Wall clock time and date at job start Wed Apr 1 2020 04:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35954 * 117.00286 * 2 1 4 4 C 1.38010 * 119.99576 * 359.97438 * 3 2 1 5 5 C 1.40099 * 119.82998 * 180.02562 * 4 3 2 6 6 C 1.46760 * 120.08285 * 179.97438 * 5 4 3 7 7 C 1.35465 * 120.00308 * 46.09548 * 6 5 4 8 8 C 1.41531 * 119.99875 * 11.30657 * 7 6 5 9 9 O 1.21729 * 119.99640 * 6.79703 * 8 7 6 10 10 C 1.48329 * 120.00158 * 186.80195 * 8 7 6 11 11 C 1.42309 * 126.94684 * 180.02562 * 10 8 7 12 12 C 1.35268 * 103.92965 * 179.97438 * 11 10 8 13 13 C 1.50694 * 126.66158 * 179.97438 * 12 11 10 14 14 O 1.42904 * 109.47268 * 90.00165 * 13 12 11 15 15 O 1.34039 * 106.68537 * 0.02562 * 12 11 10 16 16 N 1.20910 * 111.85023 * 359.74367 * 15 12 11 17 17 C 1.40161 * 119.83107 * 0.25649 * 5 4 3 18 18 C 1.37576 * 119.99018 * 359.46400 * 17 5 4 19 19 C 1.39129 * 120.16929 * 0.53751 * 18 17 5 20 20 O 1.35568 * 119.91530 * 179.76030 * 19 18 17 21 21 C 1.34712 * 116.99657 * 354.15286 * 20 19 18 22 22 H 1.07999 * 120.00695 * 5.07741 * 21 20 19 23 23 C 1.38774 * 119.99487 * 185.07332 * 21 20 19 24 24 N 1.31481 * 119.99743 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 120.00301 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.46748 * 89.99935 * 25 23 21 27 27 H 1.48500 * 109.47231 * 210.00021 * 25 23 21 28 28 H 1.48495 * 109.47130 * 330.00160 * 25 23 21 29 29 H 1.09006 * 109.46682 * 300.00058 * 1 2 3 30 30 H 1.09001 * 109.47223 * 59.99486 * 1 2 3 31 31 H 1.09000 * 109.47301 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.08177 * 359.97438 * 4 3 2 33 33 H 1.08006 * 119.99330 * 226.37135 * 6 5 4 34 34 H 1.07994 * 120.00241 * 191.30229 * 7 6 5 35 35 H 1.08008 * 128.03298 * 359.97438 * 11 10 8 36 36 H 1.09000 * 109.47341 * 210.00050 * 13 12 11 37 37 H 1.09000 * 109.47133 * 330.00604 * 13 12 11 38 38 H 0.96695 * 113.99999 * 180.02562 * 14 13 12 39 39 H 1.08001 * 120.00404 * 179.74199 * 17 5 4 40 40 H 1.07997 * 119.91602 * 180.27528 * 18 17 5 41 41 H 0.96997 * 119.99550 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2945 2.3688 -0.0005 5 6 1.9342 3.6152 -0.0011 6 6 1.1403 4.8495 -0.0022 7 6 0.0893 4.9797 0.8425 8 6 -0.1018 4.0409 1.8842 9 8 0.7420 3.1903 2.0993 10 6 -1.3303 4.0934 2.7138 11 6 -1.6719 3.2296 3.7919 12 6 -2.8733 3.6898 4.2097 13 6 -3.7055 3.1376 5.3382 14 8 -3.3505 3.7937 6.5571 15 8 -3.1806 4.7317 3.4244 16 7 -2.3181 4.9474 2.6051 17 6 3.3343 3.6803 -0.0065 18 6 4.0766 2.5220 -0.0002 19 6 3.4412 1.2843 0.0004 20 8 4.1777 0.1461 0.0017 21 6 5.5125 0.2814 -0.1198 22 1 5.9570 1.2657 -0.1300 23 6 6.3166 -0.8441 -0.2317 24 7 7.6194 -0.7122 -0.3498 25 14 5.5481 -2.5467 -0.2132 26 1 5.2126 -2.9534 -1.6014 27 1 6.5096 -3.5175 0.3684 28 1 4.3112 -2.5225 0.6081 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 0.2159 2.3137 -0.0014 33 1 1.3914 5.6523 -0.6797 34 1 -0.6027 5.7998 0.7211 35 1 -1.1039 2.3994 4.1852 36 1 -4.7614 3.3079 5.1281 37 1 -3.5222 2.0675 5.4350 38 1 -3.8476 3.4873 7.3279 39 1 3.8303 4.6396 -0.0112 40 1 5.1554 2.5736 0.0001 41 1 8.1814 -1.4989 -0.4277 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821012056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:18 Heat of formation + Delta-G solvation = -38.262035 kcal Electronic energy + Delta-G solvation = -29278.853784 eV Core-core repulsion = 24901.700376 eV Total energy + Delta-G solvation = -4377.153408 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.114 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -46.19960 -41.63386 -40.64408 -39.41272 -37.94879 -37.86558 -35.15203 -34.72491 -34.25900 -33.42167 -31.18977 -30.51092 -28.29580 -27.67723 -27.55339 -26.56908 -24.13658 -23.54743 -23.19988 -22.04891 -20.13400 -19.78428 -19.17779 -19.06926 -18.74671 -18.16073 -18.11293 -17.22361 -17.13726 -16.76578 -16.35363 -16.11975 -15.86496 -15.75734 -15.52345 -15.44326 -15.20525 -14.95988 -14.61902 -14.42293 -14.38179 -14.12165 -13.85070 -13.27368 -13.07155 -12.95476 -12.81930 -12.72548 -12.64925 -12.17021 -12.09624 -12.02120 -11.58014 -11.46885 -11.17850 -11.05816 -10.92782 -10.75858 -10.55944 -9.31172 -8.66301 -8.53541 -6.20683 -0.74867 0.13597 0.49135 0.56749 1.02496 1.27893 1.32746 1.51375 1.83329 2.21410 2.27160 2.46372 2.57273 2.71253 2.96164 3.05387 3.09085 3.61661 3.72560 3.88047 3.92206 3.94739 4.09269 4.16325 4.23626 4.30991 4.31362 4.45176 4.49131 4.53037 4.57475 4.59905 4.60413 4.77393 4.87768 5.01808 5.09036 5.30030 5.48226 5.57362 5.62262 5.78974 6.01274 6.37731 6.52748 6.80816 6.87217 6.91918 7.57507 8.57502 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.015299 B = 0.002677 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.736670 B =10456.003067 C =11315.518784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.341 6.341 3 C 0.045 3.955 4 C -0.096 4.096 5 C -0.129 4.129 6 C 0.047 3.953 7 C -0.264 4.264 8 C 0.448 3.552 9 O -0.453 6.453 10 C -0.067 4.067 11 C -0.185 4.185 12 C -0.032 4.032 13 C 0.160 3.840 14 O -0.591 6.591 15 O 0.131 5.869 16 N -0.326 5.326 17 C -0.071 4.071 18 C -0.216 4.216 19 C 0.109 3.891 20 O -0.232 6.232 21 C -0.400 4.400 22 H 0.088 0.912 23 C 0.016 3.984 24 N -0.915 5.915 25 Si 0.964 3.036 26 H -0.265 1.265 27 H -0.263 1.263 28 H -0.270 1.270 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.118 0.882 32 H 0.135 0.865 33 H 0.179 0.821 34 H 0.160 0.840 35 H 0.184 0.816 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.414 0.586 39 H 0.152 0.848 40 H 0.124 0.876 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.298 10.017 8.059 30.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.256 6.256 3 C 0.000 4.000 4 C -0.115 4.115 5 C -0.130 4.130 6 C 0.029 3.971 7 C -0.282 4.282 8 C 0.329 3.671 9 O -0.329 6.329 10 C -0.223 4.223 11 C -0.207 4.207 12 C -0.095 4.095 13 C 0.082 3.918 14 O -0.403 6.403 15 O 0.052 5.948 16 N -0.025 5.025 17 C -0.089 4.089 18 C -0.235 4.235 19 C 0.059 3.941 20 O -0.139 6.139 21 C -0.476 4.476 22 H 0.106 0.894 23 C -0.183 4.183 24 N -0.555 5.555 25 Si 0.787 3.213 26 H -0.190 1.190 27 H -0.187 1.187 28 H -0.195 1.195 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.136 0.864 32 H 0.152 0.848 33 H 0.196 0.804 34 H 0.178 0.822 35 H 0.201 0.799 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.267 0.733 39 H 0.170 0.830 40 H 0.142 0.858 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -26.387 10.360 6.935 29.183 hybrid contribution 0.268 -1.416 0.801 1.648 sum -26.119 8.944 7.736 28.671 Atomic orbital electron populations 1.23222 0.77256 1.05106 1.01426 1.86109 1.22758 1.26685 1.90045 1.18169 0.88652 0.85780 1.07355 1.20846 0.98682 0.90233 1.01775 1.18739 0.93148 0.92943 1.08155 1.22947 0.88024 0.93441 0.92734 1.22424 1.02765 1.04048 0.98990 1.18601 0.82020 0.83214 0.83221 1.90907 1.41433 1.34281 1.66277 1.24410 0.99018 0.97091 1.01755 1.22822 0.96712 1.03844 0.97302 1.24719 0.97175 0.90188 0.97379 1.20563 0.96644 0.95751 0.78818 1.86472 1.68191 1.66848 1.18747 1.84762 1.37062 1.40089 1.32931 1.74147 0.98944 1.19794 1.09601 1.21122 0.92430 0.97744 0.97600 1.20979 1.00634 0.91434 1.10500 1.19188 0.88921 0.87193 0.98790 1.83516 1.19419 1.28876 1.82056 1.20823 0.78500 0.96564 1.51695 0.89433 1.25194 0.94962 1.02742 0.95414 1.69677 1.04067 1.32798 1.48998 0.85313 0.78528 0.78038 0.79455 1.19004 1.18701 1.19516 0.92923 0.91831 0.86417 0.84759 0.80387 0.82235 0.79898 0.87832 0.87185 0.73277 0.83003 0.85828 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 9.81 113.37 1.11 1.81 16 2 O -0.34 -14.62 10.28 -79.07 -0.81 -15.43 16 3 C 0.05 2.01 6.70 22.57 0.15 2.16 16 4 C -0.10 -3.47 5.70 22.67 0.13 -3.34 16 5 C -0.13 -4.18 4.39 -20.13 -0.09 -4.27 16 6 C 0.05 1.05 9.79 23.86 0.23 1.28 16 7 C -0.26 -5.94 9.54 22.44 0.21 -5.73 16 8 C 0.45 12.56 6.09 25.77 0.16 12.71 16 9 O -0.45 -15.94 12.80 -4.44 -0.06 -16.00 16 10 C -0.07 -1.68 7.10 42.96 0.31 -1.38 16 11 C -0.18 -3.95 10.92 22.60 0.25 -3.70 16 12 C -0.03 -0.52 7.10 25.00 0.18 -0.34 16 13 C 0.16 1.13 7.60 71.23 0.54 1.67 16 14 O -0.59 -5.78 13.64 -148.98 -2.03 -7.81 16 15 O 0.13 2.59 11.18 71.66 0.80 3.39 16 16 N -0.33 -7.58 11.85 -49.42 -0.59 -8.17 16 17 C -0.07 -2.52 9.78 22.58 0.22 -2.30 16 18 C -0.22 -9.88 9.14 22.33 0.20 -9.67 16 19 C 0.11 5.58 6.67 22.83 0.15 5.73 16 20 O -0.23 -13.57 8.35 -5.59 -0.05 -13.61 16 21 C -0.40 -24.39 9.94 67.95 0.68 -23.71 16 22 H 0.09 5.47 5.41 -2.91 -0.02 5.45 16 23 C 0.02 0.97 5.50 84.87 0.47 1.43 16 24 N -0.92 -55.41 13.96 21.63 0.30 -55.11 16 25 Si 0.96 47.75 28.62 68.60 1.96 49.72 16 26 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 27 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 28 H -0.27 -13.90 7.11 99.48 0.71 -13.20 16 29 H 0.05 1.42 7.66 -2.38 -0.02 1.40 16 30 H 0.06 1.56 7.66 -2.39 -0.02 1.54 16 31 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.13 4.18 5.49 -2.91 -0.02 4.16 16 33 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.16 2.82 7.94 -2.91 -0.02 2.80 16 35 H 0.18 3.67 8.06 -2.91 -0.02 3.64 16 36 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.41 -0.52 9.12 -74.06 -0.68 -1.20 16 39 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 40 H 0.12 6.00 5.62 -2.91 -0.02 5.99 16 41 H 0.29 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -83.35 363.58 4.87 -78.48 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.44 Total: 12.19 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: 4.90 Total: -27.65 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: -0.28 Total: -63.28 kcal Atomic # 8 Polarization: -47.32 SS G_CDS: -2.15 Total: -49.47 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 1.96 Total: 49.72 kcal Total: -83.35 4.87 -78.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821012056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.221 kcal (2) G-P(sol) polarization free energy of solvation -83.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds