Wall clock time and date at job start Wed Apr 1 2020 03:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 O 1.45206 * 109.47226 * 239.99460 * 2 1 3 5 5 C 1.34755 * 116.99337 * 90.00233 * 4 2 1 6 6 O 1.21502 * 120.00223 * 0.02562 * 5 4 2 7 7 C 1.47435 * 119.99512 * 180.02562 * 5 4 2 8 8 C 1.39814 * 120.14172 * 359.71714 * 7 5 4 9 9 C 1.37890 * 119.87336 * 179.76872 * 8 7 5 10 10 F 1.35104 * 119.92709 * 180.25917 * 9 8 7 11 11 C 1.38967 * 120.15077 * 0.49250 * 9 8 7 12 12 F 1.35098 * 119.85856 * 179.76433 * 11 9 8 13 13 C 1.38445 * 120.27649 * 359.78364 * 11 9 8 14 14 C 1.38200 * 120.13033 * 359.95671 * 13 11 9 15 15 F 1.35096 * 120.07778 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 17 17 O 1.21283 * 120.00236 * 114.99716 * 16 2 1 18 18 N 1.34774 * 119.99861 * 294.99892 * 16 2 1 19 19 C 1.46507 * 120.00108 * 359.97438 * 18 16 2 20 20 C 1.46496 * 120.00367 * 180.02562 * 18 16 2 21 21 C 1.50695 * 109.47370 * 89.99805 * 20 18 16 22 22 H 1.08005 * 120.00163 * 0.02562 * 21 20 18 23 23 C 1.37882 * 120.00369 * 180.02562 * 21 20 18 24 24 N 1.31512 * 119.99460 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00346 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47115 * 59.99425 * 25 23 21 27 27 H 1.48496 * 109.47344 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47009 * 299.99602 * 25 23 21 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.08008 * 120.06024 * 0.02562 * 8 7 5 33 33 H 1.08008 * 119.93436 * 179.97438 * 13 11 9 34 34 H 1.09002 * 109.47123 * 89.99538 * 19 18 16 35 35 H 1.08997 * 109.47369 * 209.99929 * 19 18 16 36 36 H 1.09002 * 109.47042 * 330.00239 * 19 18 16 37 37 H 1.09001 * 109.47223 * 209.99860 * 20 18 16 38 38 H 1.09007 * 109.46674 * 329.99720 * 20 18 16 39 39 H 0.96998 * 120.00028 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6846 -1.1855 5 6 2.2180 0.0668 -2.2854 6 8 1.9978 1.2614 -2.2544 7 6 2.7082 -0.5606 -3.5262 8 6 2.9681 -1.9338 -3.5633 9 6 3.4219 -2.5157 -4.7282 10 9 3.6684 -3.8435 -4.7668 11 6 3.6310 -1.7386 -5.8612 12 9 4.0803 -2.3141 -6.9979 13 6 3.3811 -0.3773 -5.8297 14 6 2.9210 0.2170 -4.6700 15 9 2.6780 1.5456 -4.6403 16 6 2.0324 -0.7105 1.2305 17 8 2.6530 -1.7468 1.1215 18 7 1.7919 -0.1942 2.4520 19 6 1.0427 1.0579 2.5837 20 6 2.2807 -0.8845 3.6482 21 6 3.6620 -0.3861 3.9866 22 1 4.1291 0.3696 3.3723 23 6 4.3298 -0.8948 5.0804 24 7 3.7609 -1.8147 5.8286 25 14 6.0417 -0.2766 5.5002 26 1 5.9907 1.1848 5.7588 27 1 6.5372 -0.9763 6.7127 28 1 6.9581 -0.5464 4.3632 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.8097 -2.5385 -2.6825 33 1 3.5459 0.2215 -6.7134 34 1 -0.0215 0.8374 2.6677 35 1 1.3755 1.5884 3.4758 36 1 1.2166 1.6794 1.7052 37 1 1.6082 -0.6857 4.4827 38 1 2.3177 -1.9573 3.4589 39 1 4.2305 -2.1723 6.5983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785595903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:48 Heat of formation + Delta-G solvation = -231.846278 kcal Electronic energy + Delta-G solvation = -29792.079835 eV Core-core repulsion = 24864.675244 eV Total energy + Delta-G solvation = -4927.404591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.79506 -50.31209 -49.84801 -42.07072 -40.70197 -39.61748 -37.73067 -36.71104 -34.92016 -33.42667 -32.41886 -31.47904 -29.60587 -27.67609 -26.46678 -25.76035 -24.82528 -23.95802 -22.39899 -20.49285 -19.99015 -19.50614 -19.02441 -18.71352 -18.35378 -18.02622 -17.85129 -17.48475 -17.27347 -17.09961 -16.68869 -16.53363 -16.30335 -16.21679 -15.85429 -15.80873 -15.51499 -15.01767 -14.85746 -14.63605 -14.27286 -14.11182 -13.74040 -13.69276 -13.52752 -13.33691 -13.12697 -13.05575 -12.97650 -12.81400 -12.63786 -12.52391 -12.21042 -12.01456 -11.93811 -11.73899 -10.65256 -10.64642 -10.59225 -10.03564 -9.52667 -8.24372 -6.38893 -1.10138 -0.50577 0.92682 1.04024 1.36635 1.40346 1.47540 1.60417 1.93075 2.18533 2.27703 2.40679 2.55700 2.94998 3.00728 3.05846 3.24244 3.37514 3.60407 3.71783 3.81739 4.05083 4.16756 4.31652 4.33845 4.46600 4.55554 4.57958 4.61633 4.68828 4.87116 4.93931 5.08011 5.11051 5.20726 5.23630 5.50070 5.76917 6.02734 6.31202 6.58883 6.69769 7.19002 7.34881 8.82730 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.002660 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.475812 B =10522.809985 C =11327.250936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.080 3.920 3 H 0.119 0.881 4 O -0.333 6.333 5 C 0.511 3.489 6 O -0.505 6.505 7 C -0.154 4.154 8 C -0.032 4.032 9 C 0.046 3.954 10 F -0.124 7.124 11 C 0.147 3.853 12 F -0.110 7.110 13 C -0.152 4.152 14 C 0.189 3.811 15 F -0.107 7.107 16 C 0.500 3.500 17 O -0.577 6.577 18 N -0.598 5.598 19 C 0.067 3.933 20 C 0.260 3.740 21 C -0.548 4.548 22 H 0.052 0.948 23 C 0.011 3.989 24 N -0.926 5.926 25 Si 0.965 3.035 26 H -0.260 1.260 27 H -0.277 1.277 28 H -0.279 1.279 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.172 0.828 33 H 0.205 0.795 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.034 0.966 38 H 0.002 0.998 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.310 5.737 -24.299 25.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.023 3.977 3 H 0.137 0.863 4 O -0.248 6.248 5 C 0.356 3.644 6 O -0.394 6.394 7 C -0.157 4.157 8 C -0.051 4.051 9 C 0.026 3.974 10 F -0.102 7.102 11 C 0.126 3.874 12 F -0.088 7.088 13 C -0.171 4.171 14 C 0.169 3.831 15 F -0.085 7.085 16 C 0.287 3.713 17 O -0.456 6.456 18 N -0.331 5.331 19 C -0.074 4.074 20 C 0.139 3.861 21 C -0.587 4.587 22 H 0.070 0.930 23 C -0.189 4.189 24 N -0.565 5.565 25 Si 0.789 3.211 26 H -0.185 1.185 27 H -0.202 1.202 28 H -0.205 1.205 29 H 0.108 0.892 30 H 0.128 0.872 31 H 0.089 0.911 32 H 0.189 0.811 33 H 0.222 0.778 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.052 0.948 38 H 0.020 0.980 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.047 5.434 -24.159 25.490 hybrid contribution 1.058 -0.191 0.623 1.242 sum -4.989 5.243 -23.535 24.623 Atomic orbital electron populations 1.22317 0.88919 1.04673 1.06099 1.22636 0.98033 0.96801 0.80279 0.86321 1.86632 1.76992 1.41482 1.19739 1.20912 0.74621 0.84942 0.83950 1.90889 1.48460 1.15732 1.84366 1.18902 1.10937 0.94201 0.91627 1.21284 0.92706 0.93177 0.97946 1.17462 1.06770 0.78960 0.94240 1.91592 1.92121 1.29693 1.96819 1.17489 0.97381 0.90893 0.81649 1.91621 1.85657 1.84429 1.47065 1.21065 1.03395 0.92861 0.99814 1.17255 0.95652 0.78037 0.92201 1.91653 1.90698 1.29443 1.96672 1.20584 0.80180 0.85452 0.85096 1.90671 1.42211 1.26030 1.86723 1.48042 1.54038 1.25345 1.05632 1.22213 0.96564 0.84504 1.04151 1.18846 0.93807 0.91861 0.81542 1.21672 1.02264 1.23166 1.11557 0.92951 1.25812 1.02267 0.94920 0.95863 1.70026 1.39880 1.28922 1.17679 0.85508 0.78965 0.79125 0.77475 1.18462 1.20222 1.20482 0.89179 0.87215 0.91106 0.81085 0.77801 0.89598 0.90718 0.89348 0.94834 0.97957 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 9.28 71.98 0.67 -2.91 16 2 C 0.08 2.45 2.17 29.85 0.06 2.52 16 3 H 0.12 3.38 6.15 -2.39 -0.01 3.36 16 4 O -0.33 -10.35 8.67 -50.28 -0.44 -10.78 16 5 C 0.51 13.90 7.86 70.25 0.55 14.46 16 6 O -0.50 -15.00 14.59 19.83 0.29 -14.71 16 7 C -0.15 -3.25 5.88 -20.06 -0.12 -3.37 16 8 C -0.03 -0.62 9.59 22.57 0.22 -0.40 16 9 C 0.05 0.80 7.29 22.36 0.16 0.96 16 10 F -0.12 -2.49 17.17 44.97 0.77 -1.72 16 11 C 0.15 2.02 7.31 22.49 0.16 2.19 16 12 F -0.11 -1.58 17.17 44.97 0.77 -0.80 16 13 C -0.15 -1.68 9.99 22.31 0.22 -1.46 16 14 C 0.19 3.22 7.28 22.67 0.17 3.39 16 15 F -0.11 -2.16 15.54 44.97 0.70 -1.46 16 16 C 0.50 20.88 7.10 87.66 0.62 21.50 16 17 O -0.58 -30.12 16.09 15.71 0.25 -29.86 16 18 N -0.60 -24.66 2.86 -851.11 -2.43 -27.09 16 19 C 0.07 1.87 8.92 127.77 1.14 3.01 16 20 C 0.26 13.72 5.16 85.63 0.44 14.16 16 21 C -0.55 -31.26 9.39 25.60 0.24 -31.02 16 22 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 23 C 0.01 0.62 5.46 84.66 0.46 1.08 16 24 N -0.93 -55.27 13.29 21.45 0.28 -54.99 16 25 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 26 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 27 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 28 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.11 1.97 5.12 -2.39 -0.01 1.96 16 31 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.17 3.52 7.61 -2.91 -0.02 3.50 16 33 H 0.20 0.87 8.06 -2.91 -0.02 0.85 16 34 H 0.09 1.83 7.02 -2.39 -0.02 1.81 16 35 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 36 H 0.09 1.95 6.08 -2.39 -0.01 1.94 16 37 H 0.03 1.76 8.07 -2.39 -0.02 1.74 16 38 H 0.00 0.14 7.42 -2.38 -0.02 0.12 16 39 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -75.65 354.91 8.36 -67.28 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: 1.13 Total: 3.43 kcal Atomic # 6 Polarization: 19.10 SS G_CDS: 5.01 Total: 24.10 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -2.15 Total: -82.08 kcal Atomic # 8 Polarization: -55.46 SS G_CDS: 0.11 Total: -55.36 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 2.24 Total: -3.99 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -75.65 8.36 -67.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785595903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.563 kcal (2) G-P(sol) polarization free energy of solvation -75.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds