Wall clock time and date at job start Wed Apr 1 2020 03:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20817 * 119.99946 * 2 1 4 4 C 1.47760 * 119.99802 * 179.97438 * 2 1 3 5 5 C 1.42450 * 126.96561 * 180.27821 * 4 2 1 6 6 C 1.35270 * 103.91327 * 180.13616 * 5 4 2 7 7 C 1.50696 * 126.64094 * 179.87293 * 6 5 4 8 8 O 1.45203 * 109.47037 * 89.71604 * 7 6 5 9 9 C 1.34230 * 117.00479 * 180.02562 * 8 7 6 10 10 O 1.20823 * 119.99459 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.00327 * 179.97438 * 9 8 7 12 12 C 1.50699 * 109.47151 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96224 * 270.02423 * 12 11 9 14 14 C 1.38281 * 120.13505 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96539 * 89.99818 * 12 11 9 27 27 O 1.34018 * 106.71909 * 359.61633 * 6 5 4 28 28 N 1.20908 * 111.89934 * 0.26412 * 27 6 5 29 29 H 1.09004 * 109.47702 * 240.00499 * 1 2 3 30 30 H 1.09002 * 109.47367 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.47150 * 120.00399 * 1 2 3 32 32 H 1.08001 * 128.03789 * 0.02562 * 5 4 2 33 33 H 1.09001 * 109.47454 * 329.71780 * 7 6 5 34 34 H 1.08993 * 109.47450 * 209.71496 * 7 6 5 35 35 H 1.09004 * 109.46756 * 59.99766 * 11 9 8 36 36 H 1.08998 * 109.46908 * 300.00408 * 11 9 8 37 37 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 38 38 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 39 39 H 1.08006 * 120.03715 * 180.31908 * 15 14 13 40 40 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 41 41 H 1.07996 * 120.03547 * 0.04988 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0463 0.0000 4 6 2.2457 -1.2797 0.0006 5 6 3.6597 -1.4525 0.0062 6 6 3.8233 -2.7952 0.0011 7 6 5.1324 -3.5418 0.0010 8 8 5.5530 -3.7812 1.3700 9 6 6.7093 -4.4399 1.5460 10 8 7.3489 -4.8039 0.5878 11 6 7.2101 -4.7243 2.9386 12 6 8.5180 -5.4689 2.8597 13 6 8.5247 -6.8516 2.8236 14 6 9.7226 -7.5384 2.7507 15 6 10.9163 -6.8449 2.7072 16 6 10.9132 -5.4570 2.7491 17 8 12.0851 -4.7728 2.7126 18 6 13.2199 -5.4995 2.7576 19 1 13.1715 -6.5782 2.7377 20 6 14.4491 -4.8618 2.8295 21 7 14.5080 -3.5479 2.8543 22 14 16.0212 -5.8687 2.8927 23 1 15.6850 -7.3146 2.8523 24 1 16.8751 -5.5268 1.7269 25 1 16.7534 -5.5652 4.1486 26 6 9.7082 -4.7700 2.8231 27 8 2.5958 -3.3332 0.0018 28 7 1.7325 -2.4867 0.0015 29 1 -0.3635 -0.5138 0.8900 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 4.4234 -0.6889 0.0113 33 1 5.8888 -2.9488 -0.5130 34 1 5.0071 -4.4949 -0.5125 35 1 6.4777 -5.3310 3.4712 36 1 7.3589 -3.7845 3.4702 37 1 7.5923 -7.3960 2.8523 38 1 9.7246 -8.6180 2.7230 39 1 11.8515 -7.3817 2.6451 40 1 15.3679 -3.1019 2.9050 41 1 9.7023 -3.6905 2.8518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813137003.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:01 Heat of formation + Delta-G solvation = -54.239111 kcal Electronic energy + Delta-G solvation = -27624.564868 eV Core-core repulsion = 23246.718642 eV Total energy + Delta-G solvation = -4377.846226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.114 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.61474 -40.65020 -39.89245 -39.03117 -37.12216 -36.29925 -34.63118 -33.43650 -32.48496 -32.10395 -30.67281 -29.33942 -28.27354 -26.87985 -25.28423 -25.00930 -23.27367 -22.12034 -21.60561 -20.44663 -19.84842 -18.41269 -18.25050 -17.69451 -17.61406 -17.06489 -16.71193 -16.63794 -16.05378 -15.48862 -15.41094 -15.14464 -14.74564 -14.51491 -14.42040 -14.09952 -13.74259 -13.53493 -13.34575 -12.99329 -12.87667 -12.81409 -12.58723 -12.49553 -12.20647 -11.92843 -11.60802 -11.32495 -11.03918 -11.00789 -10.91712 -10.84436 -10.68659 -10.67781 -10.61812 -10.44410 -10.11002 -9.37170 -8.86132 -8.16670 -7.27139 -6.45989 -4.05154 0.29564 0.81123 1.89330 2.17842 2.20266 2.25554 2.33674 2.84154 3.04056 3.12394 3.13277 3.18887 3.56998 3.95351 4.16416 4.38814 4.48046 4.51260 4.54634 4.71055 4.83114 4.84560 4.94360 4.95329 5.05547 5.08011 5.15699 5.27938 5.42934 5.43096 5.57713 5.69052 5.87148 6.11390 6.16058 6.28032 6.59904 6.70574 6.85451 7.03324 7.17553 7.32088 7.39878 7.42897 7.68136 7.76411 7.98692 8.99756 9.69242 10.72107 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.020754 B = 0.001712 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.792705 B =16355.512327 C =17322.686153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.440 3.560 3 O -0.434 6.434 4 C -0.066 4.066 5 C -0.157 4.157 6 C -0.033 4.033 7 C 0.147 3.853 8 O -0.358 6.358 9 C 0.465 3.535 10 O -0.482 6.482 11 C -0.062 4.062 12 C -0.047 4.047 13 C -0.194 4.194 14 C -0.074 4.074 15 C -0.226 4.226 16 C 0.153 3.847 17 O -0.178 6.178 18 C -0.392 4.392 19 H 0.093 0.907 20 C 0.039 3.961 21 N -0.862 5.862 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.171 4.171 27 O 0.138 5.862 28 N -0.308 5.308 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.186 0.814 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.128 0.872 40 H 0.269 0.731 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.866 1.239 -3.849 25.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.314 3.686 3 O -0.303 6.303 4 C -0.222 4.222 5 C -0.179 4.179 6 C -0.095 4.095 7 C 0.072 3.928 8 O -0.277 6.277 9 C 0.307 3.693 10 O -0.367 6.367 11 C -0.099 4.099 12 C -0.047 4.047 13 C -0.213 4.213 14 C -0.092 4.092 15 C -0.246 4.246 16 C 0.100 3.900 17 O -0.082 6.082 18 C -0.468 4.468 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.497 5.497 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.201 1.201 26 C -0.191 4.191 27 O 0.057 5.943 28 N -0.006 5.006 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.203 0.797 33 H 0.130 0.870 34 H 0.118 0.882 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.145 0.855 40 H 0.079 0.921 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -25.403 1.775 -4.183 25.807 hybrid contribution 1.479 -0.223 -0.155 1.504 sum -23.924 1.552 -4.337 24.364 Atomic orbital electron populations 1.22201 0.91756 1.05551 1.05367 1.21510 0.91602 0.84538 0.70993 1.90497 1.72201 1.32636 1.34961 1.24237 0.93641 0.95199 1.09145 1.22728 0.95828 0.95998 1.03340 1.23860 0.87709 0.92733 1.05237 1.21042 0.87755 1.01108 0.82874 1.86563 1.40581 1.70679 1.29831 1.23961 0.77613 0.74305 0.93447 1.90753 1.55673 1.47557 1.42696 1.20284 0.96303 1.03236 0.90098 1.18645 0.91437 0.93301 1.01335 1.20377 0.97264 0.92950 1.10739 1.20695 0.92180 0.98531 0.97844 1.21219 0.98686 0.94169 1.10481 1.19267 0.87556 0.90594 0.92611 1.83976 1.10748 1.34598 1.78833 1.21374 0.81537 0.91265 1.52611 0.88999 1.25288 0.98587 0.96114 0.96533 1.70044 1.26129 1.07484 1.46081 0.85644 0.80296 0.79210 0.78251 1.19090 1.20159 1.20138 1.19967 0.89782 0.99160 1.10159 1.84813 1.12033 1.32449 1.65049 1.74261 1.13844 0.98710 1.13799 0.88310 0.88949 0.88360 0.79691 0.86990 0.88163 0.86914 0.86814 0.87666 0.87285 0.85480 0.92069 0.86590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.93 10.13 36.00 0.36 -0.57 16 2 C 0.44 3.67 7.27 -30.42 -0.22 3.45 16 3 O -0.43 -4.83 17.66 5.95 0.11 -4.72 16 4 C -0.07 -0.60 7.12 -82.64 -0.59 -1.19 16 5 C -0.16 -1.35 10.92 -39.02 -0.43 -1.78 16 6 C -0.03 -0.28 7.11 -35.37 -0.25 -0.53 16 7 C 0.15 1.25 6.02 36.00 0.22 1.47 16 8 O -0.36 -3.85 10.20 -39.26 -0.40 -4.25 16 9 C 0.46 6.08 7.95 36.01 0.29 6.37 16 10 O -0.48 -8.03 15.78 -18.75 -0.30 -8.32 16 11 C -0.06 -0.75 5.94 -29.04 -0.17 -0.93 16 12 C -0.05 -0.79 4.37 -104.65 -0.46 -1.25 16 13 C -0.19 -3.25 9.70 -39.53 -0.38 -3.64 16 14 C -0.07 -1.35 10.04 -39.61 -0.40 -1.74 16 15 C -0.23 -4.89 9.17 -39.40 -0.36 -5.25 16 16 C 0.15 3.68 6.65 -39.11 -0.26 3.42 16 17 O -0.18 -5.06 9.76 0.05 0.00 -5.06 16 18 C -0.39 -10.89 9.49 30.89 0.29 -10.60 16 19 H 0.09 2.37 5.21 -52.49 -0.27 2.09 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.19 13.67 55.48 0.76 -24.43 16 22 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 26 C -0.17 -3.54 9.65 -39.39 -0.38 -3.92 16 27 O 0.14 1.25 11.17 17.24 0.19 1.44 16 28 N -0.31 -2.86 11.98 33.25 0.40 -2.46 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.38 8.12 -51.93 -0.42 -0.05 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.19 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.11 0.86 8.13 -51.93 -0.42 0.44 16 34 H 0.10 0.76 8.13 -51.93 -0.42 0.33 16 35 H 0.11 1.04 8.09 -51.93 -0.42 0.62 16 36 H 0.11 1.18 8.08 -51.93 -0.42 0.76 16 37 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 39 H 0.13 2.74 5.64 -52.48 -0.30 2.45 16 40 H 0.27 7.19 8.31 -40.82 -0.34 6.86 16 41 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 376.34 15.07 5.67 5.67 Total: -1.00 -34.24 376.34 -5.77 -40.02 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -4.35 Total: 2.42 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -2.83 Total: -15.71 kcal Atomic # 7 Polarization: -28.04 SS G_CDS: 1.16 Total: -26.88 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.40 Total: -20.91 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.24 -5.77 -40.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813137003.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.223 kcal (2) G-P(sol) polarization free energy of solvation -34.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds