Wall clock time and date at job start Wed Apr 1 2020 03:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46670 * 2 1 4 4 O 1.45197 * 109.47339 * 120.00165 * 2 1 3 5 5 C 1.34749 * 116.99899 * 270.00152 * 4 2 1 6 6 O 1.21509 * 119.99993 * 359.97438 * 5 4 2 7 7 C 1.47432 * 119.99685 * 180.02562 * 5 4 2 8 8 C 1.39811 * 120.14029 * 0.02562 * 7 5 4 9 9 C 1.37893 * 119.87263 * 180.02562 * 8 7 5 10 10 F 1.35108 * 119.92721 * 179.97438 * 9 8 7 11 11 C 1.38966 * 120.15368 * 0.02562 * 9 8 7 12 12 F 1.35102 * 119.86217 * 179.97438 * 11 9 8 13 13 C 1.38457 * 120.27604 * 359.97438 * 11 9 8 14 14 C 1.38198 * 120.12658 * 359.76571 * 13 11 9 15 15 F 1.35095 * 120.08110 * 180.27922 * 14 13 11 16 16 C 1.50702 * 109.47230 * 240.00733 * 2 1 3 17 17 O 1.21283 * 119.99478 * 244.99823 * 16 2 1 18 18 N 1.34773 * 120.00430 * 64.99170 * 16 2 1 19 19 C 1.46506 * 119.99969 * 0.02562 * 18 16 2 20 20 C 1.46499 * 120.00036 * 179.72648 * 18 16 2 21 21 C 1.50703 * 109.47126 * 270.27831 * 20 18 16 22 22 H 1.08002 * 119.99820 * 359.97438 * 21 20 18 23 23 C 1.37876 * 119.99889 * 180.02562 * 21 20 18 24 24 N 1.31518 * 120.00192 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00045 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46980 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47015 * 119.99649 * 25 23 21 28 28 H 1.48496 * 109.47036 * 240.00093 * 25 23 21 29 29 H 1.09002 * 109.46624 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46972 * 299.99294 * 1 2 3 31 31 H 1.09005 * 109.47553 * 60.00228 * 1 2 3 32 32 H 1.07996 * 120.06748 * 0.02829 * 8 7 5 33 33 H 1.07997 * 119.93650 * 180.02562 * 13 11 9 34 34 H 1.08999 * 109.46892 * 269.72362 * 19 18 16 35 35 H 1.09000 * 109.46803 * 29.71536 * 19 18 16 36 36 H 1.09000 * 109.47214 * 149.72329 * 19 18 16 37 37 H 1.08994 * 109.47173 * 30.28203 * 20 18 16 38 38 H 1.09005 * 109.47077 * 150.28374 * 20 18 16 39 39 H 0.96995 * 119.99689 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2179 0.0669 2.2853 6 8 1.9977 1.2615 2.2544 7 6 2.7093 -0.5603 3.5258 8 6 2.9651 -1.9343 3.5641 9 6 3.4241 -2.5153 4.7274 10 9 3.6712 -3.8430 4.7658 11 6 3.6320 -1.7385 5.8608 12 9 4.0813 -2.3139 6.9975 13 6 3.3807 -0.3772 5.8298 14 6 2.9256 0.2179 4.6685 15 9 2.6861 1.5470 4.6377 16 6 2.0324 -0.7103 -1.2306 17 8 2.6530 -1.7465 -1.1216 18 7 1.7918 -0.1940 -2.4521 19 6 1.0425 1.0580 -2.5836 20 6 2.2854 -0.8814 -3.6479 21 6 3.6681 -0.3821 -3.9797 22 1 4.1325 0.3722 -3.3618 23 6 4.3397 -0.8874 -5.0726 24 7 3.7739 -1.8055 -5.8254 25 14 6.0533 -0.2679 -5.4843 26 1 6.4616 0.7563 -4.4897 27 1 7.0114 -1.4018 -5.4482 28 1 6.0492 0.3337 -6.8419 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.8037 -2.5395 2.6843 33 1 3.5446 0.2213 6.7137 34 1 -0.0212 0.8370 -2.6727 35 1 1.2123 1.6773 -1.7029 36 1 1.3786 1.5909 -3.4731 37 1 2.3218 -1.9546 -3.4611 38 1 1.6162 -0.6807 -4.4846 39 1 4.2463 -2.1607 -6.5945 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785595902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:45 Heat of formation + Delta-G solvation = -231.935099 kcal Electronic energy + Delta-G solvation = -29794.276295 eV Core-core repulsion = 24866.867852 eV Total energy + Delta-G solvation = -4927.408443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.79367 -50.31221 -49.84669 -42.07091 -40.70154 -39.61675 -37.73047 -36.71065 -34.92125 -33.42697 -32.41896 -31.47855 -29.60725 -27.67550 -26.46716 -25.76252 -24.82598 -23.95918 -22.39937 -20.49300 -19.99011 -19.50586 -19.02447 -18.71886 -18.35438 -18.02670 -17.85016 -17.48433 -17.27349 -17.09989 -16.68926 -16.53105 -16.30419 -16.21562 -15.85220 -15.80847 -15.51425 -15.01519 -14.86030 -14.63437 -14.28226 -14.11812 -13.73884 -13.69244 -13.52932 -13.33688 -13.12038 -13.05567 -12.96933 -12.82465 -12.64018 -12.53057 -12.23384 -12.01342 -11.93712 -11.69729 -10.66092 -10.64631 -10.59186 -10.03522 -9.52581 -8.24752 -6.39077 -1.10125 -0.50540 0.92528 1.04163 1.35977 1.38381 1.49639 1.60477 1.93108 2.18599 2.27781 2.40365 2.55723 2.95028 3.00770 3.05558 3.24271 3.37560 3.60437 3.71795 3.81721 4.05111 4.16780 4.31648 4.33829 4.46702 4.55664 4.58042 4.61690 4.68785 4.87110 4.93878 5.08045 5.11036 5.20886 5.23665 5.50331 5.76918 6.02502 6.31221 6.58883 6.70048 7.19010 7.34856 8.82697 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.002663 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.102284 B =10511.012911 C =11313.698349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.080 3.920 3 H 0.119 0.881 4 O -0.333 6.333 5 C 0.511 3.489 6 O -0.505 6.505 7 C -0.154 4.154 8 C -0.032 4.032 9 C 0.046 3.954 10 F -0.124 7.124 11 C 0.147 3.853 12 F -0.110 7.110 13 C -0.152 4.152 14 C 0.189 3.811 15 F -0.107 7.107 16 C 0.500 3.500 17 O -0.576 6.576 18 N -0.599 5.599 19 C 0.067 3.933 20 C 0.260 3.740 21 C -0.546 4.546 22 H 0.052 0.948 23 C 0.010 3.990 24 N -0.926 5.926 25 Si 0.966 3.034 26 H -0.269 1.269 27 H -0.282 1.282 28 H -0.268 1.268 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.172 0.828 33 H 0.205 0.795 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.003 0.997 38 H 0.034 0.966 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.347 5.678 24.305 25.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.022 3.978 3 H 0.137 0.863 4 O -0.248 6.248 5 C 0.356 3.644 6 O -0.395 6.395 7 C -0.157 4.157 8 C -0.051 4.051 9 C 0.026 3.974 10 F -0.102 7.102 11 C 0.126 3.874 12 F -0.088 7.088 13 C -0.171 4.171 14 C 0.168 3.832 15 F -0.085 7.085 16 C 0.287 3.713 17 O -0.456 6.456 18 N -0.331 5.331 19 C -0.074 4.074 20 C 0.139 3.861 21 C -0.584 4.584 22 H 0.070 0.930 23 C -0.189 4.189 24 N -0.565 5.565 25 Si 0.790 3.210 26 H -0.193 1.193 27 H -0.207 1.207 28 H -0.193 1.193 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.128 0.872 32 H 0.189 0.811 33 H 0.222 0.778 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.021 0.979 38 H 0.052 0.948 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.083 5.378 24.172 25.499 hybrid contribution 1.058 -0.189 -0.638 1.249 sum -5.026 5.189 23.534 24.618 Atomic orbital electron populations 1.22317 0.88915 1.04678 1.06095 1.22634 0.98039 0.96796 0.80290 0.86346 1.86627 1.76989 1.41484 1.19730 1.20913 0.74625 0.84941 0.83949 1.90891 1.48473 1.15734 1.84363 1.18902 1.10935 0.94172 0.91658 1.21282 0.92687 0.93179 0.97948 1.17463 1.06725 0.78973 0.94271 1.91593 1.92112 1.29699 1.96819 1.17493 0.97382 0.90905 0.81634 1.91622 1.85656 1.84430 1.47064 1.21064 1.03443 0.92853 0.99769 1.17257 0.95689 0.78017 0.92190 1.91653 1.90757 1.29393 1.96670 1.20579 0.80174 0.85460 0.85091 1.90670 1.42208 1.26015 1.86721 1.48044 1.53944 1.25429 1.05651 1.22214 0.96572 0.84511 1.04142 1.18858 0.93778 0.91919 0.81566 1.21721 1.02122 1.23146 1.11433 0.92993 1.25813 1.02287 0.94943 0.95864 1.70041 1.39742 1.29126 1.17613 0.85395 0.78960 0.78204 0.78418 1.19341 1.20742 1.19282 0.91098 0.89184 0.87216 0.81076 0.77807 0.89586 0.89361 0.90718 0.97926 0.94807 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 9.27 71.98 0.67 -2.91 16 2 C 0.08 2.45 2.17 29.85 0.06 2.52 16 3 H 0.12 3.38 6.15 -2.39 -0.01 3.36 16 4 O -0.33 -10.34 8.67 -50.22 -0.44 -10.78 16 5 C 0.51 13.91 7.86 70.24 0.55 14.46 16 6 O -0.51 -15.02 14.59 19.81 0.29 -14.73 16 7 C -0.15 -3.25 5.88 -20.06 -0.12 -3.37 16 8 C -0.03 -0.61 9.59 22.57 0.22 -0.40 16 9 C 0.05 0.80 7.29 22.36 0.16 0.96 16 10 F -0.12 -2.49 17.17 44.97 0.77 -1.72 16 11 C 0.15 2.02 7.31 22.50 0.16 2.19 16 12 F -0.11 -1.58 17.17 44.97 0.77 -0.80 16 13 C -0.15 -1.68 9.99 22.31 0.22 -1.46 16 14 C 0.19 3.22 7.28 22.67 0.17 3.39 16 15 F -0.11 -2.17 15.54 44.97 0.70 -1.47 16 16 C 0.50 20.88 7.10 87.66 0.62 21.50 16 17 O -0.58 -30.07 16.09 15.71 0.25 -29.82 16 18 N -0.60 -24.66 2.86 -851.12 -2.43 -27.09 16 19 C 0.07 1.87 8.92 127.77 1.14 3.01 16 20 C 0.26 13.67 5.16 85.63 0.44 14.11 16 21 C -0.55 -31.12 9.38 25.60 0.24 -30.88 16 22 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 23 C 0.01 0.59 5.46 84.65 0.46 1.05 16 24 N -0.93 -55.20 13.29 21.45 0.28 -54.91 16 25 Si 0.97 44.65 29.54 68.60 2.03 46.67 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 27 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 28 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.11 1.97 5.12 -2.38 -0.01 1.96 16 32 H 0.17 3.51 7.61 -2.91 -0.02 3.49 16 33 H 0.20 0.87 8.06 -2.91 -0.02 0.85 16 34 H 0.09 1.83 7.04 -2.39 -0.02 1.82 16 35 H 0.09 1.95 6.06 -2.39 -0.01 1.94 16 36 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 37 H 0.00 0.16 7.43 -2.39 -0.02 0.14 16 38 H 0.03 1.77 8.07 -2.38 -0.02 1.75 16 39 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -75.64 354.91 8.36 -67.28 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: 1.13 Total: 3.19 kcal Atomic # 6 Polarization: 19.17 SS G_CDS: 5.00 Total: 24.17 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -2.15 Total: -82.00 kcal Atomic # 8 Polarization: -55.43 SS G_CDS: 0.11 Total: -55.32 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 2.24 Total: -3.99 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -75.64 8.36 -67.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785595902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.653 kcal (2) G-P(sol) polarization free energy of solvation -75.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds