Wall clock time and date at job start Wed Apr 1 2020 03:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47084 * 2 1 4 4 C 1.46495 * 120.00292 * 269.99991 * 3 2 1 5 5 C 1.50699 * 109.47321 * 270.00260 * 4 3 2 6 6 H 1.08001 * 119.99835 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00016 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99642 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99769 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47040 * 90.00373 * 9 7 5 11 11 H 1.48506 * 109.47083 * 209.99737 * 9 7 5 12 12 H 1.48499 * 109.47300 * 329.99953 * 9 7 5 13 13 C 1.34776 * 119.99574 * 90.00231 * 3 2 1 14 14 O 1.21288 * 119.99779 * 179.97438 * 13 3 2 15 15 C 1.50701 * 120.00296 * 0.02562 * 13 3 2 16 16 O 1.45196 * 109.47134 * 179.97438 * 15 13 3 17 17 C 1.34753 * 117.00079 * 179.97438 * 16 15 13 18 18 O 1.21503 * 119.99808 * 359.97438 * 17 16 15 19 19 C 1.47439 * 120.00027 * 180.02562 * 17 16 15 20 20 C 1.39816 * 120.14008 * 359.97438 * 19 17 16 21 21 C 1.37887 * 119.87290 * 180.02562 * 20 19 17 22 22 F 1.35102 * 119.92395 * 179.97438 * 21 20 19 23 23 C 1.38962 * 120.15120 * 359.74337 * 21 20 19 24 24 F 1.35102 * 119.85941 * 180.27602 * 23 21 20 25 25 C 1.38450 * 120.28012 * 0.51508 * 23 21 20 26 26 C 1.38200 * 120.12415 * 359.48215 * 25 23 21 27 27 F 1.35103 * 120.07898 * 180.28071 * 26 25 23 28 28 H 1.09001 * 109.47133 * 299.99829 * 1 2 3 29 29 H 1.09004 * 109.47358 * 59.99306 * 1 2 3 30 30 H 1.08998 * 109.47684 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46693 * 240.00327 * 2 1 3 32 32 H 1.08999 * 109.46917 * 120.00537 * 2 1 3 33 33 H 1.09005 * 109.46839 * 30.00505 * 4 3 2 34 34 H 1.09000 * 109.47153 * 150.00035 * 4 3 2 35 35 H 0.97001 * 119.99418 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.46997 * 59.99978 * 15 13 3 37 37 H 1.08996 * 109.46796 * 299.99644 * 15 13 3 38 38 H 1.08005 * 120.06062 * 359.97438 * 20 19 17 39 39 H 1.08002 * 119.94182 * 179.76877 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2309 -1.0958 7 6 4.1490 2.3898 -2.8780 8 7 3.3490 3.1259 -3.6180 9 14 5.9134 2.0968 -3.4169 10 1 5.9774 0.8755 -4.2592 11 1 6.3920 3.2640 -4.2004 12 1 6.7735 1.9180 -2.2196 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9924 1.3058 2.4723 16 8 2.3074 2.1952 3.5760 17 6 2.1358 1.7095 4.8212 18 8 1.7334 0.5741 4.9803 19 6 2.4351 2.5563 5.9904 20 6 2.8977 3.8634 5.8107 21 6 3.1764 4.6503 6.9081 22 9 3.6240 5.9134 6.7356 23 6 2.9935 4.1489 8.1911 24 9 3.2631 4.9269 9.2622 25 6 2.5408 2.8537 8.3765 26 6 2.2578 2.0549 7.2847 27 9 1.8107 0.7931 7.4667 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.5816 1.6878 -2.0283 34 1 2.0955 3.1411 -1.1383 35 1 3.6748 3.5158 -4.4442 36 1 2.6229 0.4186 2.5298 37 1 0.9446 1.0113 2.5303 38 1 3.0372 4.2557 4.8141 39 1 2.4041 2.4683 9.3761 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785602341.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:19 Heat of formation + Delta-G solvation = -236.026510 kcal Electronic energy + Delta-G solvation = -29414.688349 eV Core-core repulsion = 24487.102489 eV Total energy + Delta-G solvation = -4927.585859 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.78666 -50.29893 -49.84023 -41.92897 -40.67208 -39.61343 -37.70478 -36.97786 -34.93572 -32.95356 -31.73982 -31.52035 -30.57534 -28.44499 -25.94951 -24.94121 -24.52888 -24.05144 -22.52107 -20.36936 -19.89148 -19.49547 -19.00674 -18.62916 -18.34069 -18.06292 -17.91491 -17.61185 -17.47485 -17.09720 -16.75097 -16.48874 -16.24646 -16.16009 -15.90649 -15.80558 -15.50706 -14.99869 -14.77839 -14.70523 -14.51095 -13.98224 -13.83949 -13.69444 -13.60187 -13.27790 -13.08029 -13.04697 -13.00359 -12.68212 -12.50366 -12.23770 -12.08277 -11.96277 -11.81623 -11.71900 -10.74345 -10.63885 -10.58345 -10.02630 -9.54295 -8.23023 -6.37290 -1.09191 -0.49582 0.95944 1.00471 1.37648 1.40482 1.50405 1.61575 1.94043 2.19452 2.29139 2.42102 2.56733 2.96053 3.02285 3.07454 3.27857 3.40499 3.63216 3.87150 3.96156 4.08032 4.15902 4.18383 4.34443 4.39007 4.52478 4.58856 4.60130 4.86629 4.95761 5.01869 5.04852 5.21020 5.24513 5.37464 5.54421 5.79577 6.04434 6.31604 6.61422 6.72214 7.21009 7.36733 8.84393 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.002544 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.122276 B =11005.227207 C =12350.394040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.264 1.264 11 H -0.282 1.282 12 H -0.273 1.273 13 C 0.500 3.500 14 O -0.576 6.576 15 C 0.063 3.937 16 O -0.338 6.338 17 C 0.513 3.487 18 O -0.504 6.504 19 C -0.153 4.153 20 C -0.033 4.033 21 C 0.045 3.955 22 F -0.125 7.125 23 C 0.146 3.854 24 F -0.110 7.110 25 C -0.152 4.152 26 C 0.190 3.810 27 F -0.106 7.106 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.029 0.971 34 H 0.001 0.999 35 H 0.267 0.733 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.171 0.829 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.489 -4.959 24.979 25.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.029 4.029 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.189 1.189 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.287 3.713 14 O -0.455 6.455 15 C -0.014 4.014 16 O -0.253 6.253 17 C 0.358 3.642 18 O -0.394 6.394 19 C -0.156 4.156 20 C -0.052 4.052 21 C 0.025 3.975 22 F -0.103 7.103 23 C 0.126 3.874 24 F -0.088 7.088 25 C -0.171 4.171 26 C 0.170 3.830 27 F -0.084 7.084 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.047 0.953 34 H 0.019 0.981 35 H 0.076 0.924 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.188 0.812 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -4.414 -4.592 24.841 25.644 hybrid contribution 0.837 0.358 -0.826 1.229 sum -3.577 -4.234 24.015 24.646 Atomic orbital electron populations 1.22181 0.94336 1.03783 1.01880 1.21877 0.95544 0.80960 1.04486 1.48197 1.63551 1.15263 1.05668 1.18791 0.95540 0.91721 0.79761 1.21706 0.97837 1.32158 1.06586 0.92677 1.25831 1.02300 0.94431 0.96446 1.70045 1.37778 1.34111 1.14772 0.85426 0.79085 0.78148 0.78221 1.18861 1.20752 1.19743 1.20490 0.78418 0.86670 0.85754 1.90686 1.47057 1.20066 1.87719 1.22928 1.05170 0.91924 0.81358 1.86573 1.78939 1.45317 1.14493 1.20839 0.74704 0.85468 0.83169 1.90909 1.42562 1.19190 1.86704 1.18878 1.11281 0.95227 0.90171 1.21291 0.92584 0.90902 1.00389 1.17483 1.05552 0.81953 0.92539 1.91592 1.86803 1.35908 1.96023 1.17499 0.98587 0.89504 0.81845 1.91622 1.90637 1.73603 1.52966 1.21063 1.03341 0.91162 1.01534 1.17233 0.94426 0.80299 0.91068 1.91658 1.85270 1.35791 1.95694 0.92280 0.93762 0.88445 0.90057 0.88223 0.95286 0.98117 0.92377 0.85983 0.85550 0.81175 0.77809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 10.24 71.98 0.74 -3.06 16 2 C 0.09 2.66 5.93 86.38 0.51 3.17 16 3 N -0.59 -24.21 2.46 -826.16 -2.03 -26.24 16 4 C 0.26 13.79 5.16 85.63 0.44 14.23 16 5 C -0.54 -30.74 9.39 25.60 0.24 -30.50 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.52 5.46 84.66 0.46 0.98 16 8 N -0.93 -55.36 13.29 21.45 0.28 -55.07 16 9 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 10 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 13 C 0.50 20.31 7.75 87.66 0.68 20.99 16 14 O -0.58 -29.45 16.08 15.74 0.25 -29.19 16 15 C 0.06 1.80 4.51 71.24 0.32 2.12 16 16 O -0.34 -10.07 9.00 -50.24 -0.45 -10.52 16 17 C 0.51 13.12 7.89 70.25 0.55 13.67 16 18 O -0.50 -14.08 15.12 19.83 0.30 -13.78 16 19 C -0.15 -3.05 5.88 -20.06 -0.12 -3.16 16 20 C -0.03 -0.61 9.59 22.57 0.22 -0.39 16 21 C 0.05 0.77 7.29 22.36 0.16 0.93 16 22 F -0.12 -2.52 17.17 44.97 0.77 -1.74 16 23 C 0.15 1.94 7.31 22.49 0.16 2.11 16 24 F -0.11 -1.54 17.17 44.97 0.77 -0.77 16 25 C -0.15 -1.55 9.99 22.31 0.22 -1.33 16 26 C 0.19 3.03 7.28 22.67 0.17 3.19 16 27 F -0.11 -2.01 15.54 44.97 0.70 -1.32 16 28 H 0.06 1.27 7.22 -2.39 -0.02 1.25 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 2.45 8.07 -2.39 -0.02 2.43 16 32 H 0.10 2.16 6.44 -2.39 -0.02 2.15 16 33 H 0.03 1.54 8.07 -2.38 -0.02 1.52 16 34 H 0.00 0.04 7.42 -2.39 -0.02 0.03 16 35 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 36 H 0.12 2.98 7.40 -2.39 -0.02 2.96 16 37 H 0.13 2.94 7.18 -2.39 -0.02 2.92 16 38 H 0.17 3.48 7.61 -2.91 -0.02 3.46 16 39 H 0.20 0.71 8.06 -2.91 -0.02 0.68 16 Total: -1.00 -74.69 360.23 8.51 -66.18 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: 1.12 Total: 3.15 kcal Atomic # 6 Polarization: 18.19 SS G_CDS: 4.76 Total: 22.96 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -1.74 Total: -81.31 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: 0.10 Total: -53.49 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 2.24 Total: -3.83 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -74.69 8.51 -66.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785602341.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.847 kcal (2) G-P(sol) polarization free energy of solvation -74.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds