Wall clock time and date at job start Wed Apr 1 2020 03:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47716 * 2 1 4 4 C 1.50702 * 109.47534 * 239.99605 * 2 1 3 5 5 O 1.20826 * 120.00303 * 240.00372 * 4 2 1 6 6 O 1.34228 * 119.99603 * 60.00095 * 4 2 1 7 7 C 1.45206 * 117.00001 * 180.02562 * 6 4 2 8 8 C 1.50703 * 109.47147 * 180.02562 * 7 6 4 9 9 O 1.21296 * 119.99996 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99773 * 179.97438 * 8 7 6 11 11 C 1.37099 * 119.99644 * 180.02562 * 10 8 7 12 12 H 1.07998 * 120.00405 * 359.97438 * 11 10 8 13 13 C 1.38956 * 119.99908 * 180.02562 * 11 10 8 14 14 N 1.31411 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86790 * 120.00116 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47279 * 59.99899 * 15 13 11 17 17 H 1.48496 * 109.47389 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47348 * 299.99946 * 15 13 11 19 19 C 1.50704 * 109.47246 * 120.00137 * 2 1 3 20 20 C 1.38239 * 120.00104 * 59.72255 * 19 2 1 21 21 C 1.38233 * 120.00083 * 179.77106 * 20 19 2 22 22 C 1.38243 * 119.99730 * 0.51018 * 21 20 19 23 23 C 1.50698 * 119.99709 * 179.72729 * 22 21 20 24 24 F 1.39902 * 109.46971 * 270.01779 * 23 22 21 25 25 F 1.39899 * 109.47659 * 30.01582 * 23 22 21 26 26 F 1.39899 * 109.47038 * 150.02103 * 23 22 21 27 27 C 1.38236 * 119.99912 * 359.74220 * 22 21 20 28 28 C 1.38234 * 119.99819 * 240.00640 * 19 2 1 29 29 H 1.09001 * 109.47443 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47242 * 300.00500 * 1 2 3 31 31 H 1.08999 * 109.46749 * 60.00417 * 1 2 3 32 32 H 1.09001 * 109.47157 * 299.99890 * 7 6 4 33 33 H 1.09004 * 109.47122 * 60.00023 * 7 6 4 34 34 H 0.96998 * 120.00166 * 0.02562 * 10 8 7 35 35 H 0.96996 * 120.00275 * 179.97438 * 14 13 11 36 36 H 1.08001 * 119.99671 * 359.97438 * 20 19 2 37 37 H 1.07992 * 120.00120 * 180.23185 * 21 20 19 38 38 H 1.07997 * 119.99408 * 179.97438 * 27 22 21 39 39 H 1.07997 * 120.00420 * 359.97438 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7270 -1.6929 -1.1195 6 8 1.7081 -0.2519 -2.4495 7 6 2.2269 -0.9865 -3.5896 8 6 1.7630 -0.3292 -4.8640 9 8 1.0636 0.6606 -4.8161 10 7 2.1254 -0.8413 -6.0568 11 6 1.7038 -0.2430 -7.2161 12 1 1.0811 0.6383 -7.1735 13 6 2.0769 -0.7713 -8.4460 14 7 2.8342 -1.8440 -8.4979 15 14 1.5020 0.0433 -10.0255 16 1 1.9987 1.4421 -10.0703 17 1 2.0320 -0.7082 -11.1915 18 1 0.0176 0.0435 -10.0706 19 6 2.0323 -0.7105 1.2305 20 6 1.6937 -2.0323 1.4521 21 6 2.1584 -2.6853 2.5784 22 6 2.9531 -2.0134 3.4884 23 6 3.4546 -2.7236 4.7193 24 9 2.5325 -2.5622 5.7590 25 9 3.6099 -4.0858 4.4411 26 9 4.6869 -2.1820 5.1006 27 6 3.2874 -0.6901 3.2693 28 6 2.8269 -0.0386 2.1404 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.3164 -0.9862 -3.5568 33 1 1.8626 -2.0133 -3.5565 34 1 2.6844 -1.6331 -6.0951 35 1 3.0944 -2.2130 -9.3564 36 1 1.0687 -2.5556 0.7437 37 1 1.8969 -3.7190 2.7496 38 1 3.9079 -0.1652 3.9805 39 1 3.0881 0.9953 1.9694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798785428.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:10 Heat of formation + Delta-G solvation = -252.213085 kcal Electronic energy + Delta-G solvation = -28850.448848 eV Core-core repulsion = 23922.161086 eV Total energy + Delta-G solvation = -4928.287762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.46797 -47.98118 -47.93362 -40.89252 -39.59409 -38.16914 -36.25398 -34.89057 -34.03768 -31.53248 -31.42597 -30.93537 -28.43724 -26.44533 -25.05870 -24.23307 -23.34868 -22.23772 -20.32989 -19.62615 -18.83963 -18.77939 -18.70145 -18.11736 -17.56295 -16.78137 -16.52712 -15.78939 -15.66136 -15.23482 -15.12925 -14.79684 -14.69229 -14.54775 -14.39592 -14.27347 -14.15377 -14.08840 -14.00789 -13.77705 -13.47234 -13.26406 -13.20044 -12.65055 -12.41863 -12.26684 -12.02620 -11.90755 -11.65043 -11.51891 -11.37384 -11.13950 -10.51712 -10.47667 -10.40667 -10.30464 -9.62910 -9.44924 -9.38441 -8.56522 -8.11931 -6.53095 -3.95406 0.48985 0.92520 2.19442 2.33636 2.56006 3.12895 3.17264 3.20869 3.25819 3.38794 3.69737 3.70008 4.07018 4.09067 4.11043 4.33518 4.47041 4.59259 4.74698 4.83442 4.94326 5.01465 5.05684 5.11591 5.26537 5.40751 5.51309 5.52831 5.56176 5.64367 5.75402 5.79230 5.93824 6.01399 6.09356 6.35760 6.55174 7.44443 7.75133 7.91451 8.44672 9.03530 9.35547 9.85216 10.63958 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.028948 B = 0.001797 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.034666 B =15580.260315 C =16064.778527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.046 4.046 3 H 0.122 0.878 4 C 0.461 3.539 5 O -0.505 6.505 6 O -0.321 6.321 7 C 0.061 3.939 8 C 0.437 3.563 9 O -0.576 6.576 10 N -0.552 5.552 11 C -0.304 4.304 12 H 0.106 0.894 13 C 0.025 3.975 14 N -0.897 5.897 15 Si 0.935 3.065 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.040 4.040 20 C -0.086 4.086 21 C -0.070 4.070 22 C -0.184 4.184 23 C 0.509 3.491 24 F -0.178 7.178 25 F -0.177 7.177 26 F -0.178 7.178 27 C -0.072 4.072 28 C -0.108 4.108 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.395 0.605 35 H 0.275 0.725 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.104 -0.842 25.258 25.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.065 4.065 3 H 0.140 0.860 4 C 0.303 3.697 5 O -0.393 6.393 6 O -0.236 6.236 7 C -0.017 4.017 8 C 0.222 3.778 9 O -0.461 6.461 10 N -0.189 5.189 11 C -0.433 4.433 12 H 0.124 0.876 13 C -0.178 4.178 14 N -0.537 5.537 15 Si 0.762 3.238 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.040 4.040 20 C -0.104 4.104 21 C -0.088 4.088 22 C -0.185 4.185 23 C 0.455 3.545 24 F -0.159 7.159 25 F -0.158 7.158 26 F -0.159 7.159 27 C -0.090 4.090 28 C -0.126 4.126 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.228 0.772 35 H 0.085 0.915 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.275 -0.608 25.136 25.145 hybrid contribution 0.469 -0.524 -0.701 0.993 sum 0.194 -1.132 24.435 24.462 Atomic orbital electron populations 1.21833 0.90383 1.03570 1.04351 1.19995 0.99013 1.00516 0.87007 0.85986 1.23428 0.77873 0.83078 0.85326 1.90688 1.35435 1.25788 1.87418 1.86536 1.68623 1.54553 1.13843 1.22774 0.99594 0.95602 0.83720 1.19302 0.86898 0.87699 0.83892 1.90561 1.41434 1.27473 1.86599 1.41704 1.45689 1.27561 1.03938 1.19676 1.29988 1.11466 0.82137 0.87641 1.25324 0.96519 0.96212 0.99702 1.69602 1.35433 1.21329 1.27342 0.85846 0.79108 0.79018 0.79852 1.19734 1.20863 1.19739 1.19628 0.95817 0.94285 0.94312 1.20975 0.99232 0.93805 0.96379 1.20902 0.94876 1.00104 0.92931 1.19970 1.05850 0.96533 0.96164 1.18317 0.75337 0.77019 0.83835 1.93225 1.66344 1.95321 1.61031 1.93198 1.95509 1.33473 1.93633 1.93190 1.44626 1.85722 1.92369 1.20866 0.97928 0.92540 0.97681 1.21028 0.97273 1.00616 0.93716 0.91725 0.90707 0.89703 0.89539 0.89528 0.77152 0.91533 0.84813 0.84563 0.84534 0.84431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.93 37.15 0.33 -0.91 16 2 C -0.05 -0.46 3.01 -92.92 -0.28 -0.74 16 3 H 0.12 0.99 7.88 -51.93 -0.41 0.58 16 4 C 0.46 6.58 7.13 36.01 0.26 6.84 16 5 O -0.51 -8.15 14.88 -18.75 -0.28 -8.43 16 6 O -0.32 -5.56 9.66 -45.90 -0.44 -6.00 16 7 C 0.06 1.11 5.94 36.01 0.21 1.32 16 8 C 0.44 10.26 7.86 -10.98 -0.09 10.17 16 9 O -0.58 -15.58 16.08 -14.11 -0.23 -15.80 16 10 N -0.55 -13.69 5.29 -10.96 -0.06 -13.75 16 11 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 12 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 13 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 14 N -0.90 -23.76 13.05 55.50 0.72 -23.04 16 15 Si 0.94 20.42 29.55 -169.99 -5.02 15.39 16 16 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 19 C -0.04 -0.39 4.39 -104.62 -0.46 -0.85 16 20 C -0.09 -0.85 7.94 -39.58 -0.31 -1.16 16 21 C -0.07 -0.65 9.40 -39.58 -0.37 -1.02 16 22 C -0.18 -1.69 5.45 -104.62 -0.57 -2.26 16 23 C 0.51 4.70 3.36 36.00 0.12 4.82 16 24 F -0.18 -1.67 17.30 2.25 0.04 -1.63 16 25 F -0.18 -1.74 16.46 2.25 0.04 -1.70 16 26 F -0.18 -1.68 16.46 2.25 0.04 -1.64 16 27 C -0.07 -0.59 9.40 -39.58 -0.37 -0.97 16 28 C -0.11 -0.89 9.67 -39.58 -0.38 -1.27 16 29 H 0.06 0.54 7.37 -51.93 -0.38 0.16 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 32 H 0.09 1.45 8.13 -51.93 -0.42 1.03 16 33 H 0.09 1.44 8.13 -51.93 -0.42 1.01 16 34 H 0.39 9.30 7.90 -40.82 -0.32 8.97 16 35 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.13 1.27 7.52 -52.49 -0.39 0.87 16 37 H 0.14 1.05 7.60 -52.49 -0.40 0.65 16 38 H 0.14 0.86 7.60 -52.49 -0.40 0.47 16 39 H 0.14 0.79 7.95 -52.49 -0.42 0.38 16 LS Contribution 359.54 15.07 5.42 5.42 Total: -1.00 -32.06 359.54 -5.85 -37.91 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -3.92 Total: 7.13 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -2.15 Total: 6.15 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.67 Total: -36.78 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.95 Total: -30.24 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.11 Total: -4.98 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.06 -5.85 -37.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798785428.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -214.305 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds