Wall clock time and date at job start Wed Apr 1 2020 04:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35723 * 117.00066 * 2 1 4 4 C 1.41769 * 126.77677 * 180.28212 * 3 2 1 5 5 C 1.36809 * 103.80342 * 180.11366 * 4 3 2 6 6 C 1.47527 * 126.88964 * 179.97438 * 5 4 3 7 7 O 1.21828 * 119.99800 * 359.72041 * 6 5 4 8 8 C 1.41723 * 120.00376 * 179.71651 * 6 5 4 9 9 C 1.35377 * 120.00353 * 173.77179 * 8 6 5 10 10 C 1.46794 * 119.99778 * 345.35416 * 9 8 6 11 11 C 1.40139 * 120.08647 * 317.28252 * 10 9 8 12 12 C 1.37581 * 119.99716 * 179.97438 * 11 10 9 13 13 C 1.39124 * 120.16442 * 359.97438 * 12 11 10 14 14 O 1.35570 * 119.91204 * 180.02562 * 13 12 11 15 15 C 1.34719 * 117.00313 * 354.68663 * 14 13 12 16 16 H 1.07994 * 119.99532 * 5.05890 * 15 14 13 17 17 C 1.38770 * 119.99713 * 185.05641 * 15 14 13 18 18 N 1.31469 * 120.00583 * 0.02562 * 17 15 14 19 19 Si 1.86811 * 119.99756 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46516 * 60.00092 * 19 17 15 21 21 H 1.48496 * 109.47001 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47084 * 300.00575 * 19 17 15 23 23 C 1.39682 * 120.17072 * 0.02562 * 13 12 11 24 24 O 1.35950 * 119.99399 * 179.97438 * 23 13 12 25 25 C 1.42907 * 116.99530 * 179.97438 * 24 23 13 26 26 C 1.38021 * 120.00281 * 359.74117 * 23 13 12 27 27 O 1.34651 * 106.22479 * 359.67329 * 5 4 3 28 28 N 1.20878 * 111.61981 * 0.22135 * 27 5 4 29 29 H 1.08990 * 109.47207 * 300.00360 * 1 2 3 30 30 H 1.09004 * 109.46652 * 60.00453 * 1 2 3 31 31 H 1.08999 * 109.47163 * 179.97438 * 1 2 3 32 32 H 1.07992 * 128.09694 * 0.02562 * 4 3 2 33 33 H 1.08008 * 119.99939 * 353.49208 * 8 6 5 34 34 H 1.07997 * 120.00633 * 165.36110 * 9 8 6 35 35 H 1.08004 * 120.00176 * 359.95584 * 11 10 9 36 36 H 1.07999 * 119.92245 * 180.02562 * 12 11 10 37 37 H 0.97003 * 120.00071 * 180.02562 * 18 17 15 38 38 H 1.08999 * 109.46714 * 60.00334 * 25 24 23 39 39 H 1.09000 * 109.46858 * 179.97438 * 25 24 23 40 40 H 1.08993 * 109.47484 * 300.00284 * 25 24 23 41 41 H 1.07992 * 120.08067 * 180.27784 * 26 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4423 1.4500 -0.0056 5 6 3.5384 2.8147 -0.0003 6 6 4.7776 3.6152 -0.0023 7 8 5.8617 3.0595 -0.0041 8 6 4.7069 5.0307 -0.0022 9 6 5.8373 5.7649 0.1232 10 6 7.0798 5.1279 0.5764 11 6 7.0534 4.2123 1.6371 12 6 8.2189 3.6160 2.0600 13 6 9.4253 3.9189 1.4369 14 8 10.5706 3.3279 1.8575 15 6 10.4889 2.5442 2.9502 16 1 9.5280 2.3446 3.4009 17 6 11.6395 1.9934 3.4966 18 7 12.8093 2.2367 2.9482 19 14 11.5263 0.9072 5.0122 20 1 10.6713 -0.2699 4.7148 21 1 12.8856 0.4472 5.3941 22 1 10.9320 1.6805 6.1320 23 6 9.4596 4.8305 0.3791 24 8 10.6405 5.1243 -0.2269 25 6 10.6015 6.0647 -1.3022 26 6 8.2939 5.4292 -0.0541 27 8 2.2751 3.2808 0.0002 28 7 1.4683 2.3807 0.0004 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 4.2432 0.7256 -0.0111 33 1 3.7516 5.5237 -0.1067 34 1 5.8252 6.8193 -0.1101 35 1 6.1183 3.9751 2.1227 36 1 8.1972 2.9102 2.8773 37 1 13.6135 1.8513 3.3299 38 1 10.2141 7.0164 -0.9386 39 1 11.6078 6.2089 -1.6955 40 1 9.9530 5.6865 -2.0924 41 1 8.3182 6.1308 -0.8747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821022012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:10 Heat of formation + Delta-G solvation = -20.781611 kcal Electronic energy + Delta-G solvation = -28993.233649 eV Core-core repulsion = 24616.838249 eV Total energy + Delta-G solvation = -4376.395400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.114 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -46.07275 -41.46121 -40.61233 -39.96136 -39.24755 -37.69996 -34.68437 -34.31247 -34.01808 -33.03858 -31.15897 -30.22987 -28.64914 -27.96141 -27.43058 -26.27808 -24.45674 -23.72404 -23.20267 -22.26383 -20.71320 -19.89944 -19.56549 -19.05074 -18.61175 -17.94834 -17.73769 -17.16334 -16.79013 -16.60763 -16.58185 -16.39231 -16.16797 -15.72522 -15.66965 -15.30432 -15.17169 -14.99905 -14.86033 -14.36547 -14.20323 -13.89376 -13.49925 -13.17691 -13.07634 -12.92047 -12.84269 -12.72130 -12.54706 -12.50214 -12.19728 -12.04659 -11.84830 -11.37736 -11.03817 -10.95288 -10.84963 -10.45630 -10.30766 -9.43366 -8.47181 -8.40837 -6.09833 -0.84381 0.10687 0.63023 0.89920 1.09412 1.34277 1.46283 1.50954 1.57396 1.76676 2.17607 2.21447 2.62916 2.83456 2.89751 3.16189 3.32038 3.42970 3.66074 3.86642 4.02287 4.06944 4.21399 4.22273 4.26130 4.32678 4.36854 4.48129 4.54381 4.58189 4.60375 4.62071 4.75203 4.76503 4.97513 5.07819 5.11332 5.34320 5.48802 5.54223 5.75426 5.82224 5.95303 6.03870 6.39783 6.69298 6.93640 6.97064 7.80031 8.76184 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.010225 B = 0.002900 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.693493 B = 9652.946158 C =11852.286987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.295 6.295 3 C 0.196 3.804 4 C -0.179 4.179 5 C -0.067 4.067 6 C 0.460 3.540 7 O -0.445 6.445 8 C -0.265 4.265 9 C 0.054 3.946 10 C -0.139 4.139 11 C -0.036 4.036 12 C -0.221 4.221 13 C 0.100 3.900 14 O -0.215 6.215 15 C -0.416 4.416 16 H 0.101 0.899 17 C -0.021 4.021 18 N -0.915 5.915 19 Si 1.018 2.982 20 H -0.258 1.258 21 H -0.270 1.270 22 H -0.255 1.255 23 C 0.029 3.971 24 O -0.347 6.347 25 C 0.021 3.979 26 C -0.126 4.126 27 O 0.134 5.866 28 N -0.400 5.400 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.135 0.865 32 H 0.189 0.811 33 H 0.179 0.821 34 H 0.182 0.818 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.273 0.727 38 H 0.070 0.930 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.545 5.656 -7.418 25.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.201 6.201 3 C 0.000 4.000 4 C -0.200 4.200 5 C -0.131 4.131 6 C 0.340 3.660 7 O -0.322 6.322 8 C -0.283 4.283 9 C 0.036 3.964 10 C -0.140 4.140 11 C -0.054 4.054 12 C -0.241 4.241 13 C 0.048 3.952 14 O -0.121 6.121 15 C -0.492 4.492 16 H 0.119 0.881 17 C -0.219 4.219 18 N -0.552 5.552 19 Si 0.837 3.163 20 H -0.183 1.183 21 H -0.195 1.195 22 H -0.179 1.179 23 C -0.016 4.016 24 O -0.263 6.263 25 C -0.074 4.074 26 C -0.144 4.144 27 O 0.066 5.934 28 N -0.124 5.124 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.153 0.847 32 H 0.206 0.794 33 H 0.197 0.803 34 H 0.199 0.801 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.124 0.876 40 H 0.083 0.917 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -23.505 5.309 -7.444 25.221 hybrid contribution 0.683 -1.289 0.539 1.555 sum -22.823 4.020 -6.905 24.181 Atomic orbital electron populations 1.23386 0.74761 1.06259 1.02610 1.86231 1.24658 1.20046 1.89184 1.22031 0.90852 0.86189 1.00924 1.22564 0.94814 0.96129 1.06532 1.25047 0.88501 0.93817 1.05784 1.18441 0.83464 0.90436 0.73630 1.91012 1.28227 1.75542 1.37444 1.22495 1.01589 0.92001 1.12205 1.22934 0.88409 1.00981 0.84072 1.18744 0.93668 1.02048 0.99534 1.20849 0.95895 0.93003 0.95690 1.20857 0.91858 1.06450 1.04913 1.19556 0.87800 0.93420 0.94404 1.83938 1.29021 1.56217 1.42932 1.21854 0.96065 1.26769 1.04482 0.88125 1.26627 0.93365 0.99416 1.02521 1.70171 0.99002 1.44203 1.41866 0.84666 0.78405 0.77595 0.75644 1.18281 1.19451 1.17913 1.18337 0.86746 0.99938 0.96556 1.86183 1.28973 1.62017 1.49106 1.23265 1.04758 0.91545 0.87803 1.21193 0.89527 1.01887 1.01834 1.84904 1.11554 1.29026 1.67898 1.73963 1.16303 0.96866 1.25250 0.91968 0.91839 0.84732 0.79379 0.80344 0.80054 0.85781 0.86045 0.91761 0.91101 0.87601 0.91742 0.81801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.73 113.37 1.22 1.53 16 2 O -0.29 -6.25 10.57 -90.46 -0.96 -7.21 16 3 C 0.20 4.61 7.99 85.75 0.69 5.30 16 4 C -0.18 -4.28 10.97 22.81 0.25 -4.03 16 5 C -0.07 -1.52 7.18 24.39 0.18 -1.34 16 6 C 0.46 11.04 5.97 25.58 0.15 11.19 16 7 O -0.45 -14.62 12.88 -4.76 -0.06 -14.68 16 8 C -0.26 -4.48 9.51 22.47 0.21 -4.27 16 9 C 0.05 0.98 9.79 23.85 0.23 1.22 16 10 C -0.14 -4.18 4.44 -20.13 -0.09 -4.27 16 11 C -0.04 -1.29 6.75 22.58 0.15 -1.14 16 12 C -0.22 -10.12 9.14 22.33 0.20 -9.91 16 13 C 0.10 5.25 6.68 22.83 0.15 5.40 16 14 O -0.22 -13.63 9.52 -5.67 -0.05 -13.68 16 15 C -0.42 -25.11 9.48 67.95 0.64 -24.47 16 16 H 0.10 5.57 5.18 -2.91 -0.02 5.56 16 17 C -0.02 -1.24 5.50 84.87 0.47 -0.77 16 18 N -0.92 -57.86 13.67 21.63 0.30 -57.56 16 19 Si 1.02 43.97 29.55 68.60 2.03 46.00 16 20 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 22 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 23 C 0.03 1.30 6.70 22.57 0.15 1.45 16 24 O -0.35 -15.57 10.28 -79.02 -0.81 -16.38 16 25 C 0.02 0.58 9.81 113.37 1.11 1.69 16 26 C -0.13 -4.14 8.78 22.67 0.20 -3.94 16 27 O 0.13 2.81 11.06 65.74 0.73 3.54 16 28 N -0.40 -9.13 11.50 -171.94 -1.98 -11.11 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.19 4.38 8.06 -2.91 -0.02 4.36 16 33 H 0.18 1.68 7.99 -2.91 -0.02 1.66 16 34 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 35 H 0.12 3.86 7.12 -2.91 -0.02 3.84 16 36 H 0.12 5.67 5.61 -2.91 -0.02 5.65 16 37 H 0.27 15.79 8.31 -92.71 -0.77 15.01 16 38 H 0.07 1.60 7.67 -2.39 -0.02 1.58 16 39 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.06 1.53 7.65 -2.39 -0.02 1.51 16 41 H 0.16 3.87 6.28 -2.91 -0.02 3.85 16 Total: -1.00 -83.91 364.25 6.20 -77.71 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 1.10 Total: 19.77 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: 5.92 Total: -26.39 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: -1.68 Total: -68.68 kcal Atomic # 8 Polarization: -47.26 SS G_CDS: -1.16 Total: -48.41 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -83.91 6.20 -77.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821022012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.925 kcal (2) G-P(sol) polarization free energy of solvation -83.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds