Wall clock time and date at job start Wed Apr 1 2020 03:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 O 1.45206 * 109.47226 * 239.99460 * 2 1 3 5 5 C 1.34755 * 116.99337 * 90.00233 * 4 2 1 6 6 O 1.21502 * 120.00223 * 0.02562 * 5 4 2 7 7 C 1.47435 * 119.99512 * 180.02562 * 5 4 2 8 8 C 1.39814 * 120.14172 * 359.71714 * 7 5 4 9 9 C 1.37890 * 119.87336 * 179.76872 * 8 7 5 10 10 F 1.35104 * 119.92709 * 180.25917 * 9 8 7 11 11 C 1.38967 * 120.15077 * 0.49250 * 9 8 7 12 12 F 1.35098 * 119.85856 * 179.76433 * 11 9 8 13 13 C 1.38445 * 120.27649 * 359.78364 * 11 9 8 14 14 C 1.38200 * 120.13033 * 359.95671 * 13 11 9 15 15 F 1.35096 * 120.07778 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 17 17 O 1.21283 * 120.00236 * 114.99716 * 16 2 1 18 18 N 1.34774 * 119.99861 * 294.99892 * 16 2 1 19 19 C 1.46507 * 120.00108 * 359.97438 * 18 16 2 20 20 C 1.46496 * 120.00367 * 180.02562 * 18 16 2 21 21 C 1.50695 * 109.47370 * 89.99805 * 20 18 16 22 22 H 1.08005 * 120.00163 * 0.02562 * 21 20 18 23 23 C 1.37882 * 120.00369 * 180.02562 * 21 20 18 24 24 N 1.31512 * 119.99460 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00346 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47115 * 59.99425 * 25 23 21 27 27 H 1.48496 * 109.47344 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47009 * 299.99602 * 25 23 21 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.08008 * 120.06024 * 0.02562 * 8 7 5 33 33 H 1.08008 * 119.93436 * 179.97438 * 13 11 9 34 34 H 1.09002 * 109.47123 * 89.99538 * 19 18 16 35 35 H 1.08997 * 109.47369 * 209.99929 * 19 18 16 36 36 H 1.09002 * 109.47042 * 330.00239 * 19 18 16 37 37 H 1.09001 * 109.47223 * 209.99860 * 20 18 16 38 38 H 1.09007 * 109.46674 * 329.99720 * 20 18 16 39 39 H 0.96998 * 120.00028 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2180 0.0668 -2.2854 6 8 1.9978 1.2614 -2.2544 7 6 2.7082 -0.5606 -3.5262 8 6 2.9681 -1.9338 -3.5633 9 6 3.4219 -2.5157 -4.7282 10 9 3.6684 -3.8435 -4.7668 11 6 3.6310 -1.7386 -5.8612 12 9 4.0803 -2.3141 -6.9979 13 6 3.3811 -0.3773 -5.8297 14 6 2.9210 0.2170 -4.6700 15 9 2.6780 1.5456 -4.6403 16 6 2.0324 -0.7105 1.2305 17 8 2.6530 -1.7468 1.1215 18 7 1.7919 -0.1942 2.4520 19 6 1.0427 1.0579 2.5837 20 6 2.2807 -0.8845 3.6482 21 6 3.6620 -0.3861 3.9866 22 1 4.1291 0.3696 3.3723 23 6 4.3298 -0.8948 5.0804 24 7 3.7609 -1.8147 5.8286 25 14 6.0417 -0.2766 5.5002 26 1 5.9907 1.1848 5.7588 27 1 6.5372 -0.9763 6.7127 28 1 6.9581 -0.5464 4.3632 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.8097 -2.5385 -2.6825 33 1 3.5459 0.2215 -6.7134 34 1 -0.0215 0.8374 2.6677 35 1 1.3755 1.5884 3.4758 36 1 1.2166 1.6794 1.7052 37 1 1.6082 -0.6857 4.4827 38 1 2.3177 -1.9573 3.4589 39 1 4.2305 -2.1723 6.5983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785595903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:49 Heat of formation + Delta-G solvation = -212.660088 kcal Electronic energy + Delta-G solvation = -29791.247860 eV Core-core repulsion = 24864.675244 eV Total energy + Delta-G solvation = -4926.572615 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.07152 -49.51519 -49.09997 -40.92373 -39.35241 -38.62104 -36.52817 -34.99195 -33.00912 -32.29113 -31.36627 -30.69505 -27.76337 -26.26649 -25.44958 -24.42039 -23.81094 -22.57772 -21.28828 -19.15154 -18.96413 -18.71062 -18.12909 -17.39748 -17.09269 -16.84463 -16.57118 -16.34867 -16.15814 -15.80371 -15.69055 -15.48059 -15.23931 -15.08691 -14.84575 -14.64887 -14.36137 -13.98212 -13.65177 -13.30384 -12.98688 -12.92975 -12.46878 -12.33885 -12.31459 -12.20998 -12.12561 -11.75566 -11.52087 -11.23976 -10.97997 -10.87008 -10.82149 -10.60772 -10.20866 -9.89474 -9.71377 -9.27300 -8.99833 -8.48122 -7.79518 -6.09552 -4.14809 -0.30919 0.19653 1.86465 2.11841 2.77207 2.94109 3.17654 3.29731 3.29787 3.34184 3.37836 3.66710 3.68092 3.79929 4.13793 4.37759 4.41295 4.70389 4.80061 4.85896 4.93335 4.99546 5.04200 5.18455 5.25169 5.30562 5.45529 5.57411 5.58030 5.79186 5.91728 5.94897 6.16336 6.17533 6.91740 7.33152 7.37875 7.45247 7.85984 8.15514 8.21977 8.77856 8.93151 9.50430 10.98588 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.002660 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.475812 B =10522.809985 C =11327.250936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 H 0.109 0.891 4 O -0.318 6.318 5 C 0.510 3.490 6 O -0.487 6.487 7 C -0.141 4.141 8 C -0.034 4.034 9 C 0.049 3.951 10 F -0.116 7.116 11 C 0.135 3.865 12 F -0.112 7.112 13 C -0.179 4.179 14 C 0.189 3.811 15 F -0.099 7.099 16 C 0.509 3.491 17 O -0.519 6.519 18 N -0.594 5.594 19 C 0.075 3.925 20 C 0.247 3.753 21 C -0.531 4.531 22 H 0.057 0.943 23 C 0.063 3.937 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.276 1.276 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.179 0.821 33 H 0.170 0.830 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.037 0.963 38 H 0.046 0.954 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.254 3.887 -22.489 23.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 H 0.127 0.873 4 O -0.233 6.233 5 C 0.353 3.647 6 O -0.376 6.376 7 C -0.144 4.144 8 C -0.053 4.053 9 C 0.029 3.971 10 F -0.094 7.094 11 C 0.114 3.886 12 F -0.090 7.090 13 C -0.199 4.199 14 C 0.169 3.831 15 F -0.076 7.076 16 C 0.293 3.707 17 O -0.395 6.395 18 N -0.328 5.328 19 C -0.069 4.069 20 C 0.129 3.871 21 C -0.570 4.570 22 H 0.075 0.925 23 C -0.140 4.140 24 N -0.533 5.533 25 Si 0.726 3.274 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.196 0.804 33 H 0.188 0.812 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.955 3.540 -22.337 23.387 hybrid contribution 1.055 0.419 0.126 1.142 sum -4.900 3.958 -22.211 23.087 Atomic orbital electron populations 1.22299 0.92063 1.04217 1.04249 1.22738 0.95911 0.97746 0.82280 0.87334 1.86626 1.76581 1.40768 1.19316 1.20503 0.75238 0.85114 0.83834 1.90911 1.47403 1.15146 1.84095 1.19009 1.09358 0.93739 0.92247 1.21447 0.92443 0.93584 0.97815 1.17428 1.06515 0.79223 0.93941 1.91611 1.92004 1.29007 1.96770 1.17518 0.98147 0.90723 0.82178 1.91605 1.85782 1.84365 1.47249 1.20868 1.05841 0.93377 0.99780 1.17180 0.95439 0.78500 0.92023 1.91671 1.90547 1.28805 1.96618 1.19707 0.81258 0.85968 0.83786 1.90709 1.39655 1.23387 1.85729 1.48073 1.53920 1.23916 1.06852 1.21866 0.95404 0.86687 1.02926 1.19362 0.94322 0.93801 0.79664 1.21382 1.01039 1.23139 1.11426 0.92453 1.24927 0.98223 0.94839 0.95986 1.69914 1.38193 1.27933 1.17212 0.86543 0.84181 0.78815 0.77813 1.20195 1.21104 1.20132 0.91168 0.89059 0.90794 0.80356 0.81234 0.93024 0.90199 0.92308 0.94541 0.93595 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 9.28 37.16 0.34 -1.71 16 2 C 0.07 1.12 2.17 -27.88 -0.06 1.06 16 3 H 0.11 1.63 6.15 -51.93 -0.32 1.31 16 4 O -0.32 -4.92 8.67 -47.31 -0.41 -5.33 16 5 C 0.51 7.07 7.86 34.48 0.27 7.34 16 6 O -0.49 -7.51 14.59 -19.27 -0.28 -7.79 16 7 C -0.14 -1.54 5.88 -104.93 -0.62 -2.16 16 8 C -0.03 -0.33 9.59 -39.12 -0.37 -0.71 16 9 C 0.05 0.45 7.29 -39.44 -0.29 0.17 16 10 F -0.12 -1.19 17.17 2.25 0.04 -1.16 16 11 C 0.14 1.09 7.31 -39.23 -0.29 0.80 16 12 F -0.11 -0.95 17.17 2.25 0.04 -0.91 16 13 C -0.18 -1.26 9.99 -39.52 -0.39 -1.66 16 14 C 0.19 1.79 7.28 -38.96 -0.28 1.51 16 15 F -0.10 -1.09 15.54 2.25 0.04 -1.06 16 16 C 0.51 10.41 7.10 -10.98 -0.08 10.33 16 17 O -0.52 -12.90 16.09 -14.05 -0.23 -13.13 16 18 N -0.59 -12.13 2.86 -182.95 -0.52 -12.65 16 19 C 0.08 1.11 8.92 59.85 0.53 1.65 16 20 C 0.25 6.27 5.16 -5.20 -0.03 6.25 16 21 C -0.53 -14.81 9.39 -34.44 -0.32 -15.13 16 22 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 23 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 25 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.09 0.96 5.12 -51.93 -0.27 0.70 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.18 1.74 7.61 -52.48 -0.40 1.34 16 33 H 0.17 0.74 8.06 -52.48 -0.42 0.32 16 34 H 0.05 0.63 7.02 -51.93 -0.36 0.26 16 35 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 36 H 0.06 0.73 6.08 -51.93 -0.32 0.41 16 37 H 0.04 0.92 8.07 -51.93 -0.42 0.51 16 38 H 0.05 1.31 7.42 -51.92 -0.39 0.93 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 354.91 15.07 5.35 5.35 Total: -1.00 -33.54 354.91 -5.65 -39.19 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -3.70 Total: -3.14 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: -1.68 Total: 9.41 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.21 Total: -38.05 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.92 Total: -26.24 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.11 Total: -3.12 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.54 -5.65 -39.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785595903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.473 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds