.8874 -5.0726 24 7 3.7739 -1.8055 -5.8254 25 14 6.0533 -0.2679 -5.4843 26 1 6.4616 0.7563 -4.4897 27 1 7.0114 -1.4018 -5.4482 28 1 6.0492 0.3337 -6.8419 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.8037 -2.5395 2.6843 33 1 3.5446 0.2213 6.7137 34 1 -0.0212 0.8370 -2.6727 35 1 1.2123 1.6773 -1.7029 36 1 1.3786 1.5909 -3.4731 37 1 2.3218 -1.9546 -3.4611 38 1 1.6162 -0.6807 -4.4846 39 1 4.2463 -2.1607 -6.5945 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785595902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:45 Heat of formation + Delta-G solvation = -212.731118 kcal Electronic energy + Delta-G solvation = -29793.443548 eV Core-core repulsion = 24866.867852 eV Total energy + Delta-G solvation = -4926.575695 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.07063 -49.51514 -49.09921 -40.92389 -39.35260 -38.62079 -36.52796 -34.99254 -33.01060 -32.29165 -31.36687 -30.69488 -27.76505 -26.26632 -25.44994 -24.42169 -23.81193 -22.58061 -21.28907 -19.15142 -18.96483 -18.71054 -18.12960 -17.39783 -17.09206 -16.84496 -16.57590 -16.34800 -16.15823 -15.80355 -15.69170 -15.48062 -15.23980 -15.08686 -14.84658 -14.65060 -14.35870 -13.97912 -13.65108 -13.30111 -12.98626 -12.92935 -12.47290 -12.34153 -12.31421 -12.21547 -12.13280 -11.75561 -11.52300 -11.25100 -10.95409 -10.86542 -10.82275 -10.63510 -10.21141 -9.89471 -9.67942 -9.27287 -8.99932 -8.49043 -7.79383 -6.10014 -4.15095 -0.30935 0.19642 1.86420 2.11861 2.77217 2.94069 3.17693 3.27172 3.29777 3.35188 3.39411 3.66784 3.68090 3.79947 4.13785 4.37746 4.41134 4.70409 4.80052 4.85908 4.93338 4.99547 5.04204 5.18453 5.24902 5.30560 5.45502 5.57427 5.58034 5.79186 5.91669 5.94882 6.16253 6.17525 6.91590 7.33165 7.37932 7.45349 7.85892 8.15145 8.21887 8.77908 8.93379 9.50328 10.98168 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.002663 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.102284 B =10511.012911 C =11313.698349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 H 0.109 0.891 4 O -0.318 6.318 5 C 0.510 3.490 6 O -0.487 6.487 7 C -0.141 4.141 8 C -0.034 4.034 9 C 0.049 3.951 10 F -0.116 7.116 11 C 0.135 3.865 12 F -0.112 7.112 13 C -0.179 4.179 14 C 0.189 3.811 15 F -0.099 7.099 16 C 0.509 3.491 17 O -0.519 6.519 18 N -0.594 5.594 19 C 0.075 3.925 20 C 0.246 3.754 21 C -0.529 4.529 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.282 1.282 28 H -0.283 1.283 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.179 0.821 33 H 0.170 0.830 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.293 3.882 22.499 23.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 H 0.127 0.873 4 O -0.233 6.233 5 C 0.353 3.647 6 O -0.376 6.376 7 C -0.144 4.144 8 C -0.053 4.053 9 C 0.029 3.971 10 F -0.094 7.094 11 C 0.114 3.886 12 F -0.090 7.090 13 C -0.199 4.199 14 C 0.169 3.831 15 F -0.076 7.076 16 C 0.293 3.707 17 O -0.395 6.395 18 N -0.328 5.328 19 C -0.069 4.069 20 C 0.128 3.872 21 C -0.568 4.568 22 H 0.077 0.923 23 C -0.140 4.140 24 N -0.532 5.532 25 Si 0.726 3.274 26 H -0.198 1.198 27 H -0.208 1.208 28 H -0.209 1.209 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.196 0.804 33 H 0.188 0.812 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.993 3.540 22.355 23.413 hybrid contribution 1.054 0.404 -0.139 1.137 sum -4.939 3.944 22.216 23.097 Atomic orbital electron populations 1.22299 0.92065 1.04216 1.04247 1.22736 0.95911 0.97750 0.82283 0.87334 1.86622 1.76579 1.40775 1.19310 1.20503 0.75243 0.85114 0.83831 1.90913 1.47413 1.15142 1.84090 1.19009 1.09353 0.93707 0.92281 1.21444 0.92433 0.93592 0.97815 1.17429 1.06473 0.79235 0.93970 1.91612 1.91995 1.29015 1.96770 1.17521 0.98148 0.90736 0.82163 1.91607 1.85781 1.84366 1.47248 1.20869 1.05889 0.93368 0.99737 1.17182 0.95472 0.78482 0.92005 1.91670 1.90604 1.28749 1.96615 1.19704 0.81246 0.85973 0.83783 1.90709 1.39664 1.23385 1.85730 1.48074 1.53831 1.23992 1.06864 1.21866 0.95415 0.86694 1.02908 1.19374 0.94301 0.93863 0.79688 1.21457 1.00889 1.23153 1.11319 0.92348 1.24933 0.98254 0.94856 0.95992 1.69936 1.38039 1.28154 1.17112 0.86430 0.84096 0.78779 0.78065 1.19781 1.20799 1.20896 0.90796 0.91168 0.89060 0.80360 0.81235 0.93017 0.92304 0.90209 0.93585 0.94521 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 9.27 37.16 0.34 -1.71 16 2 C 0.07 1.12 2.17 -27.88 -0.06 1.05 16 3 H 0.11 1.63 6.15 -51.93 -0.32 1.31 16 4 O -0.32 -4.92 8.67 -47.29 -0.41 -5.33 16 5 C 0.51 7.07 7.86 34.47 0.27 7.34 16 6 O -0.49 -7.51 14.59 -19.27 -0.28 -7.79 16 7 C -0.14 -1.54 5.88 -104.93 -0.62 -2.16 16 8 C -0.03 -0.33 9.59 -39.12 -0.37 -0.70 16 9 C 0.05 0.45 7.29 -39.44 -0.29 0.17 16 10 F -0.12 -1.19 17.17 2.25 0.04 -1.15 16 11 C 0.14 1.09 7.31 -39.23 -0.29 0.80 16 12 F -0.11 -0.95 17.17 2.25 0.04 -0.91 16 13 C -0.18 -1.26 9.99 -39.52 -0.39 -1.66 16 14 C 0.19 1.80 7.28 -38.96 -0.28 1.51 16 15 F -0.10 -1.09 15.54 2.25 0.04 -1.06 16 16 C 0.51 10.41 7.10 -10.99 -0.08 10.33 16 17 O -0.52 -12.89 16.09 -14.05 -0.23 -13.12 16 18 N -0.59 -12.12 2.86 -182.95 -0.52 -12.65 16 19 C 0.08 1.11 8.92 59.85 0.53 1.64 16 20 C 0.25 6.25 5.16 -5.19 -0.03 6.22 16 21 C -0.53 -14.75 9.38 -34.44 -0.32 -15.08 16 22 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 23 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 24 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 25 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 26 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.96 5.12 -51.93 -0.27 0.70 16 32 H 0.18 1.74 7.61 -52.49 -0.40 1.34 16 33 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.05 0.63 7.04 -51.93 -0.37 0.26 16 35 H 0.06 0.73 6.06 -51.93 -0.31 0.42 16 36 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 37 H 0.05 1.32 7.43 -51.93 -0.39 0.93 16 38 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 354.91 15.07 5.35 5.35 Total: -1.00 -33.57 354.91 -5.65 -39.22 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -3.70 Total: -3.22 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: -1.68 Total: 9.42 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.21 Total: -38.02 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.92 Total: -26.24 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.11 Total: -3.12 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.57 -5.65 -39.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785595902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.513 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds