Wall clock time and date at job start Wed Apr 1 2020 04:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86803 * 119.99619 * 2 1 4 4 H 1.48500 * 109.46860 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47256 * 299.99915 * 3 2 1 6 6 H 1.48503 * 109.46870 * 60.00176 * 3 2 1 7 7 C 1.38948 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99727 * 200.79397 * 7 2 1 9 9 N 1.37098 * 120.00054 * 20.80503 * 7 2 1 10 10 C 1.46503 * 120.00180 * 16.59661 * 9 7 2 11 11 C 1.50700 * 109.47115 * 264.08916 * 10 9 7 12 12 O 1.20832 * 119.99629 * 0.02562 * 11 10 9 13 13 O 1.34224 * 120.00121 * 180.02562 * 11 10 9 14 14 C 1.34775 * 119.99698 * 196.59761 * 9 7 2 15 15 O 1.21292 * 119.99760 * 179.97438 * 14 9 7 16 16 C 1.50701 * 120.00265 * 359.97438 * 14 9 7 17 17 N 1.46495 * 109.47240 * 179.97438 * 16 14 9 18 18 C 1.34773 * 120.00303 * 180.02562 * 17 16 14 19 19 O 1.21649 * 119.99859 * 359.97438 * 18 17 16 20 20 C 1.47060 * 120.00489 * 180.02562 * 18 17 16 21 21 C 1.35863 * 125.43107 * 180.02562 * 20 18 17 22 22 C 1.41590 * 107.72431 * 179.97438 * 21 20 18 23 23 C 1.40106 * 133.37326 * 179.97438 * 22 21 20 24 24 C 1.36437 * 119.82580 * 180.02562 * 23 22 21 25 25 C 1.38942 * 120.61793 * 359.96894 * 24 23 22 26 26 C 1.37671 * 120.64736 * 0.04096 * 25 24 23 27 27 C 1.39229 * 119.80897 * 359.97438 * 26 25 24 28 28 N 1.37479 * 133.17881 * 179.97438 * 27 26 25 29 29 H 0.96996 * 125.60877 * 0.02685 * 28 27 26 30 30 H 0.97004 * 120.00203 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46922 * 24.08657 * 10 9 7 32 32 H 1.08993 * 109.46943 * 144.09101 * 10 9 7 33 33 H 0.96698 * 117.00032 * 179.97438 * 13 11 10 34 34 H 1.08999 * 109.46914 * 59.99598 * 16 14 9 35 35 H 1.09000 * 109.46730 * 300.00050 * 16 14 9 36 36 H 0.97000 * 119.99801 * 359.97438 * 17 16 14 37 37 H 1.08005 * 126.13792 * 359.94278 * 21 20 18 38 38 H 1.08003 * 120.08828 * 0.05878 * 23 22 21 39 39 H 1.08006 * 119.68909 * 179.97438 * 24 23 22 40 40 H 1.07994 * 119.67290 * 180.02562 * 25 24 23 41 41 H 1.08001 * 120.09330 * 180.25272 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8892 2.3964 1.2126 7 6 2.0088 -1.2033 0.0005 8 1 3.0361 -1.2336 0.3326 9 7 1.3904 -2.3521 -0.4207 10 6 0.1527 -2.2741 -1.2007 11 6 -1.0313 -2.4249 -0.2807 12 8 -0.8589 -2.5811 0.9050 13 8 -2.2772 -2.3858 -0.7784 14 6 1.9210 -3.5532 -0.1171 15 8 1.3736 -4.5696 -0.4893 16 6 3.1944 -3.6336 0.6849 17 7 3.5607 -5.0385 0.8802 18 6 4.6718 -5.3550 1.5742 19 8 5.3708 -4.4740 2.0381 20 6 5.0399 -6.7653 1.7698 21 6 6.1306 -7.2078 2.4482 22 6 6.1203 -8.6230 2.4049 23 6 6.9743 -9.6076 2.9190 24 6 6.6947 -10.9262 2.7074 25 6 5.5688 -11.3040 1.9863 26 6 4.7146 -10.3553 1.4709 27 6 4.9786 -9.0033 1.6731 28 7 4.3314 -7.8513 1.2934 29 1 3.5119 -7.8082 0.7763 30 1 -0.4851 0.8401 -0.0004 31 1 0.1009 -1.3087 -1.7042 32 1 0.1402 -3.0722 -1.9429 33 1 -3.0046 -2.4875 -0.1495 34 1 3.0434 -3.1596 1.6547 35 1 3.9935 -3.1202 0.1501 36 1 3.0032 -5.7409 0.5106 37 1 6.8727 -6.5908 2.9331 38 1 7.8513 -9.3236 3.4817 39 1 7.3548 -11.6833 3.1044 40 1 5.3619 -12.3521 1.8283 41 1 3.8397 -10.6591 0.9152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:52 Heat of formation + Delta-G solvation = -87.860942 kcal Electronic energy + Delta-G solvation = -29085.375008 eV Core-core repulsion = 24738.363581 eV Total energy + Delta-G solvation = -4347.011427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.66055 -39.71934 -39.12153 -38.15598 -36.85952 -35.47741 -34.71471 -34.13327 -32.27968 -31.80836 -30.01697 -29.23658 -28.70998 -26.69120 -24.91621 -23.57976 -22.27857 -21.37453 -20.92649 -20.07483 -19.51713 -18.71156 -17.46293 -17.18393 -16.97612 -16.16005 -15.95922 -15.79390 -15.39404 -15.34478 -14.85219 -14.53213 -14.50239 -14.34204 -14.25291 -14.05634 -13.79311 -13.62816 -13.32682 -12.98551 -12.55856 -12.29394 -11.90485 -11.81800 -11.71042 -11.63630 -11.59353 -11.09579 -11.07885 -10.74088 -10.52062 -10.36077 -10.09600 -10.03606 -9.79115 -9.22383 -8.95585 -8.94246 -8.38812 -8.19721 -7.91663 -6.69889 -4.20161 0.66058 1.46145 2.05566 2.79894 2.96259 3.11060 3.15157 3.18854 3.37192 3.41809 3.56112 3.74992 3.89569 4.14419 4.50146 4.52034 4.76505 4.83782 4.84417 4.96108 5.16061 5.24547 5.38153 5.55770 5.69615 5.81750 5.87203 5.95118 6.10102 6.13618 6.27077 6.34826 6.42450 6.43857 6.46407 6.54326 6.55959 6.91422 7.18020 7.23401 7.31402 7.51314 7.65205 8.01313 8.24005 8.75744 9.00988 9.11556 9.47016 10.37176 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.017345 B = 0.002447 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.891592 B =11441.048654 C =12767.342437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.041 3.959 3 Si 0.929 3.071 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.345 4.345 8 H 0.110 0.890 9 N -0.416 5.416 10 C 0.156 3.844 11 C 0.499 3.501 12 O -0.509 6.509 13 O -0.534 6.534 14 C 0.457 3.543 15 O -0.607 6.607 16 C 0.121 3.879 17 N -0.707 5.707 18 C 0.579 3.421 19 O -0.525 6.525 20 C 0.028 3.972 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.061 4.061 24 C -0.152 4.152 25 C -0.092 4.092 26 C -0.131 4.131 27 C 0.111 3.889 28 N -0.576 5.576 29 H 0.421 0.579 30 H 0.275 0.725 31 H 0.126 0.874 32 H 0.084 0.916 33 H 0.392 0.608 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.404 0.596 37 H 0.157 0.843 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.759 -14.151 0.171 15.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.165 4.165 3 Si 0.755 3.245 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.472 4.472 8 H 0.127 0.873 9 N -0.134 5.134 10 C 0.030 3.970 11 C 0.340 3.660 12 O -0.394 6.394 13 O -0.345 6.345 14 C 0.246 3.754 15 O -0.495 6.495 16 C -0.005 4.005 17 N -0.360 5.360 18 C 0.364 3.636 19 O -0.402 6.402 20 C -0.081 4.081 21 C -0.140 4.140 22 C -0.123 4.123 23 C -0.080 4.080 24 C -0.171 4.171 25 C -0.112 4.112 26 C -0.152 4.152 27 C 0.000 4.000 28 N -0.181 5.181 29 H 0.259 0.741 30 H 0.086 0.914 31 H 0.144 0.856 32 H 0.102 0.898 33 H 0.248 0.752 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.241 0.759 37 H 0.174 0.826 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.054 -13.698 0.274 15.410 hybrid contribution -1.082 0.732 0.147 1.315 sum 5.972 -12.966 0.421 14.281 Atomic orbital electron populations 1.69836 1.06327 1.28448 1.45561 1.25282 0.95284 1.00321 0.95585 0.85827 0.79950 0.80670 0.78089 1.18812 1.20275 1.20578 1.19782 0.97375 0.84167 1.45872 0.87254 1.43327 1.19651 1.05169 1.45209 1.20473 0.80719 1.04338 0.91447 1.23597 0.83058 0.70375 0.89009 1.90575 1.85639 1.45324 1.17895 1.84510 1.17398 1.86443 1.46187 1.19923 0.87964 0.83619 0.83848 1.90508 1.65238 1.34789 1.58961 1.20957 0.96457 0.81182 1.01939 1.45694 1.25776 1.09742 1.54818 1.17137 0.81180 0.86253 0.79025 1.90851 1.51900 1.47595 1.49821 1.20246 0.96374 0.86841 1.04683 1.20891 0.98161 0.92825 1.02109 1.18224 0.96984 0.93481 1.03661 1.20403 0.97981 0.91768 0.97840 1.20616 0.98642 0.95815 1.02060 1.20851 0.94320 0.98719 0.97300 1.20098 1.01680 0.88949 1.04431 1.18357 0.94191 0.87785 0.99627 1.42047 1.24327 1.03875 1.47817 0.74054 0.91407 0.85603 0.89776 0.75186 0.88362 0.88870 0.75935 0.82578 0.85779 0.86004 0.85686 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.29 9.24 55.50 0.51 -20.78 16 2 C 0.04 0.97 4.90 -17.47 -0.09 0.89 16 3 Si 0.93 18.51 29.60 -169.99 -5.03 13.48 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.35 -8.19 9.15 -14.93 -0.14 -8.33 16 8 H 0.11 2.45 6.55 -52.49 -0.34 2.11 16 9 N -0.42 -9.79 2.18 -116.10 -0.25 -10.04 16 10 C 0.16 3.49 5.14 -5.19 -0.03 3.46 16 11 C 0.50 11.57 6.50 36.01 0.23 11.80 16 12 O -0.51 -13.56 16.80 -18.75 -0.32 -13.87 16 13 O -0.53 -10.16 13.42 -39.24 -0.53 -10.69 16 14 C 0.46 10.27 7.49 -10.99 -0.08 10.19 16 15 O -0.61 -14.22 15.35 5.55 0.09 -14.13 16 16 C 0.12 2.36 4.60 -5.20 -0.02 2.34 16 17 N -0.71 -12.12 5.52 -62.68 -0.35 -12.47 16 18 C 0.58 9.79 7.80 -12.69 -0.10 9.70 16 19 O -0.53 -10.33 16.84 5.23 0.09 -10.24 16 20 C 0.03 0.41 6.97 -82.29 -0.57 -0.16 16 21 C -0.11 -1.53 10.53 -39.16 -0.41 -1.94 16 22 C -0.12 -1.48 6.16 -106.93 -0.66 -2.13 16 23 C -0.06 -0.62 10.06 -39.53 -0.40 -1.02 16 24 C -0.15 -1.33 9.96 -39.97 -0.40 -1.73 16 25 C -0.09 -0.80 10.01 -39.53 -0.40 -1.19 16 26 C -0.13 -1.30 10.08 -39.42 -0.40 -1.69 16 27 C 0.11 1.34 7.25 -83.98 -0.61 0.73 16 28 N -0.58 -7.04 6.07 -7.36 -0.04 -7.08 16 29 H 0.42 4.36 8.12 -40.82 -0.33 4.03 16 30 H 0.28 6.46 8.31 -40.82 -0.34 6.12 16 31 H 0.13 2.81 6.35 -51.93 -0.33 2.48 16 32 H 0.08 1.74 7.61 -51.93 -0.40 1.34 16 33 H 0.39 5.74 9.10 45.56 0.41 6.15 16 34 H 0.10 2.03 8.10 -51.93 -0.42 1.61 16 35 H 0.09 1.75 7.70 -51.93 -0.40 1.35 16 36 H 0.40 6.48 6.49 -40.82 -0.26 6.21 16 37 H 0.16 1.94 8.06 -52.48 -0.42 1.52 16 38 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 39 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 361.55 15.07 5.45 5.45 Total: -1.00 -32.13 361.55 -7.76 -39.90 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -3.32 Total: 19.58 kcal Atomic # 6 Polarization: 24.96 SS G_CDS: -4.06 Total: 20.90 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.13 Total: -50.37 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: -0.67 Total: -48.94 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.13 -7.76 -39.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.964 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds