Wall clock time and date at job start Wed Apr 1 2020 03:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47084 * 2 1 4 4 C 1.46495 * 120.00292 * 269.99991 * 3 2 1 5 5 C 1.50699 * 109.47321 * 270.00260 * 4 3 2 6 6 H 1.08001 * 119.99835 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00016 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99642 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99769 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47040 * 90.00373 * 9 7 5 11 11 H 1.48506 * 109.47083 * 209.99737 * 9 7 5 12 12 H 1.48499 * 109.47300 * 329.99953 * 9 7 5 13 13 C 1.34776 * 119.99574 * 90.00231 * 3 2 1 14 14 O 1.21288 * 119.99779 * 179.97438 * 13 3 2 15 15 C 1.50701 * 120.00296 * 0.02562 * 13 3 2 16 16 O 1.45196 * 109.47134 * 179.97438 * 15 13 3 17 17 C 1.34753 * 117.00079 * 179.97438 * 16 15 13 18 18 O 1.21503 * 119.99808 * 359.97438 * 17 16 15 19 19 C 1.47439 * 120.00027 * 180.02562 * 17 16 15 20 20 C 1.39816 * 120.14008 * 359.97438 * 19 17 16 21 21 C 1.37887 * 119.87290 * 180.02562 * 20 19 17 22 22 F 1.35102 * 119.92395 * 179.97438 * 21 20 19 23 23 C 1.38962 * 120.15120 * 359.74337 * 21 20 19 24 24 F 1.35102 * 119.85941 * 180.27602 * 23 21 20 25 25 C 1.38450 * 120.28012 * 0.51508 * 23 21 20 26 26 C 1.38200 * 120.12415 * 359.48215 * 25 23 21 27 27 F 1.35103 * 120.07898 * 180.28071 * 26 25 23 28 28 H 1.09001 * 109.47133 * 299.99829 * 1 2 3 29 29 H 1.09004 * 109.47358 * 59.99306 * 1 2 3 30 30 H 1.08998 * 109.47684 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46693 * 240.00327 * 2 1 3 32 32 H 1.08999 * 109.46917 * 120.00537 * 2 1 3 33 33 H 1.09005 * 109.46839 * 30.00505 * 4 3 2 34 34 H 1.09000 * 109.47153 * 150.00035 * 4 3 2 35 35 H 0.97001 * 119.99418 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.46997 * 59.99978 * 15 13 3 37 37 H 1.08996 * 109.46796 * 299.99644 * 15 13 3 38 38 H 1.08005 * 120.06062 * 359.97438 * 20 19 17 39 39 H 1.08002 * 119.94182 * 179.76877 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2309 -1.0958 7 6 4.1490 2.3898 -2.8780 8 7 3.3490 3.1259 -3.6180 9 14 5.9134 2.0968 -3.4169 10 1 5.9774 0.8755 -4.2592 11 1 6.3920 3.2640 -4.2004 12 1 6.7735 1.9180 -2.2196 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9924 1.3058 2.4723 16 8 2.3074 2.1952 3.5760 17 6 2.1358 1.7095 4.8212 18 8 1.7334 0.5741 4.9803 19 6 2.4351 2.5563 5.9904 20 6 2.8977 3.8634 5.8107 21 6 3.1764 4.6503 6.9081 22 9 3.6240 5.9134 6.7356 23 6 2.9935 4.1489 8.1911 24 9 3.2631 4.9269 9.2622 25 6 2.5408 2.8537 8.3765 26 6 2.2578 2.0549 7.2847 27 9 1.8107 0.7931 7.4667 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.5816 1.6878 -2.0283 34 1 2.0955 3.1411 -1.1383 35 1 3.6748 3.5158 -4.4442 36 1 2.6229 0.4186 2.5298 37 1 0.9446 1.0113 2.5303 38 1 3.0372 4.2557 4.8141 39 1 2.4041 2.4683 9.3761 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785602341.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:20 Heat of formation + Delta-G solvation = -217.824378 kcal Electronic energy + Delta-G solvation = -29413.899045 eV Core-core repulsion = 24487.102489 eV Total energy + Delta-G solvation = -4926.796556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.08295 -49.53849 -49.10922 -40.84174 -39.28202 -38.67632 -36.54166 -35.37918 -32.89316 -32.18302 -30.79283 -30.23127 -29.20044 -26.69945 -25.02457 -23.89949 -23.12979 -22.66211 -21.53703 -19.15870 -18.80275 -18.72949 -18.09269 -17.37624 -17.16668 -16.88248 -16.72980 -16.44980 -16.18308 -15.94650 -15.74112 -15.50054 -15.26897 -15.10879 -14.86643 -14.60050 -14.38722 -14.02012 -13.54378 -13.43311 -13.03270 -12.95399 -12.66908 -12.33510 -12.32159 -12.15033 -12.10552 -11.69385 -11.28291 -11.00645 -10.96372 -10.90467 -10.70142 -10.58135 -10.18709 -9.91261 -9.70726 -9.29008 -9.09143 -8.48545 -7.82042 -6.09705 -4.14762 -0.33120 0.17950 1.83861 2.08064 2.74470 2.92405 3.16281 3.27493 3.27899 3.34658 3.38988 3.64400 3.66299 3.78666 4.14121 4.37560 4.42382 4.76017 4.77617 4.86656 5.00632 5.07730 5.11038 5.17908 5.25184 5.29809 5.31886 5.53184 5.67818 5.91964 5.94298 6.07506 6.14647 6.40017 6.93079 7.33906 7.35810 7.43911 7.86043 8.15671 8.22462 8.77570 8.93166 9.50497 10.98486 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.002544 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.122276 B =11005.227207 C =12350.394040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.590 5.590 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.051 3.949 16 O -0.321 6.321 17 C 0.510 3.490 18 O -0.488 6.488 19 C -0.142 4.142 20 C -0.034 4.034 21 C 0.050 3.950 22 F -0.115 7.115 23 C 0.135 3.865 24 F -0.112 7.112 25 C -0.179 4.179 26 C 0.189 3.811 27 F -0.099 7.099 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.180 0.820 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.743 -3.158 22.802 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.324 5.324 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.395 6.395 15 C -0.026 4.026 16 O -0.236 6.236 17 C 0.353 3.647 18 O -0.376 6.376 19 C -0.144 4.144 20 C -0.053 4.053 21 C 0.029 3.971 22 F -0.093 7.093 23 C 0.115 3.885 24 F -0.090 7.090 25 C -0.199 4.199 26 C 0.168 3.832 27 F -0.077 7.077 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.198 0.802 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -4.644 -2.742 22.646 23.279 hybrid contribution 0.953 -0.227 -0.216 1.003 sum -3.691 -2.969 22.429 22.924 Atomic orbital electron populations 1.22235 0.96461 1.01765 1.02439 1.21527 0.93805 0.83884 1.03115 1.48213 1.63656 1.13430 1.07096 1.19347 0.96526 0.93715 0.77481 1.21417 0.96824 1.32190 1.06394 0.92375 1.24931 0.97938 0.94808 0.96351 1.69927 1.35763 1.33260 1.14298 0.86483 0.84539 0.77706 0.78620 1.20623 1.21046 1.19852 1.19651 0.79832 0.87158 0.84219 1.90721 1.44565 1.17469 1.86713 1.23074 1.03068 0.92566 0.83910 1.86572 1.78506 1.44796 1.13722 1.20497 0.75409 0.85363 0.83437 1.90926 1.41538 1.18499 1.86681 1.18992 1.09658 0.95196 0.90556 1.21476 0.92301 0.91044 1.00494 1.17433 1.05223 0.82358 0.92047 1.91615 1.86590 1.35233 1.95907 1.17527 0.99268 0.89267 0.82485 1.91608 1.90729 1.73511 1.53142 1.20867 1.05787 0.92438 1.00775 1.17176 0.94385 0.80416 0.91181 1.91672 1.85107 1.35185 1.95705 0.93129 0.91747 0.91839 0.89335 0.91705 0.94581 0.93654 0.92632 0.88266 0.88345 0.80249 0.81236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.10 1.51 5.93 -4.04 -0.02 1.48 16 3 N -0.59 -11.85 2.46 -175.06 -0.43 -12.28 16 4 C 0.25 6.22 5.16 -5.20 -0.03 6.19 16 5 C -0.53 -14.58 9.39 -34.44 -0.32 -14.90 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 9 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.51 10.14 7.75 -10.99 -0.09 10.06 16 14 O -0.52 -12.67 16.08 -14.11 -0.23 -12.89 16 15 C 0.05 0.77 4.51 36.01 0.16 0.93 16 16 O -0.32 -4.84 9.00 -47.32 -0.43 -5.27 16 17 C 0.51 6.76 7.89 34.48 0.27 7.04 16 18 O -0.49 -7.23 15.12 -19.27 -0.29 -7.52 16 19 C -0.14 -1.48 5.88 -104.93 -0.62 -2.10 16 20 C -0.03 -0.32 9.59 -39.12 -0.37 -0.70 16 21 C 0.05 0.45 7.29 -39.44 -0.29 0.16 16 22 F -0.12 -1.18 17.17 2.25 0.04 -1.15 16 23 C 0.14 1.06 7.31 -39.23 -0.29 0.77 16 24 F -0.11 -0.92 17.17 2.25 0.04 -0.89 16 25 C -0.18 -1.20 9.99 -39.52 -0.39 -1.60 16 26 C 0.19 1.71 7.28 -38.96 -0.28 1.43 16 27 F -0.10 -1.05 15.54 2.25 0.04 -1.01 16 28 H 0.05 0.60 7.22 -51.93 -0.38 0.23 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 32 H 0.06 0.80 6.44 -51.93 -0.33 0.47 16 33 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.10 1.33 7.40 -51.93 -0.38 0.95 16 37 H 0.10 1.27 7.18 -51.93 -0.37 0.89 16 38 H 0.18 1.75 7.61 -52.48 -0.40 1.35 16 39 H 0.17 0.69 8.06 -52.49 -0.42 0.26 16 LS Contribution 360.23 15.07 5.43 5.43 Total: -1.00 -33.04 360.23 -6.01 -39.05 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -3.90 Total: -3.29 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -1.99 Total: 8.64 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.31 Total: -37.54 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.94 Total: -25.68 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.11 Total: -3.04 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.04 -6.01 -39.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785602341.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.774 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds