Wall clock time and date at job start Wed Apr 1 2020 03:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20817 * 119.99946 * 2 1 4 4 C 1.47760 * 119.99802 * 179.97438 * 2 1 3 5 5 C 1.42450 * 126.96561 * 180.27821 * 4 2 1 6 6 C 1.35270 * 103.91327 * 180.13616 * 5 4 2 7 7 C 1.50696 * 126.64094 * 179.87293 * 6 5 4 8 8 O 1.45203 * 109.47037 * 89.71604 * 7 6 5 9 9 C 1.34230 * 117.00479 * 180.02562 * 8 7 6 10 10 O 1.20823 * 119.99459 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.00327 * 179.97438 * 9 8 7 12 12 C 1.50699 * 109.47151 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96224 * 270.02423 * 12 11 9 14 14 C 1.38281 * 120.13505 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96539 * 89.99818 * 12 11 9 27 27 O 1.34018 * 106.71909 * 359.61633 * 6 5 4 28 28 N 1.20908 * 111.89934 * 0.26412 * 27 6 5 29 29 H 1.09004 * 109.47702 * 240.00499 * 1 2 3 30 30 H 1.09002 * 109.47367 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.47150 * 120.00399 * 1 2 3 32 32 H 1.08001 * 128.03789 * 0.02562 * 5 4 2 33 33 H 1.09001 * 109.47454 * 329.71780 * 7 6 5 34 34 H 1.08993 * 109.47450 * 209.71496 * 7 6 5 35 35 H 1.09004 * 109.46756 * 59.99766 * 11 9 8 36 36 H 1.08998 * 109.46908 * 300.00408 * 11 9 8 37 37 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 38 38 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 39 39 H 1.08006 * 120.03715 * 180.31908 * 15 14 13 40 40 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 41 41 H 1.07996 * 120.03547 * 0.04988 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0463 0.0000 4 6 2.2457 -1.2797 0.0006 5 6 3.6597 -1.4525 0.0062 6 6 3.8233 -2.7952 0.0011 7 6 5.1324 -3.5418 0.0010 8 8 5.5530 -3.7812 1.3700 9 6 6.7093 -4.4399 1.5460 10 8 7.3489 -4.8039 0.5878 11 6 7.2101 -4.7243 2.9386 12 6 8.5180 -5.4689 2.8597 13 6 8.5247 -6.8516 2.8236 14 6 9.7226 -7.5384 2.7507 15 6 10.9163 -6.8449 2.7072 16 6 10.9132 -5.4570 2.7491 17 8 12.0851 -4.7728 2.7126 18 6 13.2199 -5.4995 2.7576 19 1 13.1715 -6.5782 2.7377 20 6 14.4491 -4.8618 2.8295 21 7 14.5080 -3.5479 2.8543 22 14 16.0212 -5.8687 2.8927 23 1 15.6850 -7.3146 2.8523 24 1 16.8751 -5.5268 1.7269 25 1 16.7534 -5.5652 4.1486 26 6 9.7082 -4.7700 2.8231 27 8 2.5958 -3.3332 0.0018 28 7 1.7325 -2.4867 0.0015 29 1 -0.3635 -0.5138 0.8900 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 4.4234 -0.6889 0.0113 33 1 5.8888 -2.9488 -0.5130 34 1 5.0071 -4.4949 -0.5125 35 1 6.4777 -5.3310 3.4712 36 1 7.3589 -3.7845 3.4702 37 1 7.5923 -7.3960 2.8523 38 1 9.7246 -8.6180 2.7230 39 1 11.8515 -7.3817 2.6451 40 1 15.3679 -3.1019 2.9050 41 1 9.7023 -3.6905 2.8518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813137003.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:00 Heat of formation + Delta-G solvation = -75.023261 kcal Electronic energy + Delta-G solvation = -27625.466136 eV Core-core repulsion = 23246.718642 eV Total energy + Delta-G solvation = -4378.747494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.114 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.31061 -41.69286 -40.66644 -40.59142 -38.51956 -37.58591 -35.32933 -34.36391 -34.17028 -33.51449 -31.18276 -30.92479 -29.35065 -27.96343 -27.20878 -25.65393 -23.99550 -23.43597 -23.09530 -21.80348 -20.51867 -19.51222 -19.18926 -18.98290 -18.69979 -18.56942 -17.69135 -17.37531 -16.95314 -16.69168 -16.36492 -16.13310 -16.09022 -16.05838 -15.49779 -15.24639 -15.17254 -14.87366 -14.41754 -14.27303 -14.05402 -13.67193 -13.56732 -13.26537 -13.24697 -12.99220 -12.97631 -12.82281 -12.50729 -12.39708 -12.22449 -12.07849 -11.86397 -11.73565 -11.68915 -11.34330 -11.19806 -10.87114 -10.80090 -9.68049 -8.98302 -8.46407 -6.14672 -0.39107 0.09039 0.49029 0.75797 1.17949 1.35473 1.40781 1.44928 1.53803 1.58173 1.98354 2.18168 2.39063 2.84334 2.91912 3.18122 3.41977 3.52860 3.71928 3.74110 3.85077 3.97678 4.03961 4.11362 4.25607 4.31929 4.33576 4.41306 4.51315 4.52089 4.56948 4.64837 4.65505 4.75399 5.03488 5.04597 5.13578 5.22241 5.32189 5.64240 5.71903 5.75147 6.03504 6.08265 6.23173 6.69635 6.73776 6.98594 7.79827 8.77159 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.020754 B = 0.001712 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.792705 B =16355.512327 C =17322.686153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.441 3.559 3 O -0.469 6.469 4 C -0.076 4.076 5 C -0.164 4.164 6 C -0.028 4.028 7 C 0.144 3.856 8 O -0.352 6.352 9 C 0.475 3.525 10 O -0.525 6.525 11 C -0.062 4.062 12 C -0.038 4.038 13 C -0.174 4.174 14 C -0.074 4.074 15 C -0.242 4.242 16 C 0.109 3.891 17 O -0.234 6.234 18 C -0.412 4.412 19 H 0.101 0.899 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.019 2.981 23 H -0.251 1.251 24 H -0.270 1.270 25 H -0.268 1.268 26 C -0.187 4.187 27 O 0.137 5.863 28 N -0.311 5.311 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.194 0.806 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.157 0.843 36 H 0.133 0.867 37 H 0.153 0.847 38 H 0.147 0.853 39 H 0.117 0.883 40 H 0.272 0.728 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.755 -0.862 -3.520 27.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.318 3.682 3 O -0.340 6.340 4 C -0.232 4.232 5 C -0.186 4.186 6 C -0.090 4.090 7 C 0.070 3.930 8 O -0.270 6.270 9 C 0.319 3.681 10 O -0.413 6.413 11 C -0.099 4.099 12 C -0.038 4.038 13 C -0.192 4.192 14 C -0.092 4.092 15 C -0.261 4.261 16 C 0.059 3.941 17 O -0.141 6.141 18 C -0.489 4.489 19 H 0.119 0.881 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.838 3.162 23 H -0.174 1.174 24 H -0.195 1.195 25 H -0.193 1.193 26 C -0.207 4.207 27 O 0.055 5.945 28 N -0.009 5.009 29 H 0.130 0.870 30 H 0.119 0.881 31 H 0.131 0.869 32 H 0.211 0.789 33 H 0.138 0.862 34 H 0.132 0.868 35 H 0.175 0.825 36 H 0.151 0.849 37 H 0.171 0.829 38 H 0.164 0.836 39 H 0.135 0.865 40 H 0.081 0.919 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -28.381 -0.358 -3.845 28.642 hybrid contribution 1.955 0.352 -0.274 2.005 sum -26.426 -0.007 -4.119 26.745 Atomic orbital electron populations 1.22244 0.88912 1.06613 1.06535 1.22043 0.93015 0.83680 0.69506 1.90489 1.73112 1.33560 1.36884 1.24488 0.93996 0.95551 1.09173 1.22958 0.96107 0.96408 1.03112 1.23791 0.87519 0.92540 1.05166 1.21237 0.87845 1.02061 0.81835 1.86525 1.39382 1.69865 1.31179 1.23957 0.77551 0.73489 0.93116 1.90759 1.56931 1.49569 1.44006 1.20403 0.94568 1.04539 0.90349 1.19118 0.92197 0.94016 0.98479 1.21031 0.98602 0.92996 1.06606 1.21149 0.91225 1.00487 0.96319 1.21339 1.00051 0.93384 1.11335 1.19887 0.87416 0.92135 0.94615 1.83936 1.12028 1.36149 1.82009 1.21856 0.82232 0.91925 1.52843 0.88141 1.26584 1.02207 0.97396 0.95930 1.70188 1.27139 1.09641 1.49013 0.84524 0.75088 0.78020 0.78530 1.17444 1.19489 1.19256 1.20252 0.90321 0.99351 1.10734 1.84801 1.12179 1.32493 1.65037 1.74251 1.13943 0.98739 1.13930 0.87017 0.88056 0.86932 0.78883 0.86236 0.86845 0.82528 0.84881 0.82950 0.83576 0.86511 0.91896 0.87135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.46 10.13 71.24 0.72 -0.74 16 2 C 0.44 6.93 7.27 28.21 0.20 7.13 16 3 O -0.47 -10.29 17.66 -1.62 -0.03 -10.32 16 4 C -0.08 -1.28 7.12 42.81 0.30 -0.98 16 5 C -0.16 -2.62 10.92 22.63 0.25 -2.38 16 6 C -0.03 -0.42 7.11 25.00 0.18 -0.24 16 7 C 0.14 2.15 6.02 71.23 0.43 2.58 16 8 O -0.35 -6.54 10.20 -51.42 -0.52 -7.06 16 9 C 0.47 11.04 7.95 71.24 0.57 11.60 16 10 O -0.52 -16.49 15.78 21.97 0.35 -16.14 16 11 C -0.06 -1.26 5.94 29.10 0.17 -1.09 16 12 C -0.04 -1.19 4.37 -19.88 -0.09 -1.27 16 13 C -0.17 -5.09 9.70 22.30 0.22 -4.87 16 14 C -0.07 -2.48 10.04 22.25 0.22 -2.25 16 15 C -0.24 -10.56 9.17 22.39 0.21 -10.36 16 16 C 0.11 5.49 6.65 22.58 0.15 5.64 16 17 O -0.23 -14.27 9.76 -22.74 -0.22 -14.49 16 18 C -0.41 -24.26 9.49 67.92 0.64 -23.62 16 19 H 0.10 5.44 5.21 -2.91 -0.02 5.42 16 20 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 21 N -0.92 -56.98 13.67 21.61 0.30 -56.68 16 22 Si 1.02 43.17 29.55 68.60 2.03 45.19 16 23 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 26 C -0.19 -7.85 9.65 22.39 0.22 -7.64 16 27 O 0.14 2.21 11.17 71.86 0.80 3.02 16 28 N -0.31 -5.22 11.98 -49.57 -0.59 -5.82 16 29 H 0.11 0.62 8.14 -2.38 -0.02 0.61 16 30 H 0.10 0.64 8.12 -2.39 -0.02 0.62 16 31 H 0.11 0.59 8.14 -2.39 -0.02 0.58 16 32 H 0.19 2.66 8.06 -2.91 -0.02 2.63 16 33 H 0.12 1.65 8.13 -2.39 -0.02 1.63 16 34 H 0.11 1.44 8.13 -2.39 -0.02 1.42 16 35 H 0.16 1.91 8.09 -2.38 -0.02 1.89 16 36 H 0.13 2.30 8.08 -2.39 -0.02 2.28 16 37 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 38 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 39 H 0.12 5.21 5.64 -2.91 -0.02 5.19 16 40 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -80.96 376.34 8.05 -72.91 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 1.09 Total: 18.78 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: 4.86 Total: -29.38 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: -0.30 Total: -62.50 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: 0.37 Total: -44.99 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -80.96 8.05 -72.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813137003.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.118 kcal (2) G-P(sol) polarization free energy of solvation -80.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds