Wall clock time and date at job start Wed Apr 1 2020 03:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47716 * 2 1 4 4 C 1.50702 * 109.47534 * 239.99605 * 2 1 3 5 5 O 1.20826 * 120.00303 * 240.00372 * 4 2 1 6 6 O 1.34228 * 119.99603 * 60.00095 * 4 2 1 7 7 C 1.45206 * 117.00001 * 180.02562 * 6 4 2 8 8 C 1.50703 * 109.47147 * 180.02562 * 7 6 4 9 9 O 1.21296 * 119.99996 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99773 * 179.97438 * 8 7 6 11 11 C 1.37099 * 119.99644 * 180.02562 * 10 8 7 12 12 H 1.07998 * 120.00405 * 359.97438 * 11 10 8 13 13 C 1.38956 * 119.99908 * 180.02562 * 11 10 8 14 14 N 1.31411 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86790 * 120.00116 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47279 * 59.99899 * 15 13 11 17 17 H 1.48496 * 109.47389 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47348 * 299.99946 * 15 13 11 19 19 C 1.50704 * 109.47246 * 120.00137 * 2 1 3 20 20 C 1.38239 * 120.00104 * 59.72255 * 19 2 1 21 21 C 1.38233 * 120.00083 * 179.77106 * 20 19 2 22 22 C 1.38243 * 119.99730 * 0.51018 * 21 20 19 23 23 C 1.50698 * 119.99709 * 179.72729 * 22 21 20 24 24 F 1.39902 * 109.46971 * 270.01779 * 23 22 21 25 25 F 1.39899 * 109.47659 * 30.01582 * 23 22 21 26 26 F 1.39899 * 109.47038 * 150.02103 * 23 22 21 27 27 C 1.38236 * 119.99912 * 359.74220 * 22 21 20 28 28 C 1.38234 * 119.99819 * 240.00640 * 19 2 1 29 29 H 1.09001 * 109.47443 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47242 * 300.00500 * 1 2 3 31 31 H 1.08999 * 109.46749 * 60.00417 * 1 2 3 32 32 H 1.09001 * 109.47157 * 299.99890 * 7 6 4 33 33 H 1.09004 * 109.47122 * 60.00023 * 7 6 4 34 34 H 0.96998 * 120.00166 * 0.02562 * 10 8 7 35 35 H 0.96996 * 120.00275 * 179.97438 * 14 13 11 36 36 H 1.08001 * 119.99671 * 359.97438 * 20 19 2 37 37 H 1.07992 * 120.00120 * 180.23185 * 21 20 19 38 38 H 1.07997 * 119.99408 * 179.97438 * 27 22 21 39 39 H 1.07997 * 120.00420 * 359.97438 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7270 -1.6929 -1.1195 6 8 1.7081 -0.2519 -2.4495 7 6 2.2269 -0.9865 -3.5896 8 6 1.7630 -0.3292 -4.8640 9 8 1.0636 0.6606 -4.8161 10 7 2.1254 -0.8413 -6.0568 11 6 1.7038 -0.2430 -7.2161 12 1 1.0811 0.6383 -7.1735 13 6 2.0769 -0.7713 -8.4460 14 7 2.8342 -1.8440 -8.4979 15 14 1.5020 0.0433 -10.0255 16 1 1.9987 1.4421 -10.0703 17 1 2.0320 -0.7082 -11.1915 18 1 0.0176 0.0435 -10.0706 19 6 2.0323 -0.7105 1.2305 20 6 1.6937 -2.0323 1.4521 21 6 2.1584 -2.6853 2.5784 22 6 2.9531 -2.0134 3.4884 23 6 3.4546 -2.7236 4.7193 24 9 2.5325 -2.5622 5.7590 25 9 3.6099 -4.0858 4.4411 26 9 4.6869 -2.1820 5.1006 27 6 3.2874 -0.6901 3.2693 28 6 2.8269 -0.0386 2.1404 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.3164 -0.9862 -3.5568 33 1 1.8626 -2.0133 -3.5565 34 1 2.6844 -1.6331 -6.0951 35 1 3.0944 -2.2130 -9.3564 36 1 1.0687 -2.5556 0.7437 37 1 1.8969 -3.7190 2.7496 38 1 3.9079 -0.1652 3.9805 39 1 3.0881 0.9953 1.9694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798785428.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:09 Heat of formation + Delta-G solvation = -269.582120 kcal Electronic energy + Delta-G solvation = -28851.202025 eV Core-core repulsion = 23922.161086 eV Total energy + Delta-G solvation = -4929.040940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.20235 -48.72299 -48.66747 -41.97004 -40.54812 -39.90236 -37.56180 -36.03093 -35.70476 -33.41802 -32.17910 -31.69877 -29.98903 -27.15167 -26.74394 -25.34368 -24.02919 -23.11060 -21.45727 -21.28035 -20.07687 -19.55235 -19.49223 -19.44848 -18.71674 -18.07661 -17.77570 -17.25343 -16.71280 -16.51793 -16.04312 -15.85392 -15.72824 -15.64524 -15.50851 -15.37440 -15.12921 -14.91972 -14.82985 -14.72166 -14.53670 -14.22259 -14.03296 -13.87087 -13.76324 -13.55242 -13.17750 -13.07055 -12.92966 -12.67467 -12.48838 -12.22984 -12.13174 -12.08051 -11.85367 -11.56778 -11.47113 -10.51355 -10.13849 -10.12212 -10.05088 -8.52425 -6.03158 -0.21414 0.27364 1.07377 1.35601 1.37824 1.45405 1.56092 1.62417 1.87200 2.28576 2.45669 2.67987 2.98746 3.04834 3.13136 3.33179 3.39184 3.60764 3.79017 3.86083 4.02667 4.05962 4.14620 4.17837 4.21763 4.31603 4.40729 4.61301 4.80604 4.84070 4.92344 5.09536 5.13322 5.23362 5.33244 5.37047 5.41494 5.71758 5.88694 6.45013 6.61959 7.02588 7.39753 7.92903 8.64272 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.028948 B = 0.001797 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.034666 B =15580.260315 C =16064.778527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.038 4.038 3 H 0.146 0.854 4 C 0.461 3.539 5 O -0.525 6.525 6 O -0.338 6.338 7 C 0.072 3.928 8 C 0.437 3.563 9 O -0.616 6.616 10 N -0.559 5.559 11 C -0.338 4.338 12 H 0.086 0.914 13 C -0.010 4.010 14 N -0.916 5.916 15 Si 0.998 3.002 16 H -0.269 1.269 17 H -0.271 1.271 18 H -0.269 1.269 19 C -0.051 4.051 20 C -0.099 4.099 21 C -0.078 4.078 22 C -0.192 4.192 23 C 0.512 3.488 24 F -0.179 7.179 25 F -0.182 7.182 26 F -0.179 7.179 27 C -0.073 4.073 28 C -0.105 4.105 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.399 0.601 35 H 0.281 0.719 36 H 0.130 0.870 37 H 0.144 0.856 38 H 0.157 0.843 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.169 -0.289 26.038 26.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.057 4.057 3 H 0.164 0.836 4 C 0.305 3.695 5 O -0.414 6.414 6 O -0.253 6.253 7 C -0.006 4.006 8 C 0.223 3.777 9 O -0.503 6.503 10 N -0.196 5.196 11 C -0.467 4.467 12 H 0.103 0.897 13 C -0.211 4.211 14 N -0.556 5.556 15 Si 0.821 3.179 16 H -0.194 1.194 17 H -0.195 1.195 18 H -0.194 1.194 19 C -0.051 4.051 20 C -0.117 4.117 21 C -0.096 4.096 22 C -0.193 4.193 23 C 0.458 3.542 24 F -0.161 7.161 25 F -0.163 7.163 26 F -0.160 7.160 27 C -0.091 4.091 28 C -0.122 4.122 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.234 0.766 35 H 0.090 0.910 36 H 0.148 0.852 37 H 0.162 0.838 38 H 0.174 0.826 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.013 -0.079 25.938 25.938 hybrid contribution 0.403 -0.724 -0.842 1.182 sum 0.416 -0.804 25.095 25.112 Atomic orbital electron populations 1.21841 0.89424 1.03705 1.04879 1.20133 0.99703 1.01114 0.84759 0.83605 1.24307 0.77167 0.82942 0.85133 1.90678 1.36447 1.26803 1.87429 1.86549 1.69176 1.55005 1.14602 1.22498 1.00402 0.95633 0.82035 1.20106 0.85515 0.86951 0.85085 1.90526 1.43014 1.29277 1.87475 1.41754 1.45966 1.27760 1.04140 1.19688 1.31360 1.11921 0.83725 0.89652 1.26139 0.96120 0.96556 1.02248 1.69665 1.35570 1.21904 1.28430 0.84909 0.78676 0.78181 0.76123 1.19440 1.19521 1.19445 1.19687 0.96626 0.94326 0.94486 1.21053 0.99687 0.94285 0.96652 1.21026 0.95032 1.00654 0.92905 1.20084 1.06052 0.97138 0.96051 1.18320 0.75240 0.76780 0.83880 1.93221 1.66389 1.95304 1.61144 1.93187 1.95537 1.33950 1.93670 1.93186 1.44708 1.85697 1.92397 1.21158 0.97732 0.92190 0.98055 1.21332 0.96096 1.01802 0.92987 0.91882 0.88118 0.91130 0.87795 0.87709 0.76621 0.90982 0.85179 0.83778 0.82584 0.81711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.93 71.98 0.64 -1.58 16 2 C -0.04 -0.69 3.01 -12.29 -0.04 -0.73 16 3 H 0.15 1.94 7.88 -2.39 -0.02 1.92 16 4 C 0.46 12.64 7.13 71.24 0.51 13.15 16 5 O -0.52 -16.41 14.88 21.96 0.33 -16.08 16 6 O -0.34 -11.50 9.66 -45.04 -0.43 -11.94 16 7 C 0.07 2.58 5.94 71.24 0.42 3.01 16 8 C 0.44 20.75 7.86 87.66 0.69 21.44 16 9 O -0.62 -34.02 16.08 15.72 0.25 -33.77 16 10 N -0.56 -28.17 5.29 -306.98 -1.62 -29.79 16 11 C -0.34 -18.67 9.68 84.04 0.81 -17.86 16 12 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 13 C -0.01 -0.51 5.50 84.93 0.47 -0.05 16 14 N -0.92 -48.19 13.05 21.66 0.28 -47.91 16 15 Si 1.00 41.46 29.55 68.60 2.03 43.48 16 16 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 17 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 18 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 19 C -0.05 -0.88 4.39 -19.86 -0.09 -0.97 16 20 C -0.10 -1.84 7.94 22.27 0.18 -1.66 16 21 C -0.08 -1.37 9.40 22.27 0.21 -1.16 16 22 C -0.19 -3.25 5.45 -19.86 -0.11 -3.36 16 23 C 0.51 8.84 3.36 71.24 0.24 9.08 16 24 F -0.18 -3.16 17.30 44.97 0.78 -2.39 16 25 F -0.18 -3.44 16.46 44.97 0.74 -2.70 16 26 F -0.18 -3.11 16.46 44.97 0.74 -2.37 16 27 C -0.07 -1.03 9.40 22.27 0.21 -0.83 16 28 C -0.10 -1.42 9.67 22.27 0.22 -1.20 16 29 H 0.06 1.00 7.37 -2.39 -0.02 0.98 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.33 8.11 -2.39 -0.02 1.31 16 32 H 0.10 3.39 8.13 -2.39 -0.02 3.37 16 33 H 0.10 3.40 8.13 -2.38 -0.02 3.38 16 34 H 0.40 19.02 7.90 -92.71 -0.73 18.29 16 35 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 36 H 0.13 2.43 7.52 -2.91 -0.02 2.40 16 37 H 0.14 2.15 7.60 -2.91 -0.02 2.13 16 38 H 0.16 1.53 7.60 -2.91 -0.02 1.51 16 39 H 0.17 1.27 7.95 -2.91 -0.02 1.24 16 Total: -1.00 -68.97 359.54 7.85 -61.12 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.39 Total: 25.05 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: 4.36 Total: 17.28 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -1.34 Total: -77.70 kcal Atomic # 8 Polarization: -61.93 SS G_CDS: 0.14 Total: -61.79 kcal Atomic # 9 Polarization: -9.72 SS G_CDS: 2.26 Total: -7.46 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Total: -68.97 7.85 -61.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798785428.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.463 kcal (2) G-P(sol) polarization free energy of solvation -68.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -269.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds